Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 1.2e-164 583.2 301 100.0
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 5.3e-141 504.6 303 83.8
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 1.2e-137 493.4 296 85.1
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.6e-137 493.0 306 82.0
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 2.1e-137 492.7 300 82.7
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 3.5e-137 491.9 288 85.8
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 3.5e-137 491.9 296 85.1
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 3.0e-136 488.8 294 83.3
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 3.9e-136 488.4 286 86.0
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 6.7e-136 487.6 307 81.8
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 6.7e-136 487.6 281 86.1
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.1e-135 486.9 301 81.1
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.1e-135 486.9 294 81.3
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.1e-135 486.9 296 83.8
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 1.9e-135 486.1 298 82.2
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 1.9e-135 486.1 302 83.1
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 3.3e-135 485.3 303 81.2
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 3.3e-135 485.3 298 81.2
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 4.3e-135 485.0 281 85.1
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 7.4e-135 484.2 311 80.7
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 7.4e-135 484.2 306 82.4
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 9.6e-135 483.8 298 80.2
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 1.3e-134 483.4 280 84.6
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 1.3e-134 483.4 298 81.5
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 1.3e-134 483.4 298 83.6
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 1.6e-134 483.0 298 81.2
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 1.6e-134 483.0 281 83.6
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 1.6e-134 483.0 281 83.6
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 2.1e-134 482.6 281 83.6
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 2.1e-134 482.6 281 83.6
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 2.1e-134 482.6 281 83.6
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 2.1e-134 482.6 303 82.5
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 2.1e-134 482.6 298 83.6
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 2.8e-134 482.3 283 84.1
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 2.8e-134 482.3 304 80.3
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 4.8e-134 481.5 283 83.4
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 4.8e-134 481.5 301 80.4
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 4.8e-134 481.5 298 81.2
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 6.2e-134 481.1 299 82.6
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 8.1e-134 480.7 282 84.0
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 8.1e-134 480.7 281 82.9
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 8.1e-134 480.7 301 80.7
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 1.1e-133 480.3 301 79.7
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 1.4e-133 479.9 283 83.0
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 1.8e-133 479.6 298 79.5
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 1.8e-133 479.6 298 80.2
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 1.8e-133 479.6 281 84.3
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 1.8e-133 479.6 282 83.3
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 1.8e-133 479.6 282 84.0
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 1.8e-133 479.6 301 81.4
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 2.4e-133 479.2 282 83.0
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 3.1e-133 478.8 283 83.0
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 4.0e-133 478.4 303 81.8
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 5.3e-133 478.0 298 79.9
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 5.3e-133 478.0 284 84.2
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 6.9e-133 477.6 282 82.3
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 9.0e-133 477.2 298 80.5
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 9.0e-133 477.2 277 84.8
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 1.2e-132 476.9 296 83.4
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 1.5e-132 476.5 294 82.3
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.5e-132 476.5 298 81.9
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 1.5e-132 476.5 281 84.0
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 2.0e-132 476.1 306 80.1
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 2.0e-132 476.1 282 84.4
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 2.0e-132 476.1 298 79.5
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 2.0e-132 476.1 277 84.1
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 2.6e-132 475.7 301 80.7
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 3.4e-132 475.3 282 83.0
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 4.5e-132 474.9 284 83.5
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 5.8e-132 474.6 295 82.4
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 5.8e-132 474.6 280 82.9
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 7.6e-132 474.2 279 83.2
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 1.3e-131 473.4 282 82.6
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.7e-131 473.0 298 80.2
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 2.2e-131 472.6 299 80.6
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 2.9e-131 472.2 281 81.9
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 3.8e-131 471.9 298 80.5
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 3.8e-131 471.9 282 83.3
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 6.4e-131 471.1 294 81.3
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 6.4e-131 471.1 300 79.3
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 1.1e-130 470.3 282 81.9
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 1.1e-130 470.3 301 80.1
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 1.1e-130 470.3 302 80.1
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 1.4e-130 469.9 279 83.9
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 2.4e-130 469.2 292 80.5
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.4e-130 469.2 281 84.3
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 3.2e-130 468.8 299 79.3
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 4.2e-130 468.4 281 81.9
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 5.5e-130 468.0 302 78.5
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 7.1e-130 467.6 278 82.0
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 9.3e-130 467.2 303 77.9
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 9.3e-130 467.2 257 88.3
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 9.3e-130 467.2 282 80.9
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 1.2e-129 466.8 281 81.1
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 3.5e-129 465.3 279 82.4
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 6.0e-129 464.5 278 82.7
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 7.9e-129 464.2 282 80.9
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 1.0e-128 463.8 255 87.1
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 1.8e-128 463.0 280 82.1
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 1.1e-127 460.3 303 77.2
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 4.3e-127 458.4 302 75.5
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 4.3e-127 458.4 281 80.1
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 9.6e-127 457.2 303 76.6
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 9.6e-127 457.2 293 78.2
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 1.6e-126 456.4 295 76.6
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 3.7e-126 455.3 295 76.6
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 6.2e-126 454.5 298 74.5
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 1.8e-125 453.0 284 79.2
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 6.9e-125 451.1 294 77.2
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 1.2e-124 450.3 289 78.5
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 7.6e-124 447.6 293 75.8
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 2.5e-122 442.6 278 80.9
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 4.2e-122 441.8 311 73.6
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 5.5e-122 441.4 281 80.8
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 5.5e-122 441.4 329 72.9
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 1.1e-119 433.7 267 82.4
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.9e-119 433.0 274 80.7
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 5.7e-119 431.4 282 76.6
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 1.1e-117 427.2 282 76.6
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 2.0e-116 422.9 387 62.5
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 5.0e-115 418.3 279 76.7
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 8.5e-115 417.5 254 82.3
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 8.5e-115 417.5 221 91.4
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 4.2e-114 415.2 221 91.4
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 9.3e-114 414.1 263 78.7
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 6.7e-112 407.9 253 79.4
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 1.9e-111 406.4 274 74.8
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 6.3e-110 401.4 218 88.1
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 6.3e-110 401.4 218 88.1
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 6.9e-109 397.9 279 69.2
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 1.2e-108 397.1 250 74.4
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 2.5e-106 389.4 277 66.8
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 3.2e-106 389.0 251 74.1
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 2.8e-102 375.9 200 90.5
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 6.3e-102 374.8 253 70.8
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.6e-97 359.0 309 64.7
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 5.2e-96 355.1 231 80.1
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 7.0e-93 344.7 215 80.5
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 5.5e-90 335.1 182 90.1
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 1.2e-89 334.0 182 87.9
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 1.2e-87 327.4 208 79.3
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 4.7e-81 305.4 174 85.6
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 4.0e-80 302.4 221 73.3
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 4.8e-78 295.4 202 75.7
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 9.8e-71 271.2 152 86.2
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 1.9e-66 256.9 194 65.5
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 3.0e-64 249.6 146 83.6
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 3.5e-60 236.1 209 63.6
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 4.7e-49 199.1 119 79.0
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 2.3e-48 196.8 242 47.5
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 5.8e-47 192.2 158 64.6
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 2.9e-46 189.9 136 72.8
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 9.5e-42 174.9 105 80.0
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 1.2e-41 174.5 178 57.3
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 3.8e-38 162.9 86 88.4
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 4.6e-36 156.0 96 78.1
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 2.0e-31 140.6 305 32.8
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.3e-30 137.9 83 78.3
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 3.9e-27 126.3 196 42.9
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 7.3e-26 122.1 170 42.9
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 2.8e-25 120.2 66 89.4
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 2.8e-25 120.2 66 89.4
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 2.9e-22 110.2 82 67.1
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 3.7e-17 93.2 53 79.2
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 9.0e-16 88.6 158 38.6
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 4.5e-15 86.3 85 52.9
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 1.3e-14 84.7 79 55.7
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 5.5e-13 79.3 62 64.5
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 5.5e-13 79.3 62 64.5
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 1.3e-11 74.7 92 46.7
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 1.1e-10 71.6 103 41.7
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.5e-10 71.2 62 59.7
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 9.6e-10 68.6 110 39.1
Lj8C156T6 Lonicera japonica HOM05D003815 ORTHO05D004580 2.1e-09 67.4 80 61.2
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 5.3e-08 62.8 57 50.9
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 6.9e-08 62.4 43 72.1
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 2.6e-07 60.5 49 65.3
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 4.5e-07 59.7 53 58.5
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 5.8e-07 59.3 34 76.5
Lj2g0024488 Lotus japonicus HOM05D003815 ORTHO05D004580 6.5e-06 55.8 38 71.1
Solyc04g079010.1 Solanum lycopersicum HOM05D003815 ORTHO05D004580 6.5e-06 55.8 31 74.2


User provided reference genes

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