Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 2074.7 1079 100.0
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1786.2 1080 85.8
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1768.8 1081 84.5
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1729.1 1089 82.2
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1711.0 1081 81.7
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1704.1 1080 81.1
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1688.7 1083 81.7
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1687.2 1079 81.4
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1683.7 1083 81.7
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1680.2 1080 80.2
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1669.8 1080 80.2
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1667.5 1080 80.0
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1661.0 1080 79.4
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1659.0 1080 79.9
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1651.3 1080 79.5
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1649.0 1079 78.8
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1641.7 1075 78.8
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1640.6 1079 78.8
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1637.1 1079 78.1
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1625.1 1078 77.6
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1623.6 1078 78.2
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1620.5 1080 77.5
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1614.4 1080 77.6
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1610.1 1078 77.6
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1607.4 1079 77.2
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1604.3 1079 77.1
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1602.0 1079 76.9
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1599.7 1078 76.8
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1596.3 1078 77.2
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1592.4 1078 77.0
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1590.5 1081 76.7
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1588.5 1035 79.6
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1585.1 1078 77.0
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1583.5 1090 76.2
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1582.4 1051 78.3
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1578.9 1081 75.2
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1577.0 1085 76.0
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1573.9 1094 75.4
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1573.5 1161 73.0
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1561.6 1078 75.8
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1560.0 1078 75.3
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1559.7 1080 74.7
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1555.8 1079 73.8
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1555.8 1080 74.8
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1550.4 1078 75.9
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1548.5 1080 75.9
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1545.0 1081 74.6
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1538.9 1114 74.2
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1529.6 1102 73.3
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1528.8 1080 73.6
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1527.7 1003 79.6
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1520.0 1080 73.2
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1519.6 1084 74.0
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1513.4 1079 74.5
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1511.1 1080 72.8
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1502.3 1080 72.6
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1468.8 1080 71.0
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1467.6 1080 71.1
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1466.8 1080 70.8
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1466.4 1077 71.3
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1464.1 1096 70.5
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1457.6 1078 72.8
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1452.2 948 79.4
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1449.1 1080 70.3
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1449.1 1080 69.9
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1441.4 994 75.8
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1439.9 1096 69.0
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1439.5 1096 69.0
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1438.3 1081 69.6
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1437.6 1179 66.9
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1435.2 1155 69.0
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1427.9 1129 69.2
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1427.2 1085 68.8
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1425.6 1078 70.2
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1424.5 1100 68.1
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1421.4 1115 67.5
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1421.0 1077 69.8
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1417.9 1081 68.5
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1416.0 1115 66.6
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1416.0 1079 70.0
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1413.3 1077 70.6
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1403.3 1109 68.1
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1402.9 1100 67.4
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1396.7 1100 67.3
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1395.9 1068 68.2
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1391.3 1066 68.5
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1381.7 1080 67.4
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1379.0 1095 68.9
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 0.0e+00 1377.5 1029 71.0
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1376.7 1100 66.7
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 0.0e+00 1363.6 1109 65.9
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1362.8 1118 67.4
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 0.0e+00 1362.8 1080 67.0
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1360.9 1046 69.7
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1360.9 1070 66.1
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 0.0e+00 1352.8 1080 66.8
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1338.2 1085 65.7
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1325.8 1080 66.5
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1321.2 1068 67.0
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1309.7 1182 63.9
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 1291.9 1258 58.8
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1284.6 1064 66.0
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 0.0e+00 1252.3 912 72.7
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 0.0e+00 1237.6 883 74.0
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 0.0e+00 1222.2 1071 63.2
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 0.0e+00 1203.0 745 82.7
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 0.0e+00 1194.1 1087 61.1
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1107.0 920 65.0
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 5.8e-307 1057.7 1089 54.1
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 8.6e-303 1043.9 1103 52.6
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 1.9e-302 1042.7 727 75.4
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 2.2e-298 1029.2 983 59.2
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 1.5e-283 979.9 843 64.7
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 6.7e-279 964.5 634 80.0
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 3.4e-275 952.2 1094 50.2
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 3.4e-267 925.6 1086 49.0
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 3.8e-250 869.0 1063 47.7
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 9.4e-249 864.4 778 62.0
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 1.5e-225 787.3 516 79.5
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 6.8e-215 751.9 566 70.8
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 2.4e-212 743.4 572 69.4
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 1.2e-208 731.1 566 67.3
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 2.6e-206 723.4 709 58.1
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 3.9e-202 709.5 589 65.5
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 7.5e-198 695.3 845 50.5
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 6.4e-197 692.2 808 49.6
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 3.9e-194 682.9 536 70.3
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 1.4e-191 674.5 1241 36.6
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 3.9e-170 603.2 431 73.1
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 9.9e-166 588.6 401 76.6
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 1.2e-150 538.5 376 76.6
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 4.1e-143 513.5 395 68.1
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 5.1e-138 496.5 350 74.3
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 8.5e-133 479.2 359 73.0
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 7.7e-126 456.1 366 69.9
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 8.0e-123 446.0 322 74.5
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 8.8e-122 442.6 351 67.5
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 3.6e-115 420.6 272 82.4
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 5.0e-109 400.2 284 73.9
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.9e-100 371.7 371 56.3
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 1.7e-88 332.0 228 78.1
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 3.6e-75 287.7 177 79.7
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 6.0e-70 270.4 194 75.8
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 2.7e-62 245.0 162 77.2
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 8.7e-61 240.0 143 80.4
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 2.2e-56 225.3 139 79.1
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 2.7e-54 218.4 129 87.6
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 4.8e-51 207.6 116 87.1
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 2.1e-46 192.2 139 67.6
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 1.9e-39 169.1 121 70.2
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 2.1e-38 165.6 181 51.9
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 2.7e-38 165.2 96 84.4
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 3.7e-35 154.8 103 74.8
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 6.3e-35 154.1 113 72.6
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 1.1e-34 153.3 169 51.5
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 4.1e-34 151.4 101 72.3
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 1.4e-31 142.9 106 66.0
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 7.9e-30 137.1 86 69.8
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 1.3e-29 136.3 89 80.9
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 5.1e-29 134.4 87 73.6
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 8.7e-29 133.7 92 76.1
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 9.0e-26 123.6 79 69.6
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 3.4e-25 121.7 201 34.3
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 3.4e-25 121.7 79 69.6
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 5.0e-24 117.9 86 67.4
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 1.4e-21 109.8 81 63.0
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 3.3e-20 105.1 100 58.0
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 1.1e-15 90.1 84 63.1
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 1.1e-15 90.1 84 63.1
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 6.1e-14 84.3 62 71.0
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 6.1e-14 84.3 62 71.0
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 1.8e-13 82.8 49 85.7
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 1.5e-12 79.7 65 61.5
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 3.3e-12 78.6 48 83.3
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 2.4e-10 72.4 53 67.9
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 3.1e-10 72.0 55 65.5
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 5.3e-10 71.2 52 71.2
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 1.0e-08 67.0 52 59.6


User provided reference genes

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