Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 0.0e+00 1753.0 911 100.0
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 0.0e+00 1246.9 922 73.2
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1206.4 912 68.9
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1199.9 912 68.3
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 0.0e+00 1175.6 861 72.0
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 0.0e+00 1155.6 921 66.1
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 0.0e+00 1140.2 924 67.3
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 0.0e+00 1133.2 912 65.4
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 0.0e+00 1128.6 915 66.7
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 0.0e+00 1127.1 920 65.0
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 0.0e+00 1121.3 922 66.3
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1120.9 916 64.7
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 0.0e+00 1114.4 921 63.6
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1109.0 914 65.8
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 0.0e+00 1108.2 924 63.7
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 0.0e+00 1107.4 853 68.2
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 0.0e+00 1105.5 915 63.7
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1105.1 922 63.3
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 0.0e+00 1104.4 929 65.1
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1104.0 914 65.4
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 0.0e+00 1104.0 925 65.4
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 0.0e+00 1103.2 922 63.7
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1102.0 997 60.6
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 0.0e+00 1097.8 918 64.3
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1095.9 936 62.7
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1082.0 936 62.4
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1079.7 917 63.9
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1078.9 924 63.9
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 0.0e+00 1078.5 929 61.5
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 0.0e+00 1077.4 917 61.0
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 0.0e+00 1075.8 925 62.1
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 5.6e-311 1070.8 910 64.8
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 3.6e-310 1068.1 924 61.0
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 5.2e-309 1064.3 918 63.4
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 1.5e-308 1062.8 921 61.2
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 4.4e-308 1061.2 911 62.7
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 5.8e-308 1060.8 920 62.7
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 1.4e-306 1056.2 957 61.5
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 5.0e-304 1047.7 967 58.7
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 5.0e-304 1047.7 924 60.7
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.9e-303 1045.8 914 59.8
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 5.6e-303 1044.3 922 62.5
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 2.8e-302 1042.0 917 61.9
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 2.3e-301 1038.9 922 61.1
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 1.3e-299 1033.1 878 63.2
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 4.9e-299 1031.2 1078 54.6
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 5.4e-298 1027.7 1086 54.1
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 7.1e-298 1027.3 933 59.7
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 2.7e-297 1025.4 982 58.6
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 9.5e-295 1016.9 877 62.1
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 3.1e-293 1011.9 920 59.2
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 1.2e-292 1010.0 907 60.5
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 4.4e-292 1008.1 928 59.3
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 1.3e-291 1006.5 946 59.6
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 9.2e-290 1000.3 910 59.7
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 1.0e-288 996.9 912 59.4
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 1.9e-287 992.6 926 58.5
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 9.0e-285 983.8 927 58.6
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 3.4e-284 981.9 917 59.3
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 7.6e-284 980.7 922 58.7
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 6.4e-283 977.6 926 58.1
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 3.2e-282 975.3 920 58.0
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 1.2e-281 973.4 909 56.5
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 3.5e-281 971.8 926 58.4
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 4.6e-281 971.5 920 57.8
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 2.1e-278 962.6 926 57.9
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 1.8e-277 959.5 911 58.4
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 3.4e-276 955.3 922 58.1
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 1.2e-273 946.8 911 57.6
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 2.5e-271 939.1 928 55.3
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 5.6e-271 937.9 866 59.0
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 7.4e-271 937.6 775 64.9
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 2.4e-269 932.6 909 56.5
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 2.4e-269 932.6 917 57.3
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 1.5e-268 929.9 931 55.6
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 1.3e-264 916.8 925 54.2
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 2.1e-262 909.4 862 56.6
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 3.7e-262 908.7 1011 50.7
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 8.2e-262 907.5 914 53.7
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 2.0e-260 902.9 923 56.0
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 1.0e-259 900.6 914 55.3
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 2.2e-259 899.4 930 55.8
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 2.9e-259 899.0 697 68.6
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 2.5e-258 896.0 932 54.5
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 9.7e-255 884.0 759 61.7
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 4.8e-254 881.7 917 52.5
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 4.2e-250 868.6 1154 45.9
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 1.6e-249 866.7 901 54.9
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 3.8e-243 845.5 642 72.3
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 9.7e-239 830.9 944 49.8
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 3.7e-238 828.9 738 62.7
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 6.3e-230 801.6 725 58.9
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 1.2e-225 787.3 777 55.6
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 2.4e-213 746.5 643 62.2
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 5.0e-195 685.6 599 61.1
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 9.8e-191 671.4 520 67.3
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 3.1e-184 649.8 574 62.5
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.1e-178 631.3 552 63.8
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 9.9e-175 618.2 915 42.2
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 6.4e-166 589.0 571 57.3
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 1.1e-157 561.6 431 65.2
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 3.7e-153 546.6 899 42.4
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 6.9e-152 542.3 920 37.6
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 1.3e-147 528.1 440 65.2
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 4.9e-142 509.6 897 36.8
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 1.1e-141 508.4 486 58.4
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 3.8e-134 483.4 917 35.4
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 2.7e-132 477.2 472 57.6
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 2.5e-130 470.7 609 45.8
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 5.1e-123 446.4 406 59.1
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 8.0e-108 396.0 301 69.1
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 2.7e-100 370.9 657 39.0
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 9.8e-98 362.5 574 40.4
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 2.2e-97 361.3 632 39.2
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 1.2e-92 345.5 243 76.5
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 2.1e-84 318.2 283 58.0
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 3.1e-83 314.3 339 52.5
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 4.9e-81 307.0 232 69.4
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 1.2e-79 302.4 610 36.7
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 2.0e-66 258.5 216 69.4
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 2.9e-65 254.6 297 52.5
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 3.9e-54 217.6 151 71.5
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 3.0e-46 191.4 152 64.5
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 1.2e-42 179.5 257 42.4
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 4.2e-40 171.0 124 69.4
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 8.4e-33 146.7 127 58.3
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 2.5e-32 145.2 101 73.3
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 2.8e-28 131.7 242 36.0
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 5.3e-27 127.5 120 57.5
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.5e-26 125.9 87 66.7
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 2.1e-23 115.5 145 51.0
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.5e-21 108.6 105 61.9
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 8.2e-20 103.6 165 38.8
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 9.0e-19 100.1 100 57.0
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 2.2e-17 95.5 140 42.1
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 3.2e-16 91.7 53 77.4
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 5.1e-14 84.3 82 59.8
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 8.2e-12 77.0 87 56.3
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.4e-11 76.3 113 41.6
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 9.1e-11 73.6 83 48.2
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 2.0e-10 72.4 134 41.0
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 3.4e-10 71.6 199 29.6
SEGI_33722 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 2.3e-06 58.9 105 42.9
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 5.1e-06 57.8 134 35.1
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 6.7e-06 57.4 68 41.2
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 6.7e-06 57.4 130 35.4


User provided reference genes

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