Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G00489 Aquilegia oxysepala HOM05D006263 ORTHO05D007549 3.7e-199 698.0 342 100.0
Nn7g35844 Nelumbo nucifera HOM05D006263 ORTHO05D007549 1.5e-147 526.6 341 73.9
TAR623G0038 Trochodendron aralioides HOM05D006263 ORTHO05D007549 1.8e-145 519.6 342 74.9
PSO339G1401 Papaver somniferum HOM05D006263 ORTHO05D007549 2.3e-145 519.2 340 73.8
PSO384G1918 Papaver somniferum HOM05D006263 ORTHO05D007549 8.9e-145 517.3 339 73.2
Dinv14580 Davidia involucrata HOM05D006263 ORTHO05D007549 5.4e-142 508.1 342 70.8
GSVIVG01033398001 Vitis vinifera HOM05D006263 ORTHO05D007549 4.6e-141 505.0 336 71.4
COL.COLO4_13602 Corchorus olitorius HOM05D006263 ORTHO05D007549 1.5e-139 500.0 338 69.8
Haze_19416 Corylus avellana HOM05D006263 ORTHO05D007549 3.3e-139 498.8 342 69.3
Haze_19445 Corylus avellana HOM05D006263 ORTHO05D007549 7.3e-139 497.7 342 69.3
Cfa016439 Carpinus fangiana HOM05D006263 ORTHO05D007549 2.1e-138 496.1 344 69.5
Oeu060008.1 Olea europaea HOM05D006263 ORTHO05D007549 1.1e-137 493.8 343 68.5
Gohir.A11G259300 Gossypium hirsutum HOM05D006263 ORTHO05D007549 5.2e-137 491.5 338 68.0
Gorai.007G289300 Gossypium raimondii HOM05D006263 ORTHO05D007549 5.2e-137 491.5 338 68.3
Gohir.D11G269500 Gossypium hirsutum HOM05D006263 ORTHO05D007549 3.4e-136 488.8 338 68.0
Lj2A357T95 Lonicera japonica HOM05D006263 ORTHO05D007549 4.4e-136 488.4 343 70.0
C09p58780 Brassica napus HOM05D006263 ORTHO05D007549 1.3e-135 486.9 337 67.7
ClCG05G001960 Citrullus lanatus HOM05D006263 ORTHO05D007549 2.9e-135 485.7 340 67.6
DCAR_013689 Daucus carota HOM05D006263 ORTHO05D007549 2.9e-135 485.7 341 67.7
Manes.09G141600 Manihot esculenta HOM05D006263 ORTHO05D007549 4.9e-135 485.0 338 68.0
Rhsim04G0087300 Rhododendron simsii HOM05D006263 ORTHO05D007549 6.4e-135 484.6 344 67.7
BraA10t44195Z Brassica rapa HOM05D006263 ORTHO05D007549 1.1e-134 483.8 338 66.9
A10p21320 Brassica napus HOM05D006263 ORTHO05D007549 1.4e-134 483.4 338 67.2
Potri.006G233200 Populus trichocarpa HOM05D006263 ORTHO05D007549 1.4e-134 483.4 338 68.3
BcaC04g18720 Brassica carinata HOM05D006263 ORTHO05D007549 1.9e-134 483.0 337 67.4
MELO3C006156.2 Cucumis melo HOM05D006263 ORTHO05D007549 1.9e-134 483.0 338 67.2
TWI34G1357 Tripterygium wilfordii HOM05D006263 ORTHO05D007549 1.9e-134 483.0 346 66.5
Duzib177G1028 Durio zibethinus HOM05D006263 ORTHO05D007549 2.4e-134 482.6 338 68.9
Potri.019G034400 Populus trichocarpa HOM05D006263 ORTHO05D007549 3.2e-134 482.3 341 68.6
Thecc.05G294200 Theobroma cacao HOM05D006263 ORTHO05D007549 3.2e-134 482.3 338 67.5
Thhalv10013996m.g Eutrema salsugineum HOM05D006263 ORTHO05D007549 9.2e-134 480.7 337 67.4
CSS0025413 Camellia sinensis var. sinensis HOM05D006263 ORTHO05D007549 1.2e-133 480.3 342 68.1
Sp6g26120 Schrenkiella parvula HOM05D006263 ORTHO05D007549 1.6e-133 479.9 337 67.7
BolC9t58720H Brassica oleracea HOM05D006263 ORTHO05D007549 2.7e-133 479.2 338 66.6
CiPaw.10G000900 Carya illinoinensis HOM05D006263 ORTHO05D007549 2.7e-133 479.2 338 67.8
Carub.0006s1648 Capsella rubella HOM05D006263 ORTHO05D007549 3.5e-133 478.8 336 67.6
BcaB08g36696 Brassica carinata HOM05D006263 ORTHO05D007549 4.6e-133 478.4 335 67.8
Nitab4.5_0002825g0060 Nicotiana tabacum HOM05D006263 ORTHO05D007549 7.8e-133 477.6 336 67.0
Sabra19G0044500 Salix brachista HOM05D006263 ORTHO05D007549 7.8e-133 477.6 337 68.5
AT5G18200 Arabidopsis thaliana HOM05D006263 ORTHO05D007549 1.0e-132 477.2 336 67.0
Atru.chr2.1379 Acer truncatum HOM05D006263 ORTHO05D007549 1.3e-132 476.9 347 67.4
THA.LOC104827270 Tarenaya hassleriana HOM05D006263 ORTHO05D007549 1.7e-132 476.5 340 67.1
TAR369G0989 Trochodendron aralioides HOM05D006263 ORTHO05D007549 1.7e-132 476.5 340 70.6
CARHR194860 Cardamine hirsuta HOM05D006263 ORTHO05D007549 1.1e-131 473.8 340 65.9
Prupe.7G003700 Prunus persica HOM05D006263 ORTHO05D007549 2.5e-131 472.6 341 66.0
Glyma.16G153300 Glycine max HOM05D006263 ORTHO05D007549 3.3e-131 472.2 346 66.2
Solyc10g050850.2 Solanum lycopersicum HOM05D006263 ORTHO05D007549 4.3e-131 471.9 336 66.1
Nitab4.5_0000001g0100 Nicotiana tabacum HOM05D006263 ORTHO05D007549 7.3e-131 471.1 336 65.5
PGSC0003DMG400008259 Solanum tuberosum HOM05D006263 ORTHO05D007549 7.3e-131 471.1 336 66.7
AL6G29400 Arabidopsis lyrata HOM05D006263 ORTHO05D007549 9.6e-131 470.7 336 67.3
Sopen10g022420 Solanum pennellii HOM05D006263 ORTHO05D007549 1.2e-130 470.3 336 66.4
CAN.G216.5 Capsicum annuum HOM05D006263 ORTHO05D007549 2.1e-130 469.5 336 66.1
Lj6g0008715 Lotus japonicus HOM05D006263 ORTHO05D007549 2.1e-130 469.5 340 65.3
Ciclev10020896m.g Citrus clementina HOM05D006263 ORTHO05D007549 4.7e-130 468.4 341 65.4
Psat1g096040 Pisum sativum HOM05D006263 ORTHO05D007549 4.7e-130 468.4 339 64.6
Cc06_g22910 Coffea canephora HOM05D006263 ORTHO05D007549 6.2e-130 468.0 342 64.6
QL07p019666 Quercus lobata HOM05D006263 ORTHO05D007549 8.1e-130 467.6 352 64.2
Phvul.004G080400 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 1.4e-129 466.8 340 66.8
VMungo0464G2181 Vigna mungo HOM05D006263 ORTHO05D007549 1.4e-129 466.8 343 66.8
MD12G1003100 Malus domestica HOM05D006263 ORTHO05D007549 5.2e-129 464.9 348 64.9
Lalb_Chr06g0173981 Lupinus albus HOM05D006263 ORTHO05D007549 6.9e-129 464.5 345 65.2
HPP92_015639 Vanilla planifolia HOM05D006263 ORTHO05D007549 1.2e-128 463.8 343 64.1
ECA285G0004 Erigeron canadensis HOM05D006263 ORTHO05D007549 3.4e-128 462.2 343 65.0
HanXRQChr01g0024721 Helianthus annuus HOM05D006263 ORTHO05D007549 2.2e-127 459.5 347 63.7
SGA_v2.0_scaffold145G36025 Striga asiatica HOM05D006263 ORTHO05D007549 2.9e-127 459.1 340 62.4
Lsat_1_v5_gn_1_59641 Lactuca sativa HOM05D006263 ORTHO05D007549 3.8e-127 458.8 342 63.2
Sabra19G0042300 Salix brachista HOM05D006263 ORTHO05D007549 6.4e-127 458.0 383 60.6
Hund06464 Selenicereus undatus HOM05D006263 ORTHO05D007549 1.4e-126 456.8 345 63.8
Migut.B01469 Erythranthe guttata HOM05D006263 ORTHO05D007549 4.2e-126 455.3 339 63.1
Medtr6g029470 Medicago truncatula HOM05D006263 ORTHO05D007549 4.2e-126 455.3 344 63.7
Ca_04490_v3 Cicer arietinum L. HOM05D006263 ORTHO05D007549 5.4e-126 454.9 342 63.7
Aa31LG11G11400 Aethionema arabicum HOM05D006263 ORTHO05D007549 9.3e-126 454.1 370 61.4
CANSAT78G2484 Cannabis sativa HOM05D006263 ORTHO05D007549 9.3e-126 454.1 341 63.9
RcHm_v2.0_Chr3g0497171 Rosa chinensis HOM05D006263 ORTHO05D007549 1.7e-124 449.9 341 64.2
Eucgr.L01413 Eucalyptus grandis HOM05D006263 ORTHO05D007549 3.9e-124 448.7 343 63.8
CDE02G1162 Ceratophyllum demersum HOM05D006263 ORTHO05D007549 1.1e-123 447.2 343 63.6
Eucgr.K02258 Eucalyptus grandis HOM05D006263 ORTHO05D007549 1.1e-123 447.2 343 63.6
AUR62027102 Chenopodium quinoa HOM05D006263 ORTHO05D007549 1.5e-123 446.8 344 62.8
AUR62012878 Chenopodium quinoa HOM05D006263 ORTHO05D007549 1.9e-123 446.4 343 63.6
PGR042G1093 Punica granatum HOM05D006263 ORTHO05D007549 1.9e-123 446.4 342 63.2
ATR0697G038 Amborella trichopoda HOM05D006263 ORTHO05D007549 9.6e-123 444.1 378 59.5
Peaxi162Scf00076g01055 Petunia axillaris HOM05D006263 ORTHO05D007549 6.2e-122 441.4 336 62.2
arahy.Tifrunner.gnm1.ann1.NGU2DL Arachis hypogaea HOM05D006263 ORTHO05D007549 1.8e-121 439.9 341 62.2
MSTRG.20649 Avicennia marina HOM05D006263 ORTHO05D007549 1.5e-120 436.8 335 61.5
unitig_26.g9717 Utricularia gibba HOM05D006263 ORTHO05D007549 2.9e-119 432.6 337 59.9
Zm00001eb301000 Zea mays HOM05D006263 ORTHO05D007549 1.6e-117 426.8 348 57.8
FAN23G2537 Fragaria x ananassa HOM05D006263 ORTHO05D007549 3.5e-117 425.6 336 62.5
FvH4_1g28080 Fragaria vesca HOM05D006263 ORTHO05D007549 6.0e-117 424.9 336 62.2
FAN19G0970 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.3e-116 423.7 336 61.9
FAN28G0550 Fragaria x ananassa HOM05D006263 ORTHO05D007549 5.1e-116 421.8 336 62.2
FAN26G0246 Fragaria x ananassa HOM05D006263 ORTHO05D007549 5.6e-115 418.3 336 62.2
FAN28G1368 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.1e-113 414.1 336 61.3
SalBow5G0264 Salvia bowleyana HOM05D006263 ORTHO05D007549 4.0e-113 412.1 340 58.2
Sc18g0007080 Simmondsia chinensis HOM05D006263 ORTHO05D007549 6.9e-113 411.4 343 59.8
EL10Ac9g22064 Beta vulgaris HOM05D006263 ORTHO05D007549 9.0e-113 411.0 345 60.0
Cpa.g.sc51.112 Carica papaya HOM05D006263 ORTHO05D007549 9.0e-113 411.0 350 60.6
MBI11_g31289_MAGBIO Magnolia biondii HOM05D006263 ORTHO05D007549 9.9e-112 407.5 345 60.0
Ca_04491_v3 Cicer arietinum L. HOM05D006263 ORTHO05D000429 8.4e-111 404.4 335 57.9
vmacro09144 Vaccinium macrocarpon HOM05D006263 ORTHO05D007549 8.4e-111 404.4 341 60.4
TPR.G34629 Trifolium pratense HOM05D006263 ORTHO05D007549 3.0e-108 396.0 337 56.7
Psat1g096000 Pisum sativum HOM05D006263 ORTHO05D007549 5.1e-108 395.2 335 57.3
Ah.01g007390 Amaranthus hybridus HOM05D006263 ORTHO05D007549 6.7e-108 394.8 437 48.7
Actinidia17306 Actinidia chinensis HOM05D000412 ORTHO05D000429 3.3e-107 392.5 290 67.9
Medtr6g029530 Medicago truncatula HOM05D006263 ORTHO05D007549 3.7e-106 389.0 335 56.7
Oeu003888.1 Olea europaea HOM05D006263 ORTHO05D007549 2.9e-103 379.4 270 67.4
SEGI_37923 Sequoiadendron giganteum HOM05D006263 ORTHO05D007549 1.5e-99 367.1 339 53.7
Sed0020840 Sechium edule HOM05D006263 ORTHO05D007549 1.0e-92 344.4 257 65.0
CsaV3_3G009370 Cucumis sativus L. HOM05D006263 ORTHO05D007549 2.3e-92 343.2 260 64.6
Os07g0171200 Oryza sativa ssp. japonica HOM05D006263 ORTHO05D007549 3.3e-91 339.3 232 67.7
Eucgr.A02096 Eucalyptus grandis HOM05D006263 ORTHO05D007549 1.4e-86 323.9 291 58.1
Hma1.2p1_0376F.1_g139140 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 3.4e-80 302.8 183 76.0
Hma1.2p1_0376F.1_g139150 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 3.4e-80 302.8 183 76.0
Mapoly0103s0062 Marchantia polymorpha HOM05D006263 ORTHO05D007549 2.0e-72 276.9 343 41.1
Pp3c17_20460 Physcomitrium patens HOM05D006263 ORTHO05D007549 2.2e-66 256.9 343 37.6
SMO367G0539 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 1.1e-62 244.6 339 39.5
FAN16G0439 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.1e-54 218.0 209 54.5
RhsimUnG0048700 Rhododendron simsii HOM05D006263 ORTHO05D007549 5.4e-49 199.1 179 57.5
Hma1.2p1_0376F.1_g139120 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 7.8e-48 195.3 172 61.6
Pp3c2_1350 Physcomitrium patens HOM05D006263 ORTHO05D007549 2.4e-41 173.7 261 36.4
FAN18G1683 Fragaria x ananassa HOM05D000349 ORTHO05D007549 9.2e-41 171.8 201 48.3
FAN06G4136 Fragaria x ananassa HOM05D000349 ORTHO05D007549 2.1e-37 160.6 187 47.6
FAN18G1526 Fragaria x ananassa HOM05D000349 ORTHO05D007549 4.9e-34 149.4 178 47.2
FAN24G0044 Fragaria x ananassa HOM05D006263 ORTHO05D007549 8.6e-31 138.7 213 39.4
TPR.G18346 Trifolium pratense HOM05D006263 ORTHO05D007549 4.6e-24 116.3 81 65.4
SMO275G0019 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 1.9e-22 110.9 129 40.3
SMO367G0580 Selaginella moellendorffii HOM05D006263 ORTHO05D378923 4.9e-18 96.3 107 42.1
FAN03G3217 Fragaria x ananassa HOM05D002676 ORTHO05D003194 1.5e-14 84.7 62 64.5
FAN11G1140 Fragaria x ananassa HOM05D002676 ORTHO05D003194 1.5e-14 84.7 62 64.5
FAN22G0360 Fragaria x ananassa HOM05D002676 ORTHO05D003194 1.5e-14 84.7 62 64.5
FAN22G1437 Fragaria x ananassa HOM05D002676 ORTHO05D007549 1.2e-13 81.6 62 62.9
FAN15G0659 Fragaria x ananassa HOM05D006263 ORTHO05D007549 9.0e-12 75.5 92 45.7
Phvul.004G082000 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 2.2e-10 70.9 59 52.5
FAN08G1181 Fragaria x ananassa HOM05D003914 ORTHO05D001189 3.8e-10 70.1 55 60.0
FAN22G0951 Fragaria x ananassa HOM05D000005 ORTHO05D000294 3.8e-10 70.1 81 46.9
FAN27G3525 Fragaria x ananassa HOM05D003914 ORTHO05D001189 3.8e-10 70.1 55 60.0
FAN25G1138 Fragaria x ananassa HOM05D012843 ORTHO05D017973 1.9e-09 67.8 81 45.7
FAN12G3135 Fragaria x ananassa HOM05D000005 ORTHO05D000294 7.1e-09 65.9 81 44.4
FAN09G2057 Fragaria x ananassa HOM05D000005 ORTHO05D000294 8.7e-07 58.9 59 50.8
FAN22G2156 Fragaria x ananassa HOM05D002676 ORTHO05D003194 4.3e-06 56.6 71 43.7


User provided reference genes

Program Settings