Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 0.0e+00 1971.1 1000 100.0
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 0.0e+00 1083.6 1015 57.1
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 2.2e-292 1009.2 1009 52.4
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 6.2e-287 991.1 1097 49.1
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 2.0e-285 986.1 1090 49.4
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 1.1e-270 937.2 994 50.4
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 2.0e-269 932.9 994 50.3
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 2.9e-268 929.1 994 49.9
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 5.1e-265 918.3 988 50.2
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 7.3e-264 914.4 992 50.7
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 1.1e-262 910.6 998 49.3
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 1.8e-262 909.8 1001 50.0
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 5.8e-261 904.8 971 49.7
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 9.9e-261 904.0 998 48.8
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 1.1e-259 900.6 957 50.7
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 1.9e-259 899.8 973 48.9
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 1.5e-256 890.2 995 48.4
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 3.6e-255 885.6 994 47.3
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 1.8e-254 883.2 999 48.6
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 3.4e-253 879.0 1000 48.6
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 4.5e-253 878.6 1221 43.2
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 2.2e-252 876.3 977 47.8
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 4.3e-248 862.1 966 47.6
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 5.6e-248 861.7 949 48.5
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 4.8e-247 858.6 966 47.3
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 2.4e-238 829.7 995 45.5
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 4.9e-236 822.0 996 47.6
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 2.0e-229 800.0 1006 44.5
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 1.7e-228 797.0 1003 43.7
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 9.3e-227 791.2 1005 43.6
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 3.3e-224 782.7 1012 43.1
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 6.3e-223 778.5 989 44.0
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 5.9e-205 718.8 973 42.3
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 1.7e-204 717.2 985 42.7
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 3.3e-200 703.0 986 40.7
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 8.5e-196 688.3 804 46.6
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 4.2e-195 686.0 548 64.1
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 3.0e-193 679.9 1310 34.7
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 8.6e-180 635.2 604 54.3
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 4.6e-173 612.8 550 57.3
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 1.0e-172 611.7 545 57.1
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 9.5e-171 605.1 453 64.5
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 1.6e-170 604.4 453 62.9
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 3.6e-170 603.2 481 62.0
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 6.2e-170 602.4 530 57.9
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 2.6e-168 597.0 465 61.1
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 4.9e-167 592.8 480 60.4
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 8.3e-167 592.0 488 58.6
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 4.1e-166 589.7 1069 35.4
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 2.7e-165 587.0 451 62.3
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 3.9e-164 583.2 449 62.1
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 1.6e-162 577.8 490 57.8
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 1.1e-161 575.1 443 61.9
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 3.1e-161 573.5 490 56.3
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 5.2e-161 572.8 459 59.9
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 1.2e-160 571.6 490 56.5
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 2.6e-160 570.5 453 59.4
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 5.8e-160 569.3 454 59.5
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 5.8e-160 569.3 464 59.3
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 9.9e-160 568.5 1082 34.3
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 4.1e-158 563.1 461 60.1
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 9.2e-158 562.0 485 58.1
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 2.3e-156 557.4 451 60.3
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 5.6e-155 552.7 453 58.3
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 1.2e-154 551.6 450 58.2
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 8.1e-154 548.9 457 56.9
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 1.4e-153 548.1 457 57.1
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 1.4e-153 548.1 453 59.6
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 3.4e-152 543.5 384 65.6
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 7.6e-152 542.3 1142 33.5
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 1.3e-151 541.6 466 55.6
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 3.8e-151 540.0 1046 34.0
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 7.1e-150 535.8 453 58.3
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 7.1e-150 535.8 454 58.6
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 8.7e-148 528.9 444 58.8
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 2.6e-144 517.3 454 55.7
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 2.9e-143 513.8 454 54.2
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 1.9e-142 511.1 786 40.3
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 2.8e-138 497.3 461 54.0
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 9.9e-136 488.8 486 49.8
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 1.7e-135 488.0 498 52.0
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 5.4e-134 483.0 486 50.2
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 3.0e-132 477.2 371 62.0
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 3.0e-132 477.2 733 40.1
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 1.6e-130 471.5 456 49.8
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 1.6e-130 471.5 352 62.5
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 8.1e-130 469.2 457 50.3
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 1.1e-129 468.8 432 52.5
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 2.4e-129 467.6 432 52.3
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 1.5e-128 464.9 458 50.9
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 4.5e-128 463.4 490 47.6
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 5.8e-128 463.0 454 50.7
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 1.3e-127 461.8 432 51.9
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 6.4e-127 459.5 432 51.6
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 1.2e-125 455.3 512 46.5
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 2.1e-125 454.5 344 62.2
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 1.1e-123 448.7 469 50.3
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 1.4e-121 441.8 356 59.8
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 4.0e-121 440.3 349 62.5
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 3.5e-117 427.2 469 46.3
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 2.8e-114 417.5 363 59.2
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 1.3e-111 408.7 492 45.7
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 5.0e-111 406.8 716 36.0
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 1.6e-109 401.7 361 54.8
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 9.7e-107 392.5 460 45.0
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 9.7e-107 392.5 460 45.0
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 4.4e-99 367.1 419 43.2
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 4.2e-94 350.5 456 43.9
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 4.8e-90 337.0 366 48.6
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 4.0e-84 317.4 980 26.6
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 2.2e-79 301.6 639 33.8
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 6.1e-77 293.5 257 56.8
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 1.2e-75 289.3 321 45.5
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 8.0e-69 266.5 286 48.6
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 3.1e-60 238.0 168 63.7
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 4.6e-56 224.2 179 58.7
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 2.5e-54 218.4 196 56.6
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 4.3e-54 217.6 181 60.2
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 2.8e-53 214.9 460 32.4
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 1.8e-52 212.2 211 47.9
TAR628G0523 Trochodendron aralioides HOM05D002030 ORTHO05D007413 1.1e-38 166.4 234 43.2
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 7.3e-38 163.7 117 63.2
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 3.1e-28 131.7 145 46.9
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 1.2e-24 119.8 329 29.2
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 9.9e-19 100.1 62 64.5
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 3.3e-14 85.1 164 36.6
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 1.2e-11 76.6 80 47.5
vmacro05339 Vaccinium macrocarpon HOM05D002030 ORTHO05D007413 5.1e-07 61.2 128 35.2
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 8.7e-07 60.5 42 52.4


User provided reference genes

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