Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 1.2e-229 799.7 449 100.0
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 1.2e-160 570.5 445 73.7
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 1.6e-149 533.5 449 68.4
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 3.0e-148 529.3 448 69.4
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 1.9e-147 526.6 465 66.7
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 6.9e-145 518.1 449 67.5
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 6.9e-145 518.1 449 67.5
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 1.3e-143 513.8 448 67.4
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 1.9e-142 510.0 446 67.7
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 2.4e-142 509.6 449 65.9
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 7.1e-142 508.1 446 65.9
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 1.6e-141 506.9 446 66.1
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 7.8e-141 504.6 446 67.7
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 3.0e-140 502.7 446 67.7
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 5.1e-140 501.9 445 65.2
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 6.2e-138 495.0 446 65.2
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 5.3e-137 491.9 447 66.0
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 1.2e-136 490.7 446 65.2
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.2e-136 490.7 448 64.7
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 1.5e-136 490.3 447 65.5
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.0e-136 490.0 447 64.2
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 2.6e-136 489.6 448 64.3
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 3.4e-136 489.2 439 65.1
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 3.4e-136 489.2 449 63.7
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 3.4e-136 489.2 446 65.0
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 4.5e-136 488.8 452 65.3
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 2.2e-135 486.5 444 66.2
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.9e-135 486.1 447 64.0
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.8e-135 485.7 447 63.5
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 3.8e-135 485.7 447 63.8
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 4.9e-135 485.3 447 63.1
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 4.9e-135 485.3 456 63.2
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 4.9e-135 485.3 447 65.3
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 2.4e-134 483.0 425 66.8
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 5.4e-134 481.9 448 62.9
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 1.6e-133 480.3 440 66.1
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 2.7e-133 479.6 409 68.7
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 4.6e-133 478.8 445 62.9
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 5.6e-131 471.9 448 62.3
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 7.4e-131 471.5 447 61.5
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 2.8e-130 469.5 449 60.6
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 6.2e-130 468.4 445 62.0
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 1.8e-129 466.8 453 60.5
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 1.5e-128 463.8 446 61.0
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 2.6e-128 463.0 449 61.0
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 5.8e-128 461.8 447 62.2
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 9.9e-128 461.1 450 61.6
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 1.3e-127 460.7 446 61.2
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 1.7e-127 460.3 450 60.7
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 2.9e-127 459.5 456 59.2
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 4.9e-127 458.8 444 60.1
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 8.4e-127 458.0 448 61.2
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 8.4e-127 458.0 448 61.8
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 1.4e-126 457.2 449 61.0
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 2.5e-126 456.4 423 64.8
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 3.2e-126 456.1 449 58.8
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 1.2e-125 454.1 445 60.7
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 3.5e-125 452.6 454 59.9
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 3.5e-125 452.6 451 59.4
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 3.5e-125 452.6 452 62.6
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 6.0e-125 451.8 455 60.0
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 6.0e-125 451.8 450 60.2
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 2.3e-124 449.9 456 59.9
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 3.9e-124 449.1 449 59.2
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 3.9e-124 449.1 447 60.0
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 1.5e-123 447.2 446 59.4
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 4.3e-123 445.7 465 58.1
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 9.6e-123 444.5 453 59.2
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 9.6e-123 444.5 443 60.3
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 1.6e-122 443.7 448 61.6
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 2.1e-122 443.4 442 60.2
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 2.1e-122 443.4 446 60.8
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 2.8e-122 443.0 446 58.7
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 4.8e-122 442.2 459 58.2
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 9.0e-121 438.0 447 58.6
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 1.2e-120 437.6 443 59.6
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 1.3e-119 434.1 458 58.3
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 1.1e-118 431.0 444 58.6
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 4.2e-118 429.1 443 58.7
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 1.2e-117 427.6 448 57.4
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 1.9e-115 420.2 454 58.6
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 2.2e-114 416.8 448 59.4
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 3.7e-114 416.0 491 55.2
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 8.2e-114 414.8 445 57.5
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 9.0e-113 411.4 448 56.5
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.7e-111 407.1 388 61.9
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 5.0e-111 405.6 437 58.6
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 5.0e-111 405.6 437 58.6
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 5.0e-111 405.6 420 59.3
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 1.2e-109 401.0 476 54.2
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 4.6e-109 399.1 452 57.1
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 5.1e-108 395.6 445 56.0
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 4.3e-107 392.5 460 54.1
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 1.9e-102 377.1 446 55.2
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 1.9e-102 377.1 445 54.8
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 4.2e-102 375.9 436 54.6
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 1.1e-99 367.9 374 58.0
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 1.1e-97 361.3 459 51.6
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.0e-97 358.6 356 59.6
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 9.1e-97 358.2 432 53.9
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 2.0e-96 357.1 364 61.8
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 6.1e-93 345.5 458 49.3
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 9.7e-91 338.2 327 62.1
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 2.2e-87 327.0 419 50.6
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 2.7e-85 320.1 443 46.3
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.0e-85 318.5 403 50.6
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 2.0e-83 313.9 392 50.0
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 2.9e-79 300.1 471 45.0
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 1.1e-78 298.1 399 49.6
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 2.1e-77 293.9 274 63.1
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 3.4e-75 286.6 282 59.6
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 2.0e-64 250.8 224 65.2
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 1.7e-58 231.1 243 57.6
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 1.1e-57 228.4 348 46.6
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.9e-57 227.6 206 64.1
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 9.5e-54 215.3 372 44.9
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 9.5e-54 215.3 275 53.5
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 5.4e-49 199.5 246 55.7
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.2e-48 198.4 324 44.8
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 3.5e-48 196.8 371 39.6
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 7.8e-48 195.7 200 57.0
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 3.9e-47 193.4 369 40.7
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 1.6e-45 188.0 452 34.5
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 6.0e-40 169.5 270 46.7
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 3.0e-39 167.2 447 33.1
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 7.3e-38 162.5 153 60.8
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 2.1e-37 161.0 179 53.6
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.4e-36 158.3 202 50.0
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 7.6e-35 152.5 132 64.4
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 8.7e-31 139.0 160 53.1
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 1.4e-28 131.7 197 45.7
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 1.5e-27 128.3 134 57.5
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.9e-24 115.9 173 45.1
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 1.1e-17 95.5 94 60.6
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 1.9e-17 94.7 67 74.6
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 7.1e-17 92.8 89 61.8
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 9.3e-17 92.4 108 55.6
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.8e-15 88.2 62 77.4
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 3.9e-15 87.0 143 44.8
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 9.0e-12 75.9 190 38.4
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 1.9e-09 68.2 69 60.9
Cre01.g043400 Chlamydomonas reinhardtii HOM05D005278 ORTHO05D006500 3.0e-07 60.8 215 27.4


User provided reference genes

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