Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 1.6e-258 895.6 457 100.0
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 3.9e-212 741.5 451 83.4
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 9.6e-211 736.9 451 81.2
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 8.9e-209 730.3 451 81.6
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 1.1e-203 713.4 451 78.3
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 1.5e-200 703.0 456 76.3
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 1.7e-199 699.5 455 75.2
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 1.1e-198 696.8 458 76.0
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 9.3e-198 693.7 460 75.9
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 9.3e-198 693.7 460 75.9
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 1.9e-195 686.0 450 76.7
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 3.3e-195 685.3 450 77.8
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 1.8e-193 679.5 470 72.6
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 4.0e-193 678.3 418 83.3
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.2e-192 676.8 451 74.5
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 1.9e-190 669.5 450 73.6
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 7.1e-190 667.5 456 73.0
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 6.0e-189 664.5 448 73.0
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 2.3e-188 662.5 431 76.8
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 2.8e-186 655.6 450 72.7
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 2.8e-186 655.6 450 72.7
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.1e-185 653.7 450 72.2
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 1.5e-184 649.8 448 73.4
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 5.8e-184 647.9 448 72.1
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 1.0e-183 647.1 448 73.0
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.2e-183 646.0 448 71.7
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 4.9e-183 644.8 450 71.1
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 6.5e-183 644.4 448 72.8
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 1.4e-182 643.3 456 71.7
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.4e-182 643.3 456 69.7
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 1.9e-182 642.9 456 69.5
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 2.5e-182 642.5 458 71.4
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 4.2e-182 641.7 473 68.7
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 7.1e-182 641.0 448 71.4
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 3.5e-181 638.6 450 71.1
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 3.5e-181 638.6 462 69.3
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 4.6e-181 638.3 452 72.3
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 4.6e-181 638.3 453 71.1
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 6.0e-181 637.9 428 71.7
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 6.0e-181 637.9 461 68.3
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.3e-180 636.0 448 71.0
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 1.5e-179 633.3 477 67.5
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 1.9e-179 632.9 428 70.6
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 1.9e-179 632.9 449 70.6
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 4.3e-179 631.7 477 67.5
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 9.6e-179 630.6 453 69.8
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.3e-178 630.2 444 70.5
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 1.6e-178 629.8 448 69.4
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 4.8e-178 628.2 449 69.3
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 6.3e-178 627.9 449 68.4
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 8.2e-178 627.5 442 67.6
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 2.4e-177 625.9 448 69.4
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 9.0e-177 624.0 454 68.7
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 9.0e-177 624.0 448 69.0
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 1.2e-176 623.6 448 69.0
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 3.4e-176 622.1 448 69.0
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 1.7e-175 619.8 453 69.1
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 2.2e-175 619.4 453 69.1
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 2.5e-174 615.9 450 68.7
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 4.2e-174 615.1 448 67.4
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 9.3e-174 614.0 456 66.7
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 9.3e-174 614.0 548 59.5
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 9.3e-174 614.0 456 67.1
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 3.6e-173 612.1 448 69.2
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 4.6e-173 611.7 458 66.6
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 4.6e-173 611.7 451 67.8
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 7.9e-173 610.9 467 66.8
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.3e-172 610.1 455 66.4
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 1.8e-172 609.8 451 67.6
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 3.9e-172 608.6 451 67.2
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 5.1e-172 608.2 457 66.5
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 5.1e-172 608.2 451 67.2
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 5.1e-172 608.2 451 67.2
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 6.7e-172 607.8 458 67.0
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.1e-171 607.1 449 66.8
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.5e-171 606.7 448 67.2
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 2.5e-171 605.9 457 66.1
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 5.7e-171 604.7 458 65.9
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 5.7e-171 604.7 458 65.9
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 7.4e-171 604.4 455 65.7
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 9.7e-171 604.0 451 67.2
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 9.7e-171 604.0 461 67.0
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 9.7e-171 604.0 449 67.0
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 1.3e-170 603.6 459 66.0
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.6e-170 603.2 448 66.5
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 2.8e-170 602.4 460 65.7
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 2.8e-170 602.4 461 65.9
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 3.7e-170 602.1 449 66.4
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 6.3e-170 601.3 458 65.3
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 8.2e-170 600.9 451 67.2
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 1.1e-169 600.5 398 73.9
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 1.4e-169 600.1 401 72.1
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 1.8e-169 599.7 466 64.2
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 3.1e-169 599.0 393 73.8
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 3.1e-169 599.0 453 67.8
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 4.1e-169 598.6 461 65.3
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 5.3e-169 598.2 449 66.4
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 6.9e-169 597.8 480 64.0
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 2.0e-168 596.3 458 65.3
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 7.7e-168 594.3 453 66.2
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 1.7e-167 593.2 474 64.8
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 3.8e-167 592.0 495 63.2
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 1.4e-166 590.1 488 62.7
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 2.5e-166 589.3 447 67.1
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 4.6e-165 585.1 397 72.3
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 5.1e-164 581.6 476 62.6
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 6.7e-164 581.3 482 63.1
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 3.4e-160 568.9 396 71.5
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.0e-159 567.4 453 64.5
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 5.0e-159 565.1 447 61.3
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 5.7e-155 551.6 430 62.6
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.3e-151 540.4 404 66.3
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 1.5e-147 526.9 450 59.6
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 3.7e-146 522.3 383 67.4
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 4.1e-145 518.8 444 59.0
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 3.5e-144 515.8 444 58.3
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 9.4e-142 507.7 447 57.9
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 7.0e-137 491.5 444 56.5
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.0e-135 487.6 349 71.3
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 1.2e-131 474.2 443 52.8
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 5.4e-129 465.3 450 53.1
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 5.9e-128 461.8 282 78.4
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 5.6e-126 455.3 453 55.6
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 7.3e-126 454.9 389 57.1
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 1.3e-122 444.1 450 49.8
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 6.4e-122 441.8 450 49.6
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 3.2e-121 439.5 450 50.4
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.2e-120 437.6 439 56.3
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 3.3e-110 402.9 318 66.4
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.8e-108 397.1 444 49.8
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 5.1e-103 379.0 252 71.8
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 6.6e-103 378.6 386 53.4
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 9.9e-99 364.8 269 70.6
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 3.4e-91 339.7 290 59.7
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.9e-82 310.1 449 40.1
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 5.3e-76 289.3 188 74.5
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 6.0e-72 275.8 311 51.8
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 9.7e-62 241.9 455 36.7
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.6e-61 241.1 158 74.7
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 3.8e-58 229.9 140 77.9
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.9e-54 217.6 153 71.2
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.9e-54 217.6 194 58.8
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 2.6e-51 207.2 173 62.4
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 5.3e-44 183.0 121 73.6
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 1.0e-42 178.7 157 59.9
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 5.3e-36 156.4 118 66.9
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 7.7e-35 152.5 135 60.7
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.5e-33 148.3 94 73.4
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 1.7e-26 124.8 118 57.6
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 6.5e-26 122.9 77 75.3
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 3.0e-23 114.0 99 50.5
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 2.3e-18 97.8 72 65.3
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 1.8e-15 88.2 62 71.0
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 3.0e-15 87.4 60 70.0
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 7.5e-14 82.8 44 81.8
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 2.1e-08 64.7 46 63.0
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.8e-08 64.3 43 67.4
Nitab4.5_0000468g0200 Nicotiana tabacum HOM05D004544 ORTHO05D283929 1.2e-06 58.9 183 29.0
FvH4_5g06577 Fragaria vesca HOM05D000025 ORTHO05D000040 2.6e-06 57.8 37 78.4


User provided reference genes

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