Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 2.7e-126 455.3 225 100.0
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 1.3e-96 356.7 220 81.4
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 1.3e-96 356.7 213 80.3
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 3.7e-91 338.6 215 75.8
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 3.7e-91 338.6 219 77.2
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 3.2e-90 335.5 211 75.8
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 3.9e-88 328.6 210 75.2
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 5.0e-88 328.2 211 75.4
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 5.0e-88 328.2 217 73.7
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 8.6e-88 327.4 209 75.1
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 8.6e-88 327.4 214 72.4
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 1.9e-87 326.2 217 74.7
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 1.9e-87 326.2 215 74.0
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 3.3e-87 325.5 211 76.8
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 3.3e-87 325.5 212 75.0
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 4.3e-87 325.1 221 71.0
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 5.6e-87 324.7 217 72.4
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 5.6e-87 324.7 215 74.0
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 1.6e-86 323.2 214 76.2
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 2.8e-86 322.4 217 71.9
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 3.6e-86 322.0 209 75.6
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 6.2e-86 321.2 214 68.7
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 6.2e-86 321.2 214 68.7
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.8e-85 319.7 210 75.7
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 1.8e-85 319.7 216 71.3
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 2.3e-85 319.3 212 71.2
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 3.1e-85 318.9 216 71.3
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 4.0e-85 318.5 209 74.6
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 5.2e-85 318.2 215 72.6
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 8.9e-85 317.4 221 68.8
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 8.9e-85 317.4 216 70.8
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 8.9e-85 317.4 215 72.1
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 1.5e-84 316.6 216 69.4
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 3.4e-84 315.5 209 74.2
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 5.8e-84 314.7 217 71.4
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 7.5e-84 314.3 209 72.2
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 7.5e-84 314.3 209 73.7
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 1.3e-83 313.5 209 73.2
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.7e-83 313.2 216 69.9
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 1.7e-83 313.2 215 68.8
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 2.2e-83 312.8 215 69.3
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 2.9e-83 312.4 215 70.2
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 8.3e-83 310.8 215 68.4
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 1.1e-82 310.5 217 70.5
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 1.1e-82 310.5 217 69.1
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 1.4e-82 310.1 220 66.8
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 1.9e-82 309.7 216 71.3
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 1.9e-82 309.7 217 67.3
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 1.9e-82 309.7 217 67.3
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 2.4e-82 309.3 217 67.3
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 3.2e-82 308.9 214 69.2
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 5.4e-82 308.1 212 69.3
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 2.1e-81 306.2 209 70.8
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 2.1e-81 306.2 218 67.4
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 6.0e-81 304.7 223 64.6
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 2.3e-80 302.8 196 74.0
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 2.3e-80 302.8 218 67.0
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 5.1e-80 301.6 223 65.5
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 5.1e-80 301.6 218 67.4
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 9.5e-79 297.4 205 69.8
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 4.7e-78 295.0 213 67.6
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 6.2e-78 294.7 215 64.2
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 8.1e-78 294.3 215 66.0
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 1.4e-77 293.5 215 65.6
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 1.4e-77 293.5 206 66.0
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 1.8e-77 293.1 222 64.0
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 2.3e-77 292.7 215 65.1
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 3.1e-77 292.4 214 65.9
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 5.2e-77 291.6 213 65.3
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 6.8e-77 291.2 208 65.9
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 8.9e-77 290.8 215 65.1
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 8.9e-77 290.8 217 63.6
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 2.6e-76 289.3 204 71.1
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 5.8e-76 288.1 217 65.0
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 9.9e-76 287.3 216 63.0
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 9.9e-76 287.3 214 64.5
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 9.9e-76 287.3 214 64.5
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 9.9e-76 287.3 214 65.0
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 1.3e-75 287.0 214 65.0
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 2.2e-75 286.2 214 64.0
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 2.2e-75 286.2 214 64.5
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 2.2e-75 286.2 214 64.5
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 2.2e-75 286.2 212 63.2
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 2.9e-75 285.8 209 65.6
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 3.7e-75 285.4 273 55.3
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 1.4e-74 283.5 217 63.1
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 1.4e-74 283.5 204 65.2
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 7.1e-74 281.2 217 63.6
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 7.1e-74 281.2 214 63.1
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 1.6e-73 280.0 209 63.6
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 7.8e-73 277.7 214 60.7
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 1.7e-72 276.6 214 63.1
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 5.1e-72 275.0 168 79.2
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 1.9e-71 273.1 210 63.3
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 1.2e-70 270.4 218 58.3
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 1.2e-70 270.4 215 60.0
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 3.6e-70 268.9 207 62.8
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 2.4e-69 266.2 178 73.6
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 3.1e-69 265.8 207 65.2
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 5.2e-69 265.0 198 64.6
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 5.8e-68 261.5 209 61.7
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 7.6e-68 261.2 186 67.2
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 7.6e-68 261.2 209 61.7
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 2.2e-67 259.6 213 60.6
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 4.9e-67 258.5 214 55.6
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 1.9e-66 256.5 201 58.7
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 2.4e-66 256.1 219 58.9
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 5.1e-64 248.4 175 68.6
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 6.6e-64 248.1 166 70.5
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 8.7e-64 247.7 156 74.4
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 1.5e-63 246.9 211 56.4
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 4.3e-63 245.4 214 58.9
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 5.6e-63 245.0 216 59.7
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 1.6e-62 243.4 181 65.7
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 1.4e-61 240.4 214 58.4
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 4.0e-61 238.8 172 66.9
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 6.9e-61 238.0 212 59.4
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 3.4e-60 235.7 216 55.1
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.3e-59 233.8 205 55.6
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.1e-58 230.7 211 53.6
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 1.2e-57 227.3 150 74.7
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 7.9e-57 224.6 155 70.3
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 1.0e-56 224.2 215 56.7
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 1.3e-56 223.8 211 54.5
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 5.1e-56 221.9 215 51.6
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 1.1e-55 220.7 210 52.9
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 9.6e-55 217.6 143 75.5
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 1.6e-54 216.9 168 57.7
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 2.4e-53 213.0 202 50.0
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 5.8e-52 208.4 209 47.4
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 5.8e-52 208.4 216 52.8
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 1.7e-51 206.8 215 46.0
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 9.3e-50 201.1 217 52.5
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 1.5e-44 183.7 216 49.1
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 5.8e-44 181.8 152 53.3
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 3.9e-40 169.1 209 40.7
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 9.6e-39 164.5 109 71.6
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 4.8e-38 162.2 214 42.1
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 5.3e-37 158.7 214 43.0
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 5.3e-37 158.7 211 37.0
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 4.5e-36 155.6 134 62.7
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 5.9e-36 155.2 313 31.0
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 2.2e-35 153.3 218 39.0
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 2.9e-35 152.9 95 74.7
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 2.7e-33 146.4 98 69.4
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 3.5e-33 146.0 119 63.0
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 8.2e-30 134.8 203 37.4
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 1.8e-29 133.7 211 37.0
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 2.2e-27 126.7 176 43.2
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 4.2e-26 122.5 177 41.8
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 9.4e-26 121.3 89 68.5
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 1.4e-24 117.5 128 43.0
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 7.4e-23 111.7 82 61.0
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 3.8e-19 99.4 203 39.4
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 5.3e-13 79.0 76 53.9
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 5.3e-13 79.0 84 48.8
Oeu018323.1 Olea europaea HOM05D004548 ORTHO05D005402 2.0e-07 60.5 51 54.9
Cpa.g.sc38.60 Carica papaya HOM05D004548 ORTHO05D005402 1.3e-06 57.8 44 61.4
Cfa019956 Carpinus fangiana HOM05D004548 ORTHO05D005402 3.7e-06 56.2 43 62.8


User provided reference genes

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