Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 5.4e-103 377.9 217 100.0
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 2.8e-91 339.0 215 89.8
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 4.7e-91 338.2 216 88.4
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 4.7e-91 338.2 216 86.1
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.3e-90 335.9 214 89.7
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 8.9e-90 334.0 212 85.8
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 2.9e-88 328.9 214 88.3
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 1.1e-87 327.0 213 87.3
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 1.8e-87 326.2 214 73.4
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 7.0e-87 324.3 212 86.8
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 7.0e-87 324.3 215 73.5
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 7.0e-87 324.3 215 73.5
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 7.0e-87 324.3 214 72.4
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 1.6e-86 323.2 213 84.0
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 1.6e-86 323.2 214 72.9
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 2.0e-86 322.8 213 87.3
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 2.0e-86 322.8 214 83.2
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 2.0e-86 322.8 213 85.0
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 2.7e-86 322.4 215 85.1
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 4.6e-86 321.6 216 71.8
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 5.9e-86 321.2 216 86.6
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 7.8e-86 320.9 214 84.1
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 7.8e-86 320.9 214 85.0
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 1.0e-85 320.5 214 78.0
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 1.3e-85 320.1 214 86.4
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.3e-85 320.1 215 72.1
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 3.0e-85 318.9 214 74.3
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 3.0e-85 318.9 222 71.6
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 6.6e-85 317.8 213 77.0
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 1.1e-84 317.0 213 84.0
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.9e-84 316.2 214 85.5
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 5.6e-84 314.7 218 72.5
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 7.3e-84 314.3 213 81.7
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 1.6e-83 313.2 213 84.5
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 2.8e-83 312.4 213 81.7
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 3.6e-83 312.0 218 75.2
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 3.6e-83 312.0 213 84.0
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 4.7e-83 311.6 218 72.5
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 4.7e-83 311.6 218 72.0
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 6.2e-83 311.2 218 72.5
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 6.2e-83 311.2 215 69.3
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 8.0e-83 310.8 216 72.7
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 2.3e-82 309.3 218 72.0
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 2.3e-82 309.3 215 83.7
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 2.3e-82 309.3 214 81.3
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.2e-81 307.0 214 71.5
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 1.5e-81 306.6 218 68.8
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 1.5e-81 306.6 214 74.3
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 1.5e-81 306.6 215 83.3
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 2.6e-81 305.8 218 68.8
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 4.4e-81 305.1 214 82.2
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 7.5e-81 304.3 213 82.6
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 2.2e-80 302.8 218 68.3
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.9e-80 302.4 215 77.2
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 4.9e-80 301.6 213 81.7
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 1.1e-79 300.4 218 67.4
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 1.4e-79 300.1 213 80.8
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 1.9e-79 299.7 218 77.5
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 3.2e-79 298.9 214 79.9
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 3.2e-79 298.9 218 78.9
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 3.2e-79 298.9 213 81.2
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 4.1e-79 298.5 220 66.4
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 2.0e-78 296.2 218 80.3
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 2.7e-78 295.8 213 80.3
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 3.5e-78 295.4 215 79.5
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 3.5e-78 295.4 213 81.2
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 3.5e-78 295.4 214 66.8
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 3.5e-78 295.4 214 80.4
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 7.8e-78 294.3 215 80.5
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 7.8e-78 294.3 214 78.5
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 7.8e-78 294.3 213 80.3
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 1.7e-77 293.1 214 79.4
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 1.7e-77 293.1 213 81.2
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 2.3e-77 292.7 213 79.3
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 5.0e-77 291.6 214 79.0
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 5.0e-77 291.6 228 78.5
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 6.6e-77 291.2 240 62.9
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 8.6e-77 290.8 214 79.9
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 2.5e-76 289.3 223 75.8
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 2.5e-76 289.3 212 81.1
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 1.6e-75 286.6 214 65.9
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 1.1e-74 283.9 218 63.3
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 4.0e-74 282.0 253 64.0
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 4.0e-74 282.0 253 64.0
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 8.9e-74 280.8 189 86.2
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 9.8e-73 277.3 209 79.4
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 5.1e-69 265.0 214 76.6
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 2.5e-68 262.7 193 82.4
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 7.3e-68 261.2 239 69.0
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 7.3e-68 261.2 191 83.8
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 1.2e-67 260.4 218 60.1
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 1.2e-67 260.4 214 72.4
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 1.1e-66 257.3 249 64.3
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 1.1e-66 257.3 249 64.3
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.3e-66 256.1 215 69.8
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 3.1e-66 255.8 189 82.0
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 3.1e-66 255.8 242 55.8
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 4.0e-66 255.4 214 72.9
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 3.4e-65 252.3 215 68.8
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 9.2e-63 244.2 194 79.4
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 1.2e-62 243.8 139 82.7
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 4.6e-62 241.9 218 57.3
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 1.7e-61 240.0 180 82.2
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 2.8e-59 232.6 219 70.3
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 3.6e-59 232.3 188 79.3
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 8.9e-58 227.6 223 53.8
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 9.9e-57 224.2 167 67.1
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 1.7e-56 223.4 230 62.6
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 3.8e-56 222.2 171 82.5
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.1e-54 216.5 169 66.9
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 8.7e-53 211.1 181 59.7
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.6e-51 206.8 164 80.5
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.6e-51 206.8 164 80.5
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.7e-48 196.8 146 82.2
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 1.4e-47 193.7 150 85.3
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 3.5e-46 189.1 153 66.7
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 2.3e-45 186.4 216 60.2
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 2.3e-45 186.4 149 83.2
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 9.6e-44 181.0 172 57.0
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 2.8e-43 179.5 189 53.4
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 9.0e-42 174.5 215 58.1
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 2.0e-41 173.3 155 76.8
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 2.9e-40 169.5 140 65.0
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 2.9e-40 169.5 219 52.5
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 1.6e-38 163.7 140 59.3
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 3.5e-38 162.5 141 78.0
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 7.9e-38 161.4 141 61.7
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 1.8e-37 160.2 141 77.3
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 2.3e-37 159.8 139 80.6
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 2.3e-37 159.8 222 40.5
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 3.9e-37 159.1 139 79.1
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 8.7e-37 157.9 139 80.6
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 2.5e-36 156.4 208 44.2
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 4.8e-35 152.1 144 56.2
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 4.8e-35 152.1 142 56.3
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 4.8e-35 152.1 142 56.3
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.1e-34 149.4 74 87.8
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 5.3e-34 148.7 139 79.1
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 7.1e-31 138.3 141 70.2
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 7.1e-31 138.3 73 80.8
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.3e-29 134.0 133 74.4
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 2.3e-29 133.3 73 83.6
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 5.3e-26 122.1 142 47.9
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 2.0e-25 120.2 118 58.5
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 4.5e-25 119.0 197 39.1
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 8.5e-24 114.8 59 81.4
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.9e-23 113.6 141 65.2
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 3.6e-22 109.4 148 43.2
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 3.7e-19 99.4 132 36.4
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 4.1e-18 95.9 50 78.0
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 1.1e-12 77.8 86 46.5
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 7.4e-12 75.1 46 78.3
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 7.4e-12 75.1 46 78.3
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 9.7e-12 74.7 95 44.2
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 1.9e-07 60.5 100 38.0


User provided reference genes

Program Settings