Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 8.9e-277 956.4 527 100.0
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 1.4e-149 533.9 544 59.4
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 5.4e-141 505.4 548 56.6
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 3.6e-137 492.7 538 55.6
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 3.6e-129 466.1 545 53.9
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 8.1e-129 464.9 571 51.3
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 9.9e-127 458.0 529 52.9
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 2.7e-124 449.9 551 52.3
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 1.7e-123 447.2 538 53.5
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 6.6e-123 445.3 565 49.7
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 1.1e-122 444.5 529 51.6
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 4.3e-122 442.6 551 51.5
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 1.6e-121 440.7 538 51.9
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 8.1e-121 438.3 553 51.2
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.1e-120 436.4 549 52.5
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 6.9e-120 435.3 543 52.7
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 7.6e-119 431.8 551 50.1
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 1.3e-118 431.0 544 51.3
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.9e-118 429.9 545 50.3
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 3.8e-118 429.5 592 48.1
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 6.4e-118 428.7 550 53.1
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 8.4e-118 428.3 552 50.7
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 7.1e-117 425.2 546 50.7
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 7.9e-116 421.8 541 49.9
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 1.3e-115 421.0 556 49.6
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.0e-115 419.9 542 53.0
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 5.1e-115 419.1 548 49.8
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 4.3e-114 416.0 548 51.1
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 6.2e-113 412.1 542 50.9
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 1.8e-112 410.6 534 50.4
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 2.4e-112 410.2 578 47.9
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 1.3e-107 394.4 591 46.7
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.8e-107 394.0 541 48.1
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 5.1e-107 392.5 559 47.6
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.1e-106 391.3 548 48.2
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 1.5e-106 391.0 542 48.2
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 4.8e-105 386.0 538 46.5
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 1.1e-104 384.8 543 48.6
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 1.4e-104 384.4 549 46.6
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 4.0e-104 382.9 535 46.4
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 6.9e-104 382.1 547 48.1
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 9.0e-104 381.7 584 45.0
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 1.2e-103 381.3 542 48.0
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 2.0e-103 380.6 558 47.0
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 3.4e-103 379.8 548 47.1
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 5.8e-103 379.0 538 47.4
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 7.6e-103 378.6 560 46.8
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 2.2e-102 377.1 538 49.1
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 6.5e-102 375.6 553 47.4
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 1.9e-101 374.0 538 46.3
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 4.2e-101 372.9 541 45.8
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 1.2e-100 371.3 583 43.4
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 1.6e-100 370.9 551 47.4
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 2.7e-100 370.2 540 47.6
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 3.5e-100 369.8 547 44.2
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 6.0e-100 369.0 555 45.9
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 2.3e-99 367.1 553 46.1
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 6.7e-99 365.5 463 51.4
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 6.7e-99 365.5 599 44.4
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 1.1e-98 364.8 547 45.9
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 4.3e-98 362.8 500 47.8
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 9.6e-98 361.7 543 47.0
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 9.6e-98 361.7 554 43.9
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 4.8e-97 359.4 558 45.2
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 8.2e-97 358.6 540 45.0
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 9.0e-96 355.1 551 46.5
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 1.2e-95 354.8 478 48.7
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 1.5e-95 354.4 537 43.6
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 3.4e-95 353.2 566 43.8
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 4.5e-95 352.8 569 45.0
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 7.6e-95 352.1 542 45.2
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 2.9e-94 350.1 555 44.1
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 6.5e-94 349.0 543 46.2
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 8.4e-94 348.6 443 49.2
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 1.9e-93 347.4 547 45.3
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 7.1e-93 345.5 649 43.5
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 3.5e-92 343.2 550 45.1
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 6.1e-92 342.4 576 43.8
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 1.3e-91 341.3 548 42.7
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 3.3e-90 336.7 542 43.7
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 4.8e-89 332.8 540 44.4
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 2.4e-88 330.5 531 42.4
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 3.1e-88 330.1 367 52.3
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 4.1e-88 329.7 539 43.8
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 2.6e-87 327.0 542 42.3
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 3.4e-87 326.6 537 43.6
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 7.2e-85 318.9 540 43.0
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 6.1e-84 315.8 535 42.1
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 3.3e-82 310.1 537 42.1
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 4.3e-82 309.7 542 42.1
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 7.4e-82 308.9 537 42.1
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 6.3e-81 305.8 531 41.8
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 8.2e-81 305.4 530 41.5
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 4.1e-80 303.1 539 41.9
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 4.5e-79 299.7 535 40.6
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 3.8e-78 296.6 470 44.3
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 6.5e-78 295.8 527 39.1
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 7.2e-77 292.4 471 43.1
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 2.7e-76 290.4 589 39.4
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 2.7e-76 290.4 560 39.6
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 3.0e-75 287.0 530 39.6
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 3.9e-75 286.6 566 41.2
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 4.8e-73 279.6 465 43.0
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 1.1e-72 278.5 318 50.9
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 4.1e-72 276.6 559 39.9
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.1e-68 264.2 300 50.3
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 9.1e-64 248.8 326 47.5
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 1.3e-62 245.0 495 38.2
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 1.3e-62 245.0 495 38.2
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 2.7e-60 237.3 386 44.0
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 5.7e-58 229.6 284 47.5
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 3.1e-56 223.8 394 39.8
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 1.2e-52 211.8 475 38.1
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 2.1e-52 211.1 456 40.6
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 1.5e-50 204.9 457 40.5
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 2.2e-41 174.5 598 29.9
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 1.0e-38 165.6 574 29.4
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 3.6e-36 157.1 269 40.9
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 3.7e-33 147.1 529 29.9
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 6.4e-33 146.4 387 34.1
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 4.3e-29 133.7 186 40.9
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 4.6e-23 113.6 260 40.4
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 1.9e-21 108.2 250 38.0
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 1.4e-19 102.1 259 32.8
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 1.7e-17 95.1 182 41.8
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 1.4e-16 92.0 66 62.1
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 1.2e-15 89.0 226 35.0
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 4.6e-15 87.0 206 35.0
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 1.7e-14 85.1 117 48.7
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 6.6e-14 83.2 155 39.4
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 8.6e-14 82.8 134 32.8
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.9e-13 81.6 101 54.5
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 3.6e-12 77.4 253 34.4
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 6.2e-12 76.6 119 44.5
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 6.2e-12 76.6 119 44.5
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 6.2e-12 76.6 119 44.5
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 6.2e-12 76.6 119 44.5
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 6.2e-12 76.6 119 44.5
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 6.2e-12 76.6 119 44.5
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 3.1e-11 74.3 118 43.2
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 2.7e-07 61.2 240 27.5


User provided reference genes

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