Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 0.0e+00 1179.9 718 100.0
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 6.9e-131 472.2 753 50.6
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 3.1e-123 446.8 744 45.3
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 1.0e-118 431.8 767 47.1
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 4.3e-117 426.4 765 43.5
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 3.7e-116 423.3 775 44.0
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 8.2e-116 422.2 751 43.9
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 8.5e-113 412.1 771 41.8
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 2.1e-111 407.5 744 42.3
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 2.7e-111 407.1 726 47.8
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 2.3e-110 404.1 801 41.2
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 5.1e-110 402.9 744 41.5
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 5.7e-109 399.4 773 44.5
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 2.2e-108 397.5 755 44.5
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 5.9e-106 389.4 773 43.2
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 8.5e-105 385.6 766 41.9
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.1e-104 385.2 751 45.3
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 3.2e-104 383.6 776 42.0
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 9.4e-104 382.1 749 40.3
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 1.2e-103 381.7 767 43.3
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 1.6e-103 381.3 743 42.1
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 1.6e-103 381.3 783 41.8
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 8.0e-103 379.0 736 43.1
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 1.0e-102 378.6 756 45.0
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 2.3e-102 377.5 761 43.0
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 3.0e-102 377.1 739 41.8
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 8.8e-102 375.6 789 41.3
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 8.8e-102 375.6 737 44.6
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 1.5e-101 374.8 784 40.1
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 2.6e-101 374.0 769 42.4
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 2.8e-100 370.5 763 40.4
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.8e-99 367.9 792 41.0
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 5.3e-99 366.3 798 40.5
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.3e-97 361.7 775 41.3
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 2.9e-97 360.5 755 41.3
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 1.5e-96 358.2 757 40.3
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.2e-95 355.1 779 41.3
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 1.6e-95 354.8 784 40.1
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 1.0e-94 352.1 766 42.8
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 2.3e-94 350.9 773 41.1
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 2.3e-94 350.9 725 41.8
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 6.7e-94 349.4 738 45.8
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 8.8e-94 349.0 781 42.8
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 7.5e-93 345.9 804 44.4
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 9.7e-93 345.5 709 42.3
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 2.2e-92 344.4 805 40.7
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 2.8e-92 344.0 764 40.2
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 2.8e-92 344.0 751 40.9
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 3.7e-92 343.6 738 46.2
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 3.1e-91 340.5 733 47.5
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 4.1e-91 340.1 801 41.8
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 2.0e-90 337.8 816 38.4
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 5.0e-89 333.2 785 39.0
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 6.5e-89 332.8 722 40.2
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 9.4e-88 328.9 731 38.9
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 2.7e-87 327.4 759 39.9
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 4.7e-87 326.6 844 41.0
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 4.7e-87 326.6 799 40.2
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.2e-85 322.0 707 41.0
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.2e-85 322.0 678 42.5
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 1.2e-85 322.0 722 39.3
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 7.5e-85 319.3 704 41.1
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 2.2e-84 317.8 773 39.8
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 1.1e-83 315.5 704 38.8
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 4.1e-83 313.5 759 39.9
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 1.6e-82 311.6 747 38.6
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 4.5e-82 310.1 759 40.4
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 1.9e-80 304.7 625 42.2
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 5.5e-80 303.1 692 40.2
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 9.5e-80 302.4 735 38.0
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.2e-79 302.0 737 42.7
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 3.6e-79 300.4 726 40.6
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.7e-79 300.1 710 39.0
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 4.7e-79 300.1 627 44.2
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 4.7e-79 300.1 758 38.8
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 6.1e-79 299.7 729 38.3
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.4e-78 298.5 768 41.9
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 6.8e-78 296.2 735 41.0
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 2.6e-77 294.3 750 38.4
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 4.4e-77 293.5 711 39.4
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 1.3e-76 292.0 731 37.5
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 2.8e-76 290.8 763 41.3
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 6.3e-76 289.7 796 36.1
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 1.1e-75 288.9 778 38.9
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 1.4e-75 288.5 752 36.3
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 2.4e-75 287.7 765 38.7
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 3.1e-75 287.3 750 36.7
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 5.4e-75 286.6 692 39.3
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.6e-74 285.0 725 37.0
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 2.9e-73 280.8 743 35.1
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.9e-72 278.1 690 37.4
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 2.5e-72 277.7 707 43.3
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 3.3e-72 277.3 723 38.0
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 7.3e-72 276.2 735 40.0
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 2.8e-71 274.2 721 37.7
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 2.3e-70 271.2 714 37.8
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 5.2e-70 270.0 797 36.9
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 8.9e-70 269.2 752 36.0
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 8.9e-70 269.2 709 42.6
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 1.2e-69 268.9 759 37.4
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 9.8e-69 265.8 740 38.8
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 9.2e-67 259.2 703 36.1
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 1.6e-63 248.4 706 40.5
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 4.7e-63 246.9 805 38.3
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 1.8e-62 245.0 627 43.7
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 5.2e-62 243.4 742 38.7
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 6.8e-62 243.0 736 36.4
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 9.8e-61 239.2 683 37.2
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 6.4e-60 236.5 775 37.5
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 7.0e-59 233.0 758 33.1
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 9.2e-59 232.6 769 33.3
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 1.3e-57 228.8 709 34.4
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 1.7e-57 228.4 704 39.5
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 4.0e-54 217.2 766 33.2
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 6.8e-54 216.5 703 33.1
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 6.8e-54 216.5 424 43.4
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 5.8e-53 213.4 777 34.2
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 2.9e-52 211.1 709 36.8
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 1.1e-51 209.1 876 30.6
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 4.6e-50 203.8 867 34.1
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 2.3e-49 201.4 690 31.9
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 9.5e-48 196.1 614 35.5
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 2.4e-46 191.4 682 31.5
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 8.9e-46 189.5 876 30.6
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 4.4e-45 187.2 739 32.2
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 4.4e-45 187.2 739 32.2
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 6.4e-44 183.3 731 36.9
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 8.4e-44 183.0 742 33.0
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 2.4e-43 181.4 743 31.9
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 7.8e-42 176.4 696 31.9
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 3.0e-41 174.5 755 30.9
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 1.1e-40 172.6 793 33.9
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.1e-39 168.3 696 31.5
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 4.7e-39 167.2 574 35.9
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.4e-38 165.6 696 30.2
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 1.8e-38 165.2 767 30.5
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 3.1e-38 164.5 700 32.1
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 8.4e-36 156.4 724 31.5
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 4.2e-35 154.1 213 50.7
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 2.7e-34 151.4 170 51.8
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 4.6e-34 150.6 232 47.0
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 3.0e-33 147.9 210 45.7
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 3.9e-33 147.5 668 31.7
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 1.1e-32 146.0 699 32.8
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 4.8e-31 140.6 644 30.4
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 8.1e-31 139.8 295 42.4
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 8.1e-31 139.8 659 30.7
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.8e-30 138.7 479 36.5
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 3.1e-30 137.9 660 30.5
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 3.1e-30 137.9 153 58.2
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 2.0e-29 135.2 683 29.9
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 5.8e-29 133.7 479 31.9
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 7.6e-29 133.3 403 37.7
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 9.9e-29 132.9 532 30.3
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 5.4e-27 127.1 160 49.4
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 8.1e-23 113.2 138 52.2
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 8.1e-23 113.2 185 42.2
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 6.9e-22 110.2 101 61.4
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 1.2e-21 109.4 107 65.4
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 2.0e-21 108.6 190 42.1
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 3.4e-21 107.8 479 34.2
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 4.5e-21 107.5 688 30.4
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 3.2e-19 101.3 677 26.3
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.8e-17 95.5 222 39.2
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 7.4e-16 90.1 190 37.9
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 6.9e-14 83.6 50 78.0
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 4.9e-12 77.4 407 28.5
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 2.5e-11 75.1 264 30.7
Lsat_1_v5_gn_5_162921 Lactuca sativa HOM05D004118 ORTHO05D004686 2.7e-10 71.6 74 62.2
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.0e-09 69.7 303 30.0
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 5.1e-09 67.4 391 26.9
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.5e-08 65.9 290 33.1
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 4.8e-07 60.8 328 32.3
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 4.8e-07 60.8 388 27.8
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 4.8e-07 60.8 345 31.9
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 4.8e-07 60.8 368 27.4
CDE02G0061 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 1.1e-06 59.7 551 29.0
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 1.1e-06 59.7 328 29.0
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 1.8e-06 58.9 315 26.7
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 2.4e-06 58.5 341 29.3
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 3.1e-06 58.2 317 25.6
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 4.1e-06 57.8 313 29.1
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 4.1e-06 57.8 88 51.1
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 9.0e-06 56.6 110 45.5


User provided reference genes

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