Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 1.7e-109 399.8 274 100.0
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 4.6e-43 179.1 284 66.5
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 7.4e-41 171.8 287 62.4
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 9.6e-41 171.4 287 60.3
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 2.1e-40 170.2 284 65.1
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 2.1e-40 170.2 274 66.1
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 6.2e-40 168.7 300 63.0
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.1e-39 167.9 300 62.7
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.1e-39 167.9 277 64.6
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 1.8e-39 167.2 287 61.0
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 3.1e-39 166.4 283 63.3
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 4.0e-39 166.0 287 61.0
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 9.0e-39 164.9 298 61.7
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 1.2e-38 164.5 296 62.5
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.4e-38 162.9 300 62.3
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 5.8e-38 162.2 265 64.2
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 1.3e-37 161.0 292 60.6
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 3.8e-37 159.5 298 61.4
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.8e-37 159.5 298 61.4
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 2.4e-36 156.8 284 62.3
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 7.1e-36 155.2 301 58.1
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.2e-35 154.5 281 52.0
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 2.7e-35 153.3 280 63.6
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 6.0e-35 152.1 288 59.7
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 3.0e-34 149.8 252 67.5
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 5.1e-34 149.1 276 61.6
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 5.1e-34 149.1 280 61.8
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 8.7e-34 148.3 267 64.4
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 1.1e-33 147.9 271 63.8
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 1.9e-33 147.1 290 59.0
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 1.9e-33 147.1 192 52.6
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 1.9e-33 147.1 286 52.1
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 7.4e-33 145.2 292 58.9
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 9.6e-33 144.8 295 61.0
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 1.3e-32 144.4 275 46.2
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 1.3e-32 144.4 278 61.9
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 1.6e-32 144.1 277 59.9
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 1.6e-32 144.1 262 59.2
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 2.8e-32 143.3 312 56.1
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 6.2e-32 142.1 291 58.4
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 6.2e-32 142.1 205 51.2
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 6.2e-32 142.1 263 62.4
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 8.2e-32 141.7 293 58.0
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 8.2e-32 141.7 263 62.0
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 4.0e-31 139.4 279 61.6
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 5.3e-31 139.0 268 61.9
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 6.9e-31 138.7 196 52.0
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.2e-30 137.9 265 61.9
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 1.5e-30 137.5 291 57.0
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 2.6e-30 136.7 287 56.1
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 3.4e-30 136.3 300 57.7
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 3.4e-30 136.3 277 60.3
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 3.4e-30 136.3 287 58.2
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 5.8e-30 135.6 276 60.1
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 5.8e-30 135.6 198 50.5
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 1.3e-29 134.4 288 57.3
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 2.2e-29 133.7 268 61.6
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 2.2e-29 133.7 268 61.6
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 2.2e-29 133.7 201 51.2
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 2.2e-29 133.7 273 59.0
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.9e-29 133.3 293 58.7
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.9e-29 133.3 278 59.7
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 6.5e-29 132.1 263 61.6
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 3.2e-28 129.8 266 61.7
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 5.5e-28 129.0 279 59.9
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 7.1e-28 128.6 301 56.1
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 7.1e-28 128.6 270 58.1
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 7.1e-28 128.6 288 52.8
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 1.6e-27 127.5 268 62.3
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 2.1e-27 127.1 284 58.1
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.1e-27 127.1 282 56.0
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 2.7e-27 126.7 290 58.6
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 2.7e-27 126.7 274 58.8
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 3.5e-27 126.3 264 61.4
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 4.6e-27 125.9 187 52.4
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.3e-26 124.4 261 60.9
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 1.8e-26 124.0 278 57.2
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 3.0e-26 123.2 259 61.8
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 3.0e-26 123.2 285 55.8
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 5.1e-26 122.5 212 46.2
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 6.7e-26 122.1 226 42.9
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 8.7e-26 121.7 267 59.2
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.9e-25 120.6 280 56.1
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 2.5e-25 120.2 214 44.4
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 3.3e-25 119.8 275 58.5
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 4.3e-25 119.4 271 56.1
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 9.7e-25 118.2 263 47.5
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 9.7e-25 118.2 181 49.7
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.3e-24 117.9 269 56.5
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 1.6e-24 117.5 278 57.2
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 3.7e-24 116.3 262 53.8
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 3.7e-24 116.3 260 36.9
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 3.7e-24 116.3 264 56.4
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 3.7e-24 116.3 291 54.0
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 4.8e-24 115.9 258 57.8
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 8.2e-24 115.2 273 58.6
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 1.4e-23 114.4 313 53.0
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.4e-23 114.4 291 55.0
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 1.8e-23 114.0 305 53.1
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 2.4e-23 113.6 278 56.8
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 3.1e-23 113.2 289 52.9
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 5.3e-23 112.5 174 48.3
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 6.9e-23 112.1 274 44.5
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 9.0e-23 111.7 294 54.4
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.2e-22 111.3 272 54.4
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 1.5e-22 110.9 280 54.3
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 2.6e-22 110.2 273 55.3
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 2.6e-22 110.2 285 55.4
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 3.4e-22 109.8 185 43.8
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 4.5e-22 109.4 208 43.3
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 1.0e-21 108.2 258 45.7
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.3e-21 107.8 301 51.8
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 2.2e-21 107.1 226 62.4
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 2.2e-21 107.1 303 52.1
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 3.8e-21 106.3 284 54.9
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 5.0e-21 105.9 295 54.2
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 8.5e-21 105.1 281 53.7
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.1e-20 104.8 267 55.8
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.1e-20 104.8 279 51.6
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 1.9e-20 104.0 257 54.5
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 3.2e-20 103.2 282 55.0
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 1.6e-19 100.9 280 52.9
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 2.7e-19 100.1 284 52.5
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 2.7e-19 100.1 284 52.1
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 2.7e-19 100.1 274 54.0
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 3.6e-19 99.8 276 52.2
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 3.6e-19 99.8 276 52.2
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 3.6e-19 99.8 276 52.2
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 3.6e-19 99.8 306 36.3
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 4.6e-19 99.4 257 52.9
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 4.6e-19 99.4 257 44.7
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 4.6e-19 99.4 257 44.7
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 4.6e-19 99.4 257 52.9
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 6.1e-19 99.0 287 53.0
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 7.9e-19 98.6 271 52.0
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 1.4e-18 97.8 259 55.6
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 1.4e-18 97.8 181 44.2
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 3.0e-18 96.7 266 52.6
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 3.0e-18 96.7 280 51.1
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 3.9e-18 96.3 261 56.3
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 3.9e-18 96.3 259 57.1
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 5.1e-18 95.9 271 52.8
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 1.1e-17 94.7 250 56.8
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 1.9e-17 94.0 198 43.4
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 7.4e-17 92.0 277 53.8
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 1.7e-16 90.9 284 39.8
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.7e-16 90.9 284 48.9
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 1.8e-15 87.4 286 50.7
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 3.1e-15 86.7 132 49.2
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 3.1e-15 86.7 275 51.6
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.5e-14 84.3 286 49.0
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 2.6e-14 83.6 154 42.2
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 1.3e-13 81.3 135 45.9
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 3.8e-13 79.7 303 47.5
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 9.4e-12 75.1 165 67.3
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 4.7e-11 72.8 268 33.6
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 3.0e-10 70.1 226 38.5
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 3.0e-10 70.1 253 33.2
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 2.6e-09 67.0 119 47.1
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 4.4e-09 66.2 269 45.0
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 2.2e-08 63.9 272 47.8
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 3.7e-08 63.2 281 35.6


User provided reference genes

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