Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 3.2e-235 818.1 446 100.0
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 4.3e-139 498.8 467 60.0
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 7.3e-139 498.0 471 59.9
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 2.0e-136 490.0 467 59.5
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 6.4e-135 485.0 469 59.3
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 4.7e-130 468.8 471 57.5
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 1.4e-129 467.2 475 56.2
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 8.7e-124 448.0 482 52.7
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 1.9e-123 446.8 486 53.5
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 7.3e-123 444.9 488 54.5
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 1.3e-122 444.1 475 53.5
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 1.6e-122 443.7 460 55.0
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 4.0e-121 439.1 469 52.9
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 1.5e-120 437.2 483 55.7
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 5.8e-120 435.3 462 53.9
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 2.2e-119 433.3 476 53.4
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 3.8e-119 432.6 470 54.0
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 8.4e-119 431.4 476 53.6
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 1.1e-118 431.0 470 51.5
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 1.4e-118 430.6 472 53.6
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 3.2e-118 429.5 473 54.3
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 2.1e-117 426.8 482 54.1
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 2.7e-117 426.4 467 52.9
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 6.0e-117 425.2 473 54.3
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 5.1e-116 422.2 464 52.8
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 1.1e-115 421.0 476 52.5
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 1.5e-115 420.6 477 51.6
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 2.5e-115 419.9 461 52.9
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 3.3e-115 419.5 464 51.5
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 4.3e-115 419.1 467 52.5
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 4.3e-115 419.1 457 51.9
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 4.3e-115 419.1 473 52.4
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 7.3e-115 418.3 477 51.2
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 9.6e-115 417.9 469 50.3
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 1.6e-114 417.2 465 52.5
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 1.6e-114 417.2 467 51.2
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 8.1e-114 414.8 481 52.2
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 1.4e-113 414.1 451 51.9
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 2.4e-113 413.3 480 50.2
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.4e-112 409.5 451 51.9
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 4.5e-112 409.1 460 52.8
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 9.9e-112 407.9 463 51.8
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.3e-111 407.5 454 51.8
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.1e-110 404.4 456 50.7
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 1.4e-110 404.1 474 48.5
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.9e-110 403.7 456 50.7
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 2.4e-110 403.3 477 50.5
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 3.2e-110 402.9 454 49.3
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 5.4e-110 402.1 456 50.4
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 9.3e-110 401.4 454 49.8
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 1.6e-109 400.6 451 51.0
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 1.8e-108 397.1 451 50.6
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 1.1e-107 394.4 480 47.5
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 7.4e-107 391.7 481 49.7
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 9.6e-107 391.3 460 48.3
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 3.7e-106 389.4 484 47.9
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.8e-105 387.1 449 47.9
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 3.1e-105 386.3 449 48.3
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 9.0e-105 384.8 449 48.1
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 1.5e-104 384.0 468 49.1
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 2.6e-104 383.3 482 48.3
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 5.8e-104 382.1 463 46.9
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 2.9e-103 379.8 425 49.6
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 3.8e-103 379.4 472 47.9
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.1e-102 377.9 450 48.0
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 4.2e-102 375.9 452 47.8
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 7.1e-102 375.2 472 47.0
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 9.3e-102 374.8 472 47.2
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 2.1e-101 373.6 465 48.6
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 2.1e-101 373.6 457 47.5
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 2.1e-101 373.6 465 46.7
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 1.0e-100 371.3 468 45.9
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 1.6e-98 364.0 467 46.3
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 4.8e-98 362.5 467 45.8
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 2.4e-97 360.1 467 45.6
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 2.4e-97 360.1 453 47.5
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 4.0e-97 359.4 461 45.3
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 4.0e-97 359.4 599 39.4
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 6.9e-97 358.6 463 45.6
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 9.0e-97 358.2 452 47.8
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 7.6e-96 355.1 479 44.1
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 1.3e-95 354.4 444 47.7
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 2.9e-95 353.2 439 47.2
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 3.8e-95 352.8 517 41.4
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 6.5e-95 352.1 439 47.2
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 1.6e-93 347.4 438 46.3
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 6.1e-93 345.5 453 45.7
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 5.7e-91 339.0 474 44.5
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 9.7e-91 338.2 440 48.6
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 2.8e-90 336.7 469 42.6
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 3.7e-90 336.3 432 46.1
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.8e-89 334.0 399 49.9
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 2.4e-89 333.6 475 43.6
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 1.5e-88 330.9 466 41.8
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 1.7e-87 327.4 342 54.7
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 1.7e-87 327.4 467 45.6
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 2.2e-87 327.0 467 42.4
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 3.8e-87 326.2 262 61.1
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 8.5e-87 325.1 585 37.8
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 3.2e-86 323.2 272 59.2
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 3.2e-86 323.2 432 46.5
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.2e-85 321.2 460 42.0
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 2.7e-85 320.1 460 41.7
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 3.0e-84 316.6 469 43.7
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 6.7e-84 315.5 469 41.2
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 9.7e-83 311.6 478 41.2
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 2.2e-82 310.5 442 43.2
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 3.7e-82 309.7 251 61.0
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.8e-82 309.3 251 60.6
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.8e-82 309.3 251 60.6
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 2.4e-81 307.0 462 41.3
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 6.5e-79 298.9 260 59.2
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 3.6e-77 293.1 433 40.0
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 1.5e-72 277.7 377 45.1
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 1.0e-71 275.0 459 37.7
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.7e-71 274.2 355 48.7
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 1.5e-70 271.2 456 37.1
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 2.7e-69 266.9 447 41.2
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 8.0e-69 265.4 462 40.9
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 2.3e-68 263.8 261 54.4
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 3.0e-68 263.5 443 40.6
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 4.4e-67 259.6 428 39.5
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 2.3e-60 237.3 441 35.1
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 7.2e-54 215.7 312 45.8
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 1.2e-53 214.9 469 33.0
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 8.8e-52 208.8 445 36.2
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 3.4e-51 206.8 326 43.9
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 2.2e-50 204.1 419 33.2
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 8.3e-50 202.2 454 31.5
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 7.0e-49 199.1 443 32.7
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 1.1e-46 191.8 441 35.1
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 2.3e-39 167.5 257 47.5
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.6e-35 154.1 437 30.4
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 7.5e-35 152.5 212 38.7
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 6.0e-32 142.9 136 52.2
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 5.0e-31 139.8 158 60.1
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 7.3e-30 136.0 115 64.3
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 4.4e-27 126.7 192 35.9
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.3e-26 125.2 254 32.3
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.7e-26 124.8 106 55.7
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 7.3e-22 109.4 160 45.0
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 9.5e-22 109.0 160 44.4
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.7e-21 106.7 150 46.7
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 8.1e-21 105.9 269 27.5
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.8e-20 104.8 152 46.7
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 5.8e-19 99.8 99 47.5
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.3e-18 98.6 156 44.9
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 1.9e-17 94.7 84 59.5
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 1.9e-17 94.7 447 24.8
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 1.2e-16 92.0 429 26.1
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 7.3e-14 82.8 113 45.1
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 1.2e-13 82.0 115 40.9
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.2e-12 76.6 67 64.2
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.5e-11 75.1 68 63.2
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 2.0e-11 74.7 212 29.7
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.8e-11 73.2 63 60.3
FAN05G5296 Fragaria x ananassa HOM05D004355 ORTHO05D005228 7.6e-11 72.8 68 60.3
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 2.4e-09 67.8 121 42.1
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 2.4e-09 67.8 121 42.1


User provided reference genes

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