Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G01011 Aquilegia oxysepala HOM05D003900 ORTHO05D016547 4.7e-61 237.7 117 100.0
Aqoxy1G01008 Aquilegia oxysepala HOM05D003900 ORTHO05D016547 2.0e-27 125.9 117 59.0
Aqoxy2G02642 Aquilegia oxysepala HOM05D003900 ORTHO05D016547 2.3e-23 112.5 98 53.1
Aqoxy7G01321 Aquilegia oxysepala HOM05D003900 ORTHO05D019476 4.4e-19 98.2 96 51.0
Aqoxy4G01268 Aquilegia oxysepala HOM05D003900 ORTHO05D016547 7.8e-16 87.4 67 59.7
Gorai.004G160200 Gossypium raimondii HOM05D040893 ORTHO05D016547 5.1e-15 84.7 95 45.3
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 1.9e-14 82.8 140 33.6
MELO3C029134.2 Cucumis melo HOM05D003900 ORTHO05D005009 2.5e-14 82.4 71 54.9
Ah.15g096610 Amaranthus hybridus HOM05D003900 ORTHO05D005009 3.1e-12 75.5 99 36.4
CsaV3_7G025780 Cucumis sativus L. HOM05D003900 ORTHO05D005009 2.0e-11 72.8 141 31.9
Aa31LG10G15460 Aethionema arabicum HOM05D003900 ORTHO05D005009 8.3e-10 67.4 76 43.4
BcaC08g45129 Brassica carinata HOM05D003900 ORTHO05D005009 1.9e-09 66.2 147 27.2
DCAR_026955 Daucus carota HOM05D001779 ORTHO05D001753 9.2e-09 63.9 114 28.9
PGR031G1510 Punica granatum HOM05D001779 ORTHO05D001753 1.6e-08 63.2 114 31.6
Sp3g05350 Schrenkiella parvula HOM05D001779 ORTHO05D001753 2.1e-08 62.8 114 29.8
Aa31LG5G16950 Aethionema arabicum HOM05D001779 ORTHO05D001753 2.7e-08 62.4 114 29.8
Eucgr.A01491 Eucalyptus grandis HOM05D001779 ORTHO05D001753 2.7e-08 62.4 114 30.7
Lj6A699G68 Lonicera japonica HOM05D001779 ORTHO05D001753 2.7e-08 62.4 114 28.9
Oeu012215.1 Olea europaea HOM05D001779 ORTHO05D001753 2.7e-08 62.4 114 28.9
CANSAT01G0558 Cannabis sativa HOM05D001779 ORTHO05D001753 3.5e-08 62.0 114 29.8
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 6.0e-08 61.2 102 29.4
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 6.0e-08 61.2 103 33.0
Zm00001eb298940 Zea mays HOM05D001779 ORTHO05D001753 6.0e-08 61.2 116 30.2
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 7.8e-08 60.8 103 30.1
Prupe.1G106700 Prunus persica HOM05D001779 ORTHO05D001753 7.8e-08 60.8 114 30.7
COL.COLO4_34526 Corchorus olitorius HOM05D001779 ORTHO05D001753 1.0e-07 60.5 114 28.9
Gohir.A10G176300 Gossypium hirsutum HOM05D001779 ORTHO05D001753 1.0e-07 60.5 114 29.8
Gohir.D10G183000 Gossypium hirsutum HOM05D001779 ORTHO05D001753 1.0e-07 60.5 114 29.8
Gorai.011G205100 Gossypium raimondii HOM05D001779 ORTHO05D001753 1.0e-07 60.5 114 29.8
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 1.3e-07 60.1 95 30.5
THA.LOC104818854 Tarenaya hassleriana HOM05D001779 ORTHO05D001753 1.3e-07 60.1 114 29.8
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 1.7e-07 59.7 103 30.1
DCAR_013239 Daucus carota HOM05D007390 ORTHO05D009114 1.7e-07 59.7 88 34.1
MD13G1141500 Malus domestica HOM05D001779 ORTHO05D001753 1.7e-07 59.7 114 31.6
MD16G1137800 Malus domestica HOM05D001779 ORTHO05D001753 1.7e-07 59.7 114 31.6
Potri.014G090400 Populus trichocarpa HOM05D003900 ORTHO05D005009 1.7e-07 59.7 69 40.6
BcaB01g00827 Brassica carinata HOM05D002460 ORTHO05D002716 2.3e-07 59.3 105 26.7
Thecc.04G311700 Theobroma cacao HOM05D001779 ORTHO05D001753 2.3e-07 59.3 114 28.1
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 2.3e-07 59.3 103 31.1
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 3.0e-07 58.9 91 31.9
Duzib151G0917 Durio zibethinus HOM05D001779 ORTHO05D001753 3.0e-07 58.9 112 29.5
Lalb_Chr04g0259301 Lupinus albus HOM05D003900 ORTHO05D005009 3.0e-07 58.9 77 41.6
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 3.0e-07 58.9 91 31.9
RcHm_v2.0_Chr7g0228291 Rosa chinensis HOM05D003900 ORTHO05D005009 3.0e-07 58.9 114 28.9
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 3.9e-07 58.5 103 33.0
Sopen10g021030 Solanum pennellii HOM05D007173 ORTHO05D009151 3.9e-07 58.5 87 36.8
PGSC0003DMG401009781 Solanum tuberosum HOM05D007173 ORTHO05D009151 3.9e-07 58.5 87 36.8
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 3.9e-07 58.5 103 32.0
Aqoxy4G01271 Aquilegia oxysepala HOM05D000855 ORTHO05D016547 5.1e-07 58.2 75 38.7
Thhalv10020626m.g Eutrema salsugineum HOM05D001779 ORTHO05D001753 5.1e-07 58.2 114 29.8
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 6.6e-07 57.8 87 34.5
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 6.6e-07 57.8 103 30.1
MBI13_g05942_MAGBIO Magnolia biondii HOM05D007335 ORTHO05D009113 8.6e-07 57.4 90 33.3
Medtr4g123860 Medicago truncatula HOM05D001779 ORTHO05D001753 8.6e-07 57.4 114 28.1
ATR0796G248 Amborella trichopoda HOM05D001779 ORTHO05D001753 1.1e-06 57.0 115 25.2
AL3G17380 Arabidopsis lyrata HOM05D001779 ORTHO05D001753 1.1e-06 57.0 114 28.9
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 1.1e-06 57.0 103 29.1
Manes.05G029400 Manihot esculenta HOM05D003900 ORTHO05D005009 1.1e-06 57.0 99 31.3
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 1.5e-06 56.6 93 29.0
AT3G06430 Arabidopsis thaliana HOM05D001779 ORTHO05D001753 1.5e-06 56.6 114 28.9
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 1.5e-06 56.6 102 28.4
BcaB04g17087 Brassica carinata HOM05D002453 ORTHO05D008746 1.9e-06 56.2 120 31.7
Lalb_Chr22g0350751 Lupinus albus HOM05D007335 ORTHO05D009113 1.9e-06 56.2 102 34.3
QL07p033370 Quercus lobata HOM05D020603 ORTHO05D019575 1.9e-06 56.2 106 27.4
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 2.5e-06 55.8 96 32.3
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 2.5e-06 55.8 96 32.3
MBI13_g43948_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D019275 2.5e-06 55.8 90 33.3
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 2.5e-06 55.8 102 29.4
Os03g0309800 Oryza sativa ssp. japonica HOM05D001779 ORTHO05D001753 2.5e-06 55.8 116 27.6
Sabra14G0065500 Salix brachista HOM05D003900 ORTHO05D005009 2.5e-06 55.8 69 36.2
EL10Ac5g11420 Beta vulgaris HOM05D007168 ORTHO05D009495 3.3e-06 55.5 89 30.3
CARHR042130 Cardamine hirsuta HOM05D007352 ORTHO05D009389 3.3e-06 55.5 109 26.6
ClCG06G004250 Citrullus lanatus HOM05D001779 ORTHO05D001753 3.3e-06 55.5 114 29.8
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.3e-06 55.5 94 30.9
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.3e-06 55.5 102 27.5
MBI17_g35770_MAGBIO Magnolia biondii HOM05D001779 ORTHO05D001753 3.3e-06 55.5 114 26.3
Solyc10g049570.3 Solanum lycopersicum HOM05D007173 ORTHO05D009151 3.3e-06 55.5 87 35.6
VMungo0251G1173 Vigna mungo HOM05D003900 ORTHO05D005009 3.3e-06 55.5 71 36.6
CARHR043560 Cardamine hirsuta HOM05D002453 ORTHO05D008746 4.3e-06 55.1 82 39.0
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 4.3e-06 55.1 100 28.0
Ciclev10004807m.g Citrus clementina HOM05D001779 ORTHO05D001753 4.3e-06 55.1 112 28.6
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 4.3e-06 55.1 102 25.5
SGA_v2.0_scaffold117G32408 Striga asiatica HOM05D002479 ORTHO05D002675 4.3e-06 55.1 124 29.0
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 4.3e-06 55.1 97 29.9
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 5.6e-06 54.7 102 28.4
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 5.6e-06 54.7 102 28.4
CARHR080960 Cardamine hirsuta HOM05D001779 ORTHO05D001753 5.6e-06 54.7 114 28.9
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 5.6e-06 54.7 92 30.4
Migut.M00051 Erythranthe guttata HOM05D000162 ORTHO05D000090 5.6e-06 54.7 95 33.7
FvH4_6g18940 Fragaria vesca HOM05D008470 ORTHO05D010644 5.6e-06 54.7 122 27.9
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 5.6e-06 54.7 86 31.4
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 5.6e-06 54.7 102 26.5
TPR.G2949 Trifolium pratense HOM05D003900 ORTHO05D005009 5.6e-06 54.7 71 38.0
TAR633G1519 Trochodendron aralioides HOM05D017878 ORTHO05D018225 5.6e-06 54.7 89 32.6
ATR0580G437 Amborella trichopoda HOM05D030519 ORTHO05D021219 7.3e-06 54.3 116 26.7
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 7.3e-06 54.3 96 32.3
Cpa.g.sc9.15 Carica papaya HOM05D007409 ORTHO05D009264 7.3e-06 54.3 91 30.8
FvH4_3g42580 Fragaria vesca HOM05D000002 ORTHO05D000001 7.3e-06 54.3 116 23.3
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 7.3e-06 54.3 94 29.8
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 7.3e-06 54.3 94 29.8
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 7.3e-06 54.3 94 29.8
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 7.3e-06 54.3 94 29.8
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 7.3e-06 54.3 94 29.8
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 7.3e-06 54.3 94 29.8
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 7.3e-06 54.3 102 28.4
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 7.3e-06 54.3 112 25.9
PSO832G0330 Papaver somniferum HOM05D001779 ORTHO05D001753 7.3e-06 54.3 115 25.2
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 7.3e-06 54.3 103 28.2
QL10p016708 Quercus lobata HOM05D002453 ORTHO05D002107 7.3e-06 54.3 102 27.5
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 9.5e-06 53.9 105 29.5
Duzib138G1643 Durio zibethinus HOM05D003900 ORTHO05D005009 9.5e-06 53.9 100 27.0
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 9.5e-06 53.9 103 29.1
FAN11G0418 Fragaria x ananassa HOM05D003757 ORTHO05D000090 9.5e-06 53.9 116 23.3
Lsat_1_v5_gn_3_39301 Lactuca sativa HOM05D002479 ORTHO05D002675 9.5e-06 53.9 114 30.7
Os05g0365500 Oryza sativa ssp. japonica HOM05D002825 ORTHO05D003824 9.5e-06 53.9 119 24.4
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 9.5e-06 53.9 105 27.6
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 9.5e-06 53.9 111 27.0


User provided reference genes

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