Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G01238 Aquilegia oxysepala HOM05D008287 ORTHO05D010110 1.5e-124 449.5 226 100.0
Nn2g10792 Nelumbo nucifera HOM05D008287 ORTHO05D010110 5.5e-18 95.5 84 64.3
TAR629G1172 Trochodendron aralioides HOM05D008287 ORTHO05D010110 2.7e-17 93.2 82 65.9
Actinidia38852 Actinidia chinensis HOM05D008287 ORTHO05D010110 2.0e-15 87.0 85 56.5
Thecc.10G073600 Theobroma cacao HOM05D008287 ORTHO05D010110 1.7e-14 84.0 90 55.6
Gohir.D13G023100 Gossypium hirsutum HOM05D008287 ORTHO05D010110 2.2e-14 83.6 92 52.2
MBI10_g13401_MAGBIO Magnolia biondii HOM05D008287 ORTHO05D010110 2.2e-14 83.6 87 55.2
Gohir.A13G024200 Gossypium hirsutum HOM05D008287 ORTHO05D010110 3.7e-14 82.8 92 52.2
Gorai.013G025800 Gossypium raimondii HOM05D008287 ORTHO05D010110 4.8e-14 82.4 93 51.6
Hma1.2p1_0063F.1_g034480 Hydrangea macrophylla HOM05D008287 ORTHO05D010110 4.8e-14 82.4 79 57.0
MSTRG.9186 Avicennia marina HOM05D008287 ORTHO05D010110 1.1e-13 81.3 81 58.0
Duzib114G0252 Durio zibethinus HOM05D008287 ORTHO05D010110 1.1e-13 81.3 93 54.8
Sc09g0006380 Simmondsia chinensis HOM05D008287 ORTHO05D010110 1.8e-13 80.5 84 56.0
CiPaw.01G272900 Carya illinoinensis HOM05D008287 ORTHO05D010110 4.1e-13 79.3 99 49.5
Sabra10G0172000 Salix brachista HOM05D008287 ORTHO05D010110 5.4e-13 79.0 89 55.1
Migut.F02005 Erythranthe guttata HOM05D008287 ORTHO05D010110 1.6e-12 77.4 86 53.5
PGSC0003DMG400012876 Solanum tuberosum HOM05D008287 ORTHO05D010110 3.5e-12 76.3 76 51.3
Manes.10G045900 Manihot esculenta HOM05D008287 ORTHO05D010110 5.9e-12 75.5 89 51.7
ClCG05G021010 Citrullus lanatus HOM05D008287 ORTHO05D010110 7.7e-12 75.1 91 57.1
CsaV3_5G036300 Cucumis sativus L. HOM05D008287 ORTHO05D010110 7.7e-12 75.1 93 57.0
Solyc04g049407.1 Solanum lycopersicum HOM05D008287 ORTHO05D010110 7.7e-12 75.1 82 52.4
Cfa021511 Carpinus fangiana HOM05D008287 ORTHO05D010110 1.0e-11 74.7 82 56.1
Prupe.2G213800 Prunus persica HOM05D008287 ORTHO05D010110 1.7e-11 73.9 91 46.2
Sopen04g019400 Solanum pennellii HOM05D008287 ORTHO05D010110 2.2e-11 73.6 76 47.4
Nitab4.5_0010206g0030 Nicotiana tabacum HOM05D008287 ORTHO05D010110 6.5e-11 72.0 130 40.0
Atru.chr12.751 Acer truncatum HOM05D008287 ORTHO05D010110 1.1e-10 71.2 87 48.3
Lalb_Chr19g0129701 Lupinus albus HOM05D008287 ORTHO05D010110 1.1e-10 71.2 87 48.3
Rhsim09G0151900 Rhododendron simsii HOM05D008287 ORTHO05D010110 1.5e-10 70.9 96 45.8
Glyma.16G154900 Glycine max HOM05D008287 ORTHO05D010110 1.9e-10 70.5 90 51.1
Ciclev10033160m.g Citrus clementina HOM05D008287 ORTHO05D010110 2.5e-10 70.1 98 49.0
Glyma.02G073500 Glycine max HOM05D008287 ORTHO05D010110 3.2e-10 69.7 93 47.3
Potri.010G222400 Populus trichocarpa HOM05D008287 ORTHO05D010110 3.2e-10 69.7 90 48.9
unitig_899.g14438 Utricularia gibba HOM05D008287 ORTHO05D010110 3.2e-10 69.7 77 48.1
Nitab4.5_0000575g0160 Nicotiana tabacum HOM05D008287 ORTHO05D010110 9.4e-10 68.2 80 45.0
Sed0007335 Sechium edule HOM05D008287 ORTHO05D010110 1.2e-09 67.8 92 52.2
Atru.chr12.776 Acer truncatum HOM05D008287 ORTHO05D010110 1.6e-09 67.4 93 49.5
MD01G1108600 Malus domestica HOM05D008287 ORTHO05D010110 2.1e-09 67.0 95 47.4
Phvul.004G082500 Phaseolus vulgaris HOM05D008287 ORTHO05D010110 2.7e-09 66.6 89 48.3
VMungo0464G1886 Vigna mungo HOM05D008287 ORTHO05D010110 2.7e-09 66.6 88 48.9
HanXRQChr01g0011461 Helianthus annuus HOM05D008287 ORTHO05D010110 3.6e-09 66.2 83 43.4
Potri.008G039901 Populus trichocarpa HOM05D008287 ORTHO05D010110 1.4e-08 64.3 90 37.8
ECA238G2524 Erigeron canadensis HOM05D008287 ORTHO05D010110 2.6e-07 60.1 76 40.8
FAN01G1692 Fragaria x ananassa HOM05D008287 ORTHO05D010110 4.4e-07 59.3 49 61.2
Medtr6g033505 Medicago truncatula HOM05D008287 ORTHO05D010110 4.4e-07 59.3 87 47.1
FAN10G2561 Fragaria x ananassa HOM05D008287 ORTHO05D010110 5.7e-07 58.9 49 61.2
TPR.G822 Trifolium pratense HOM05D008287 ORTHO05D010110 7.5e-07 58.5 91 45.1
Sabra08G0027300 Salix brachista HOM05D008287 ORTHO05D010110 1.7e-06 57.4 36 69.4
CSS0035042 Camellia sinensis var. sinensis HOM05D008287 ORTHO05D010110 2.2e-06 57.0 32 75.0
FvH4_7g19600 Fragaria vesca HOM05D008287 ORTHO05D010110 2.8e-06 56.6 49 59.2
FAN06G2349 Fragaria x ananassa HOM05D000286 ORTHO05D009721 2.8e-06 56.6 88 43.2
AL8G22370 Arabidopsis lyrata HOM05D013386 ORTHO05D010110 3.7e-06 56.2 84 44.0
Cc06_g14360 Coffea canephora HOM05D008287 ORTHO05D010110 3.7e-06 56.2 97 42.3
RcHm_v2.0_Chr1g0363411 Rosa chinensis HOM05D008287 ORTHO05D010110 3.7e-06 56.2 84 42.9
AT5G49015 Arabidopsis thaliana HOM05D013386 ORTHO05D010110 4.9e-06 55.8 84 44.0
Carub.0008s0883 Capsella rubella HOM05D013386 ORTHO05D010110 4.9e-06 55.8 85 45.9
Thhalv10005354m.g Eutrema salsugineum HOM05D013386 ORTHO05D010110 8.3e-06 55.1 86 43.0
SGA_v2.0_scaffold62G21430 Striga asiatica HOM05D008287 ORTHO05D010110 8.3e-06 55.1 60 48.3


User provided reference genes

Program Settings