Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G01839 Aquilegia oxysepala HOM05D002705 ORTHO05D009765 3.0e-165 585.1 296 100.0
Nn4g26472 Nelumbo nucifera HOM05D002705 ORTHO05D009765 1.2e-65 254.2 287 50.5
Nn3g20892 Nelumbo nucifera HOM05D002705 ORTHO05D009765 8.2e-62 241.5 243 52.7
TAR627G0723 Trochodendron aralioides HOM05D002705 ORTHO05D009765 1.9e-58 230.3 298 45.6
PGSC0003DMG400021284 Solanum tuberosum HOM05D002705 ORTHO05D009765 3.6e-49 199.5 294 38.1
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 6.1e-49 198.7 288 41.7
GSVIVG01020876001 Vitis vinifera HOM05D002705 ORTHO05D009765 1.8e-48 197.2 246 44.7
FAN14G4218 Fragaria x ananassa HOM05D002705 ORTHO05D009765 3.0e-48 196.4 288 42.0
FvH4_6g38280 Fragaria vesca HOM05D002705 ORTHO05D009765 3.9e-48 196.1 288 42.0
Peaxi162Scf00035g00292 Petunia axillaris HOM05D002705 ORTHO05D009765 3.9e-48 196.1 309 39.2
QL08p044244 Quercus lobata HOM05D002705 ORTHO05D009765 6.7e-48 195.3 271 41.7
Nitab4.5_0002027g0160 Nicotiana tabacum HOM05D002705 ORTHO05D009765 4.4e-47 192.6 299 38.1
Solyc10g007750.1 Solanum lycopersicum HOM05D002705 ORTHO05D009765 6.3e-46 188.7 287 38.7
PSO675G7613 Papaver somniferum HOM05D002705 ORTHO05D009765 3.1e-45 186.4 297 38.7
Dinv00192 Davidia involucrata HOM05D002705 ORTHO05D009765 5.3e-45 185.7 255 43.5
TPR.G16998 Trifolium pratense HOM05D002705 ORTHO05D009765 1.5e-44 184.1 302 39.7
CsaV3_6G038120 Cucumis sativus L. HOM05D002705 ORTHO05D009765 2.0e-44 183.7 283 38.2
Prupe.3G173400 Prunus persica HOM05D002705 ORTHO05D009765 2.0e-44 183.7 288 40.6
Medtr3g048300 Medicago truncatula HOM05D002705 ORTHO05D009765 3.4e-44 183.0 310 38.7
FAN09G3459 Fragaria x ananassa HOM05D002705 ORTHO05D009765 4.5e-44 182.6 271 40.2
Ciclev10033364m.g Citrus clementina HOM05D002705 ORTHO05D009765 2.9e-43 179.9 297 37.7
Hma1.2p1_0529F.1_g173240 Hydrangea macrophylla HOM05D002705 ORTHO05D009765 6.5e-43 178.7 272 40.4
MELO3C014476.2 Cucumis melo HOM05D002705 ORTHO05D009765 8.5e-43 178.3 282 37.2
Lalb_Chr03g0031241 Lupinus albus HOM05D002705 ORTHO05D009765 8.5e-43 178.3 291 39.5
Sed0010957 Sechium edule HOM05D002705 ORTHO05D009765 8.5e-43 178.3 285 38.2
Ca_12230_v3 Cicer arietinum L. HOM05D002705 ORTHO05D009765 1.9e-42 177.2 311 38.3
CSS0039583 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D009765 1.6e-41 174.1 299 39.1
arahy.Tifrunner.gnm1.ann1.4LV4GA Arachis hypogaea HOM05D002705 ORTHO05D009765 7.9e-41 171.8 277 37.2
Rhsim06G0115800 Rhododendron simsii HOM05D002705 ORTHO05D009765 7.9e-41 171.8 310 37.7
ClCG09G022450 Citrullus lanatus HOM05D002705 ORTHO05D009765 2.3e-40 170.2 250 39.2
Actinidia06118 Actinidia chinensis HOM05D002705 ORTHO05D009765 5.2e-40 169.1 285 40.4
Migut.M00492 Erythranthe guttata HOM05D002705 ORTHO05D009765 8.8e-40 168.3 294 38.1
Sed0024385 Sechium edule HOM05D002705 ORTHO05D009765 7.4e-39 165.2 280 36.4
Atru.chr6.2088 Acer truncatum HOM05D002705 ORTHO05D009765 1.1e-37 161.4 244 41.8
arahy.Tifrunner.gnm1.ann1.Y3CUXW Arachis hypogaea HOM05D002705 ORTHO05D009765 1.4e-37 161.0 289 34.3
SGA_v2.0_scaffold70G23654 Striga asiatica HOM05D002705 ORTHO05D009765 3.1e-37 159.8 298 34.6
MBI10_g34778_MAGBIO Magnolia biondii HOM05D002705 ORTHO05D009765 4.1e-37 159.5 206 41.7
Thecc.01G162500 Theobroma cacao HOM05D002705 ORTHO05D009765 4.1e-37 159.5 259 36.7
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 7.0e-37 158.7 285 33.3
SalBow8G3518 Salvia bowleyana HOM05D002705 ORTHO05D009765 1.6e-36 157.5 291 33.3
Glyma.18G107200 Glycine max HOM05D002705 ORTHO05D009765 2.6e-36 156.8 322 35.4
THA.LOC104802278 Tarenaya hassleriana HOM05D002705 ORTHO05D009765 4.5e-36 156.0 267 39.0
Duzib264G0970 Durio zibethinus HOM05D002705 ORTHO05D009765 2.9e-35 153.3 189 43.9
FAN02G0759 Fragaria x ananassa HOM05D002705 ORTHO05D009765 2.9e-35 153.3 202 44.6
Phvul.006G032900 Phaseolus vulgaris HOM05D002705 ORTHO05D009765 5.0e-35 152.5 256 37.5
Cpa.g.sc50.86 Carica papaya HOM05D002705 ORTHO05D009765 1.1e-34 151.4 251 37.1
HanXRQChr01g0007061 Helianthus annuus HOM05D002705 ORTHO05D009765 3.2e-34 149.8 266 37.2
Lsat_1_v5_gn_5_149781 Lactuca sativa HOM05D002705 ORTHO05D009765 3.2e-34 149.8 299 36.5
VMungo0540G0513 Vigna mungo HOM05D002705 ORTHO05D009765 4.2e-34 149.4 299 37.1
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 5.5e-34 149.1 269 32.3
Potri.005G202300 Populus trichocarpa HOM05D002705 ORTHO05D009765 2.7e-33 146.7 303 35.0
Lj6g0006663 Lotus japonicus HOM05D002705 ORTHO05D009765 8.0e-33 145.2 313 35.5
MSTRG.6743 Avicennia marina HOM05D002705 ORTHO05D009765 6.7e-32 142.1 266 34.2
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 4.4e-31 139.4 298 31.5
CARHR137970 Cardamine hirsuta HOM05D002705 ORTHO05D009765 4.4e-31 139.4 264 37.1
PSO017G2465 Papaver somniferum HOM05D002705 ORTHO05D009765 4.4e-31 139.4 294 35.0
DCAR_009797 Daucus carota HOM05D002705 ORTHO05D009765 5.7e-31 139.0 277 33.2
Manes.02G084700 Manihot esculenta HOM05D002705 ORTHO05D009765 5.7e-31 139.0 296 34.1
Sopen10g003660 Solanum pennellii HOM05D002705 ORTHO05D009765 7.5e-31 138.7 208 36.1
Ah.11g045780 Amaranthus hybridus HOM05D002705 ORTHO05D009765 1.4e-29 134.4 294 30.3
Sc21g0001660 Simmondsia chinensis HOM05D002705 ORTHO05D009765 1.4e-29 134.4 286 29.4
COL.COLO4_08449 Corchorus olitorius HOM05D000244 ORTHO05D009765 7.0e-29 132.1 255 34.5
RcHm_v2.0_Chr2g0151591 Rosa chinensis HOM05D002705 ORTHO05D009765 7.0e-29 132.1 177 42.9
Gorai.012G041100 Gossypium raimondii HOM05D002705 ORTHO05D009765 5.9e-28 129.0 197 40.6
C04p04000 Brassica napus HOM05D002705 ORTHO05D009765 7.7e-28 128.6 273 34.4
Carub.0004s2537 Capsella rubella HOM05D002705 ORTHO05D009765 1.0e-27 128.3 265 35.8
Aa31LG1G24660 Aethionema arabicum HOM05D000512 ORTHO05D000861 1.7e-27 127.5 264 35.2
Gohir.D04G036300 Gossypium hirsutum HOM05D002705 ORTHO05D009765 1.7e-27 127.5 197 39.6
BraA05t19329Z Brassica rapa HOM05D002705 ORTHO05D009765 2.2e-27 127.1 265 32.8
Sp4g25030 Schrenkiella parvula HOM05D002705 ORTHO05D009765 2.9e-27 126.7 260 35.4
A05p03430 Brassica napus HOM05D002705 ORTHO05D009765 3.8e-27 126.3 280 32.5
BcaC02g12424 Brassica carinata HOM05D002705 ORTHO05D009765 1.1e-26 124.8 273 34.1
BolC4t22036H Brassica oleracea HOM05D002705 ORTHO05D009765 1.1e-26 124.8 273 34.1
Os05g0582000 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D009765 1.1e-26 124.8 254 33.1
Gohir.A05G379200 Gossypium hirsutum HOM05D002705 ORTHO05D009765 1.9e-26 124.0 168 41.7
AT2G42900 Arabidopsis thaliana HOM05D002705 ORTHO05D009765 4.2e-26 122.9 273 33.7
Psat5g181640 Pisum sativum HOM05D002705 ORTHO05D009765 5.5e-26 122.5 203 36.5
Sabra05G0153700 Salix brachista HOM05D002705 ORTHO05D009765 7.2e-26 122.1 231 36.4
TAR627G0068 Trochodendron aralioides HOM05D002705 ORTHO05D009765 2.1e-25 120.6 135 46.7
Thhalv10017067m.g Eutrema salsugineum HOM05D002705 ORTHO05D009765 1.4e-24 117.9 260 33.8
Eucgr.K01214 Eucalyptus grandis HOM05D002705 ORTHO05D009765 5.7e-23 112.5 206 34.5
CDE09G0375 Ceratophyllum demersum HOM05D002705 ORTHO05D009765 2.8e-22 110.2 232 30.2
ATR0681G391 Amborella trichopoda HOM05D002705 ORTHO05D009765 4.8e-22 109.4 262 30.5
Zm00001eb297100 Zea mays HOM05D002705 ORTHO05D009765 5.9e-20 102.4 278 27.7
Zm00001eb344730 Zea mays HOM05D002705 ORTHO05D009765 1.3e-19 101.3 246 28.5
TWI59G0299 Tripterygium wilfordii HOM05D002705 ORTHO05D009765 2.5e-18 97.1 166 38.6
AL4G41540 Arabidopsis lyrata HOM05D002705 ORTHO05D009765 1.4e-16 91.3 186 33.9
CAN.G1546.3 Capsicum annuum HOM05D000541 ORTHO05D000137 8.3e-14 82.0 135 34.8
SalBow5G4254 Salvia bowleyana HOM05D002705 ORTHO05D009765 1.9e-10 70.9 309 24.6
Solyc01g080790.3 Solanum lycopersicum HOM05D001524 ORTHO05D001392 3.3e-10 70.1 244 27.5
unitig_62.g23106 Utricularia gibba HOM05D002705 ORTHO05D009765 9.5e-10 68.6 150 30.0
Sopen01g030690 Solanum pennellii HOM05D001524 ORTHO05D001392 1.0e-08 65.1 244 27.0
TWI31G0923 Tripterygium wilfordii HOM05D001524 ORTHO05D001392 1.4e-08 64.7 241 24.1
TWI79G1535 Tripterygium wilfordii HOM05D001524 ORTHO05D001392 1.8e-08 64.3 241 24.9
ECA240G3237 Erigeron canadensis HOM05D001524 ORTHO05D001392 3.0e-08 63.5 238 26.1
Nn3g18309 Nelumbo nucifera HOM05D001524 ORTHO05D001392 3.0e-08 63.5 250 24.8
Lsat_1_v5_gn_9_112100 Lactuca sativa HOM05D001524 ORTHO05D001392 1.2e-07 61.6 242 26.0
CiPaw.05G012500 Carya illinoinensis HOM05D001524 ORTHO05D001392 2.6e-07 60.5 243 24.3
ECA248G0079 Erigeron canadensis HOM05D002705 ORTHO05D009765 3.4e-07 60.1 118 33.1
Rhsim11G0157300 Rhododendron simsii HOM05D001524 ORTHO05D001392 3.4e-07 60.1 246 25.2
Cfa004596 Carpinus fangiana HOM05D001524 ORTHO05D001392 4.4e-07 59.7 244 23.8
AUR62039065 Chenopodium quinoa HOM05D001524 ORTHO05D001392 4.4e-07 59.7 248 23.4
ECA240G1859 Erigeron canadensis HOM05D001524 ORTHO05D001392 4.4e-07 59.7 243 25.1
PGR042G2142 Punica granatum HOM05D001524 ORTHO05D001392 4.4e-07 59.7 240 22.9
QL11p033161 Quercus lobata HOM05D001524 ORTHO05D001392 4.4e-07 59.7 244 23.4
PGSC0003DMG400006276 Solanum tuberosum HOM05D001524 ORTHO05D001392 4.4e-07 59.7 244 26.6
TAR628G1720 Trochodendron aralioides HOM05D001524 ORTHO05D001392 5.7e-07 59.3 242 25.2
Psat6g217560 Pisum sativum HOM05D001524 ORTHO05D001392 7.5e-07 58.9 247 24.3
QL11p033248 Quercus lobata HOM05D001524 ORTHO05D001392 7.5e-07 58.9 249 23.7
PGR042G2535 Punica granatum HOM05D001524 ORTHO05D001392 9.8e-07 58.5 239 21.8
SEGI_18471 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 9.8e-07 58.5 142 30.3
Nitab4.5_0001143g0040 Nicotiana tabacum HOM05D001524 ORTHO05D001392 1.3e-06 58.2 113 35.4
Cfa004595 Carpinus fangiana HOM05D001524 ORTHO05D001392 1.7e-06 57.8 246 23.6
Ca_11066_v3 Cicer arietinum L. HOM05D001524 ORTHO05D001392 1.7e-06 57.8 248 23.8
Lj1g0018373 Lotus japonicus HOM05D001524 ORTHO05D001392 1.7e-06 57.8 147 29.9
Nitab4.5_0004326g0040 Nicotiana tabacum HOM05D001524 ORTHO05D001392 1.7e-06 57.8 141 30.5
Nitab4.5_0011634g0010 Nicotiana tabacum HOM05D001524 ORTHO05D001392 1.7e-06 57.8 141 29.8
PGR042G1104 Punica granatum HOM05D001524 ORTHO05D001392 1.7e-06 57.8 256 25.4
RcHm_v2.0_Chr2g0151581 Rosa chinensis HOM05D002705 ORTHO05D009765 1.7e-06 57.8 60 48.3
Hma1.2p1_0796F.1_g219310 Hydrangea macrophylla HOM05D001524 ORTHO05D001392 2.2e-06 57.4 249 24.5
SEGI_23215 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 2.2e-06 57.4 120 34.2
Cc02_g19330 Coffea canephora HOM05D001524 ORTHO05D001392 2.9e-06 57.0 246 25.6
Cc03_g14200 Coffea canephora HOM05D001524 ORTHO05D001392 2.9e-06 57.0 254 24.4
HanXRQChr03g0070331 Helianthus annuus HOM05D001524 ORTHO05D001392 2.9e-06 57.0 242 24.0
Nitab4.5_0026736g0010 Nicotiana tabacum HOM05D001524 ORTHO05D001392 2.9e-06 57.0 141 29.8
SEGI_18619 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 2.9e-06 57.0 114 29.8
Cfa004593 Carpinus fangiana HOM05D001524 ORTHO05D001392 3.7e-06 56.6 248 23.0
Lsat_1_v5_gn_9_112561 Lactuca sativa HOM05D001524 ORTHO05D001392 3.7e-06 56.6 236 26.7
Psat7g250880 Pisum sativum HOM05D001524 ORTHO05D001392 3.7e-06 56.6 244 25.8
AL3G46920 Arabidopsis lyrata HOM05D001524 ORTHO05D001392 4.9e-06 56.2 250 24.8
CAN.G606.6 Capsicum annuum HOM05D001524 ORTHO05D001392 4.9e-06 56.2 257 25.7
Cfa021156 Carpinus fangiana HOM05D001524 ORTHO05D001392 4.9e-06 56.2 245 23.3
AUR62010320 Chenopodium quinoa HOM05D001524 ORTHO05D001392 4.9e-06 56.2 223 25.1
Lj5g0022504 Lotus japonicus HOM05D001524 ORTHO05D001392 4.9e-06 56.2 241 24.5
Nitab4.5_0001143g0050 Nicotiana tabacum HOM05D001524 ORTHO05D001392 4.9e-06 56.2 141 30.5
Psat6g223280 Pisum sativum HOM05D001524 ORTHO05D001392 4.9e-06 56.2 248 25.8
Rhsim11G0157200 Rhododendron simsii HOM05D001524 ORTHO05D001392 4.9e-06 56.2 245 22.4
AUR62010321 Chenopodium quinoa HOM05D001524 ORTHO05D001392 6.4e-06 55.8 141 29.1
Nitab4.5_0001143g0020 Nicotiana tabacum HOM05D001524 ORTHO05D001392 6.4e-06 55.8 140 30.7
EL10Ac9g22263 Beta vulgaris HOM05D001524 ORTHO05D001392 8.3e-06 55.5 165 27.9
CiPaw.05G012600 Carya illinoinensis HOM05D001524 ORTHO05D001392 8.3e-06 55.5 243 23.5
Rhsim11G0158900 Rhododendron simsii HOM05D001524 ORTHO05D001392 8.3e-06 55.5 141 28.4
Rhsim11G0159100 Rhododendron simsii HOM05D001524 ORTHO05D001392 8.3e-06 55.5 141 28.4
vmacro01996 Vaccinium macrocarpon HOM05D001524 ORTHO05D001392 8.3e-06 55.5 247 24.3


User provided reference genes

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