Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G00878 Aquilegia oxysepala HOM05D006297 ORTHO05D007873 3.3e-175 618.6 393 100.0
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 9.8e-55 218.4 396 42.4
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 9.5e-50 201.8 427 37.5
Manes.02G129500 Manihot esculenta HOM05D006297 ORTHO05D007873 8.1e-49 198.7 393 41.2
QL01p030412 Quercus lobata HOM05D006297 ORTHO05D007873 8.9e-48 195.3 443 37.7
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 7.5e-47 192.2 386 39.6
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 1.3e-46 191.4 380 45.5
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 2.9e-46 190.3 386 37.0
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 4.9e-46 189.5 427 36.5
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 1.1e-45 188.3 368 38.0
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 1.4e-45 188.0 350 40.0
Nn2g13426 Nelumbo nucifera HOM05D006297 ORTHO05D007873 1.4e-45 188.0 452 45.1
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 3.2e-45 186.8 373 39.4
ClCG03G001300 Citrullus lanatus HOM05D006297 ORTHO05D007873 1.2e-44 184.9 370 38.9
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 2.1e-44 184.1 357 41.2
CiPaw.13G089900 Carya illinoinensis HOM05D006297 ORTHO05D007873 6.0e-44 182.6 424 40.6
Potri.009G035300 Populus trichocarpa HOM05D006297 ORTHO05D007873 3.9e-43 179.9 409 35.2
Migut.D00880 Erythranthe guttata HOM05D006297 ORTHO05D007873 1.5e-42 177.9 449 35.4
CANSAT54G0582 Cannabis sativa HOM05D006297 ORTHO05D007873 1.9e-42 177.6 476 39.9
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 1.9e-42 177.6 394 37.3
Ciclev10029821m.g Citrus clementina HOM05D006297 ORTHO05D007873 2.5e-42 177.2 380 38.7
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 9.5e-42 175.3 388 38.1
Haze_24152 Corylus avellana HOM05D006297 ORTHO05D007873 6.2e-41 172.6 404 35.9
Potri.001G243900 Populus trichocarpa HOM05D006297 ORTHO05D007873 1.1e-40 171.8 439 34.4
Sopen06g032780 Solanum pennellii HOM05D006297 ORTHO05D007873 1.8e-40 171.0 368 34.8
Solyc06g076370.4 Solanum lycopersicum HOM05D006297 ORTHO05D007873 8.9e-40 168.7 369 35.0
MSTRG.18559 Avicennia marina HOM05D006297 ORTHO05D007873 3.4e-39 166.8 474 32.7
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 4.4e-39 166.4 382 34.3
MD11G1095400 Malus domestica HOM05D006297 ORTHO05D007873 1.3e-38 164.9 397 42.3
Sc12g0001260 Simmondsia chinensis HOM05D006297 ORTHO05D007873 1.3e-38 164.9 391 36.3
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 8.4e-38 162.2 379 35.6
Thecc.09G316300 Theobroma cacao HOM05D006297 ORTHO05D007873 1.1e-37 161.8 423 34.3
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 3.2e-37 160.2 370 34.6
Eucgr.B02311 Eucalyptus grandis HOM05D006297 ORTHO05D007873 9.2e-37 158.7 406 45.1
Duzib168G2114 Durio zibethinus HOM05D006297 ORTHO05D007873 1.2e-36 158.3 402 34.8
AUR62001745 Chenopodium quinoa HOM05D006297 ORTHO05D007873 1.6e-36 157.9 464 34.5
Cc01_g13310 Coffea canephora HOM05D006297 ORTHO05D007873 1.6e-36 157.9 434 32.0
Ca_20618_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 1.0e-35 155.2 476 32.4
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 5.1e-35 152.9 423 43.5
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 1.1e-34 151.8 333 36.3
Sed0011562 Sechium edule HOM05D006297 ORTHO05D007873 1.9e-34 151.0 362 34.8
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 5.6e-34 149.4 392 35.7
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 5.6e-34 149.4 392 35.7
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 5.6e-34 149.4 392 35.7
COL.COLO4_18571 Corchorus olitorius HOM05D006297 ORTHO05D007873 4.7e-33 146.4 391 33.2
Cfa011548 Carpinus fangiana HOM05D006297 ORTHO05D007873 1.4e-32 144.8 411 32.4
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 3.1e-32 143.7 427 32.6
MBI05_g35633_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 5.2e-32 142.9 313 35.8
Medtr4g064830 Medicago truncatula HOM05D006297 ORTHO05D007873 5.2e-32 142.9 478 33.7
Lalb_Chr22g0352441 Lupinus albus HOM05D006297 ORTHO05D007873 4.4e-31 139.8 377 36.9
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 4.4e-31 139.8 430 36.0
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 1.7e-30 137.9 393 32.8
Carub.0005s1301 Capsella rubella HOM05D006297 ORTHO05D007873 1.7e-30 137.9 431 34.8
AT3G46750 Arabidopsis thaliana HOM05D006297 ORTHO05D007873 2.9e-30 137.1 428 33.6
CARHR154920 Cardamine hirsuta HOM05D006297 ORTHO05D007873 6.4e-30 136.0 429 30.8
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 3.2e-29 133.7 367 32.4
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 5.4e-29 132.9 437 31.1
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 7.1e-29 132.5 376 31.1
AL5G25730 Arabidopsis lyrata HOM05D006297 ORTHO05D007873 1.6e-28 131.3 428 34.8
BolC1t03251H Brassica oleracea HOM05D000026 ORTHO05D007873 2.1e-28 131.0 354 32.5
BcaB05g23510 Brassica carinata HOM05D006297 ORTHO05D007873 2.7e-28 130.6 348 33.9
PGSC0003DMG400030329 Solanum tuberosum HOM05D006297 ORTHO05D007873 4.6e-28 129.8 380 29.2
A01p26050 Brassica napus HOM05D006297 ORTHO05D007873 7.8e-28 129.0 354 32.2
Lj3g0014453 Lotus japonicus HOM05D006297 ORTHO05D007873 1.0e-27 128.6 480 33.3
BcaC09g49771 Brassica carinata HOM05D006297 ORTHO05D007873 1.3e-27 128.3 354 31.9
Nn2g11187 Nelumbo nucifera HOM05D006297 ORTHO05D007873 2.3e-27 127.5 321 34.9
Sabra16G0148100 Salix brachista HOM05D000026 ORTHO05D000094 2.3e-27 127.5 363 34.2
Psat7g210960 Pisum sativum HOM05D006297 ORTHO05D007873 5.1e-27 126.3 489 33.5
SGA_v2.0_scaffold54G19479 Striga asiatica HOM05D006297 ORTHO05D007873 6.6e-27 125.9 403 30.3
BraA01t02522Z Brassica rapa HOM05D006297 ORTHO05D007873 8.7e-27 125.6 311 33.8
CSS0015831 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 1.1e-26 125.2 417 33.1
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 4.3e-26 123.2 367 34.9
Dinv17042 Davidia involucrata HOM05D006297 ORTHO05D007873 4.3e-26 123.2 123 60.2
Dinv43112 Davidia involucrata HOM05D006297 ORTHO05D007873 4.3e-26 123.2 123 60.2
FvH4_3g36910 Fragaria vesca HOM05D006297 ORTHO05D007873 4.3e-26 123.2 584 31.7
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 5.6e-26 122.9 532 36.3
TPR.G23574 Trifolium pratense HOM05D006297 ORTHO05D007873 5.6e-26 122.9 430 33.3
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 2.8e-25 120.6 352 33.5
Glyma.12G060000 Glycine max HOM05D006297 ORTHO05D007873 2.8e-25 120.6 450 31.3
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 4.8e-25 119.8 174 46.0
AUR62020026 Chenopodium quinoa HOM05D006297 ORTHO05D007873 1.1e-24 118.6 419 32.7
Lalb_Chr03g0026471 Lupinus albus HOM05D006297 ORTHO05D007873 1.1e-24 118.6 399 32.3
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 1.8e-24 117.9 174 45.4
Lalb_Chr01g0003491 Lupinus albus HOM05D006297 ORTHO05D007873 1.2e-23 115.2 453 31.3
Glyma.11G136300 Glycine max HOM05D006297 ORTHO05D007873 3.4e-23 113.6 455 34.3
Glyma.13G338800 Glycine max HOM05D006297 ORTHO05D007873 7.6e-23 112.5 455 29.0
Gohir.D07G104500 Gossypium hirsutum HOM05D006297 ORTHO05D007873 1.3e-22 111.7 388 30.9
Phvul.011G061900 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 4.9e-22 109.8 362 32.3
Glyma.15G035500 Glycine max HOM05D006297 ORTHO05D007873 1.4e-21 108.2 445 29.0
unitig_899.g15423 Utricularia gibba HOM05D006297 ORTHO05D007873 2.4e-21 107.5 301 33.9
Lj3g0003832 Lotus japonicus HOM05D006297 ORTHO05D007873 1.2e-20 105.1 314 32.2
Lsat_1_v5_gn_8_72960 Lactuca sativa HOM05D006297 ORTHO05D007873 4.6e-20 103.2 361 31.0
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 1.8e-19 101.3 348 33.9
VMungo1127G1804 Vigna mungo HOM05D006297 ORTHO05D007873 3.9e-19 100.1 374 35.0
arahy.Tifrunner.gnm1.ann1.NT76K4 Arachis hypogaea HOM05D006297 ORTHO05D007873 7.4e-18 95.9 391 29.7
EL10Ac7g16061 Beta vulgaris HOM05D006297 ORTHO05D007873 1.3e-17 95.1 157 44.6
Psat5g118640 Pisum sativum HOM05D006297 ORTHO05D007873 1.6e-17 94.7 149 44.3
Hma1.2p1_0757F.1_g213410 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 2.1e-17 94.4 114 52.6
SalBow6G6944 Salvia bowleyana HOM05D006297 ORTHO05D007873 2.1e-17 94.4 494 35.8
Duzib170G0989 Durio zibethinus HOM05D006297 ORTHO05D007873 3.7e-17 93.6 317 30.0
FAN25G2608 Fragaria x ananassa HOM05D006297 ORTHO05D007873 8.1e-17 92.4 176 43.2
arahy.Tifrunner.gnm1.ann1.FG1CRE Arachis hypogaea HOM05D006297 ORTHO05D007873 1.1e-16 92.0 391 29.4
FAN11G1892 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.4e-16 91.7 584 26.9
Medtr2g097710 Medicago truncatula HOM05D006297 ORTHO05D007873 2.4e-16 90.9 148 43.9
arahy.Tifrunner.gnm1.ann1.19P32Y Arachis hypogaea HOM05D006297 ORTHO05D007873 3.1e-16 90.5 110 53.6
arahy.Tifrunner.gnm1.ann1.2MBI16 Arachis hypogaea HOM05D006297 ORTHO05D007873 3.1e-16 90.5 110 53.6
C01p33140 Brassica napus HOM05D006297 ORTHO05D007873 5.3e-16 89.7 306 29.7
Ca_01304_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 5.3e-16 89.7 152 42.8
Hund04923 Selenicereus undatus HOM05D006297 ORTHO05D007873 2.6e-15 87.4 416 30.0
Lalb_Chr24g0397191 Lupinus albus HOM05D006297 ORTHO05D007873 3.4e-15 87.0 159 42.8
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 1.3e-14 85.1 382 26.4
CiPaw.14G065800 Carya illinoinensis HOM05D006297 ORTHO05D007873 1.7e-14 84.7 414 27.5
FAN16G1466 Fragaria x ananassa HOM05D006297 ORTHO05D007873 2.2e-14 84.3 560 27.9
TPR.G6873 Trifolium pratense HOM05D006297 ORTHO05D007873 2.2e-14 84.3 172 36.0
Ah.08g219890 Amaranthus hybridus HOM05D006297 ORTHO05D007873 8.4e-14 82.4 114 45.6
FAN21G2693 Fragaria x ananassa HOM05D006297 ORTHO05D007873 3.2e-13 80.5 582 26.6
Phvul.L008043 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 3.2e-13 80.5 143 39.2
MBI14_g08019_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 6.0e-12 76.3 308 30.5
SalBow1G2607 Salvia bowleyana HOM05D006297 ORTHO05D007873 6.7e-11 72.8 82 50.0
BcaB02g10710 Brassica carinata HOM05D006297 ORTHO05D007873 1.5e-10 71.6 286 29.7
Dinv17043 Davidia involucrata HOM05D006297 ORTHO05D007873 3.3e-10 70.5 122 43.4
Dinv43111 Davidia involucrata HOM05D006297 ORTHO05D007873 3.3e-10 70.5 122 43.4
CDE07G0208 Ceratophyllum demersum HOM05D006297 ORTHO05D007873 1.6e-09 68.2 86 45.3
Dinv42987 Davidia involucrata HOM05D006297 ORTHO05D007873 4.8e-09 66.6 401 26.2
VMungo1080G0409 Vigna mungo HOM05D006297 ORTHO05D007873 6.2e-09 66.2 146 36.3
HanXRQChr05g0135261 Helianthus annuus HOM05D006297 ORTHO05D007873 9.0e-08 62.4 310 28.1
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 1.5e-07 61.6 90 41.1
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 4.5e-07 60.1 144 31.9
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 7.6e-07 59.3 107 39.3
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 7.6e-07 59.3 167 30.5
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 1.0e-06 58.9 150 32.0
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 1.0e-06 58.9 147 29.3
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.3e-06 58.5 136 33.1
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 1.3e-06 58.5 135 30.4
QL10p061553 Quercus lobata HOM05D006297 ORTHO05D007873 1.7e-06 58.2 104 39.4
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 2.9e-06 57.4 91 39.6
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.9e-06 57.4 96 42.7
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 3.8e-06 57.0 88 35.2
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 4.9e-06 56.6 94 42.6
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 4.9e-06 56.6 87 37.9
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 4.9e-06 56.6 149 29.5
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 6.5e-06 56.2 111 32.4
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 8.4e-06 55.8 111 32.4
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 8.4e-06 55.8 98 38.8
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 8.4e-06 55.8 91 35.2


User provided reference genes

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