Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 0.0e+00 1554.3 776 100.0
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 7.9e-298 1026.9 744 69.6
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 4.6e-290 1001.1 741 68.3
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 1.8e-286 989.2 745 67.5
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 1.4e-278 963.0 742 65.4
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 3.1e-278 961.8 742 65.1
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 2.0e-277 959.1 746 63.8
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 3.4e-277 958.4 742 64.8
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 7.6e-277 957.2 742 65.0
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 3.8e-276 954.9 742 62.8
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 1.9e-275 952.6 745 64.3
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 4.2e-275 951.4 741 64.1
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 9.3e-275 950.3 742 63.7
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 2.3e-273 945.7 770 62.2
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.5e-272 943.0 746 62.7
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 2.5e-272 942.2 745 63.8
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 3.3e-272 941.8 721 65.6
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 3.3e-272 941.8 746 63.8
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 6.3e-271 937.6 741 62.3
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 6.9e-270 934.1 750 62.3
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 2.0e-269 932.6 742 62.5
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 1.3e-268 929.9 742 61.9
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 2.2e-268 929.1 745 62.3
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 2.2e-268 929.1 765 61.0
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 5.0e-268 927.9 749 62.6
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 5.0e-268 927.9 745 62.3
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.1e-267 926.8 745 62.3
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 1.1e-267 926.8 742 61.7
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 2.7e-266 922.2 742 61.5
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 7.9e-266 920.6 745 61.5
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 1.0e-265 920.2 742 61.2
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 2.3e-265 919.1 745 61.5
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.3e-265 919.1 745 61.7
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 5.1e-265 917.9 745 62.4
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 8.8e-265 917.1 745 61.9
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 1.5e-264 916.4 742 62.1
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 1.5e-264 916.4 744 60.9
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 6.3e-263 911.0 749 61.5
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 1.1e-262 910.2 744 60.9
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 1.4e-262 909.8 743 61.5
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 1.4e-262 909.8 744 60.5
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 2.4e-262 909.1 742 61.1
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 4.1e-262 908.3 742 60.9
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 4.1e-262 908.3 744 60.3
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 5.3e-262 907.9 746 61.1
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 1.5e-261 906.4 742 61.5
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 2.0e-261 906.0 742 61.1
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 1.0e-260 903.7 743 62.0
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 1.7e-260 902.9 745 59.9
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 2.2e-260 902.5 742 60.9
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 6.5e-260 901.0 745 60.5
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 1.1e-259 900.2 745 60.3
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 2.5e-259 899.0 745 60.4
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 3.2e-259 898.7 745 60.3
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 9.4e-259 897.1 747 61.4
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 1.6e-258 896.3 747 59.6
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 1.4e-257 893.3 746 60.1
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 7.4e-256 887.5 744 59.9
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 6.3e-255 884.4 811 58.0
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 2.6e-253 879.0 744 60.1
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 4.5e-253 878.2 745 58.9
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 5.9e-253 877.9 743 60.2
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 5.0e-252 874.8 745 60.0
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 2.7e-250 869.0 745 58.5
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 2.3e-249 865.9 745 58.5
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 1.1e-248 863.6 709 61.9
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 9.7e-248 860.5 745 58.3
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 1.2e-245 853.6 720 58.6
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 3.2e-243 845.5 745 56.8
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 5.5e-243 844.7 682 61.9
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 1.8e-241 839.7 720 58.1
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 4.0e-233 812.0 671 59.9
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 7.0e-230 801.2 769 54.6
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 9.5e-227 790.8 744 55.5
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 3.4e-224 782.3 607 62.3
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 1.7e-223 780.0 723 54.6
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 1.7e-223 780.0 748 54.8
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 2.2e-223 779.6 743 52.2
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 5.6e-219 765.0 744 52.8
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 1.2e-218 763.8 605 61.7
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 4.7e-218 761.9 607 59.6
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 8.3e-215 751.1 750 54.1
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 1.1e-214 750.7 686 57.1
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 7.3e-211 738.0 665 57.3
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 6.4e-207 724.9 642 59.2
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 2.3e-204 716.5 757 52.8
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 5.2e-201 705.3 638 56.3
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 2.7e-197 693.0 839 48.6
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 5.1e-196 688.7 492 67.1
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 8.6e-196 688.0 658 55.0
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 7.3e-195 684.9 635 54.8
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.9e-190 670.2 747 49.8
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.8e-186 656.4 457 70.7
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.5e-184 650.6 493 64.7
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 5.8e-184 648.7 747 49.0
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 2.5e-171 606.7 456 64.5
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 3.3e-171 606.3 537 57.9
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 1.3e-164 584.3 753 45.0
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 4.5e-160 569.3 753 43.4
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 3.7e-154 549.7 610 48.0
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 1.9e-150 537.3 455 61.5
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 7.2e-134 482.3 582 43.5
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 8.0e-133 478.8 450 53.8
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 9.4e-126 455.3 844 35.0
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 8.9e-116 422.2 623 42.4
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 7.8e-112 409.1 542 41.0
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 1.5e-110 404.8 379 54.1
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 8.0e-109 399.1 481 43.7
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 1.5e-107 394.8 345 58.3
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 4.1e-105 386.7 289 64.4
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.4e-97 361.7 472 43.0
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 6.2e-93 346.3 235 71.5
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 5.4e-73 280.0 255 58.8
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 1.6e-61 241.9 668 30.2
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.6e-59 234.6 184 63.6
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 3.8e-58 230.7 261 46.4
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 1.2e-56 225.7 319 43.6
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.3e-55 221.5 154 62.3
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 5.1e-55 220.3 303 38.9
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 7.6e-51 206.5 174 61.5
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 9.3e-49 199.5 243 49.4
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 4.6e-48 197.2 126 73.0
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 3.1e-44 184.5 126 70.6
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.4e-36 158.3 114 59.6
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.1e-33 149.4 100 68.0
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 5.5e-33 147.1 103 68.0
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 3.0e-31 141.4 169 48.5
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 3.5e-27 127.9 131 51.9
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 2.2e-18 98.6 77 58.4
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 1.5e-14 85.9 66 53.0
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 5.3e-12 77.4 280 26.4
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 5.3e-12 77.4 167 32.3
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 9.1e-12 76.6 61 52.5
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 1.1e-09 69.7 60 53.3
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 3.2e-09 68.2 44 68.2
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 1.2e-08 66.2 109 37.6
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 6.1e-08 63.9 44 65.9
BolC9t53455H Brassica oleracea HOM05D005479 ORTHO05D007416 1.8e-07 62.4 43 60.5
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 8.8e-07 60.1 39 64.1
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 9.8e-06 56.6 115 30.4


User provided reference genes

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