Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 9.5e-217 756.5 371 100.0
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 2.8e-192 675.2 395 85.6
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 4.6e-171 604.7 355 80.6
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 1.3e-168 596.7 360 78.9
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 8.1e-168 594.0 350 79.7
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 1.4e-167 593.2 360 77.8
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 1.8e-167 592.8 360 77.8
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 3.1e-167 592.0 376 76.6
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 3.1e-167 592.0 358 79.9
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 1.3e-165 586.6 357 77.6
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 2.4e-164 582.4 361 77.3
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 2.4e-164 582.4 364 76.4
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 4.2e-164 581.6 345 79.7
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 7.1e-164 580.9 351 78.9
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 9.3e-164 580.5 357 77.9
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 9.3e-164 580.5 357 77.9
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 9.3e-164 580.5 355 76.9
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 1.6e-163 579.7 358 76.8
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 2.7e-163 578.9 355 77.7
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 2.7e-163 578.9 389 73.3
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 3.5e-163 578.6 365 76.2
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 7.9e-163 577.4 345 77.1
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 1.0e-162 577.0 395 70.6
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 1.3e-162 576.6 365 75.9
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 1.3e-162 576.6 365 75.9
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 1.8e-162 576.2 355 78.0
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 1.8e-162 576.2 356 76.7
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 1.8e-162 576.2 362 75.4
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 2.3e-162 575.9 362 75.7
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 2.3e-162 575.9 357 75.4
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 2.3e-162 575.9 355 76.1
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 2.3e-162 575.9 355 77.7
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 3.0e-162 575.5 361 76.7
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 3.0e-162 575.5 353 77.9
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 3.0e-162 575.5 356 77.0
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 3.0e-162 575.5 345 78.3
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 5.1e-162 574.7 330 80.3
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 5.1e-162 574.7 361 76.5
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 6.7e-162 574.3 362 76.0
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 6.7e-162 574.3 343 78.7
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 6.7e-162 574.3 360 76.7
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.1e-161 573.5 363 75.8
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 1.1e-161 573.5 391 71.1
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 1.5e-161 573.2 363 75.8
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 2.5e-161 572.4 360 76.1
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 2.5e-161 572.4 363 75.5
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 4.3e-161 571.6 403 70.0
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 4.3e-161 571.6 338 79.6
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 5.6e-161 571.2 362 75.4
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 7.4e-161 570.9 344 78.5
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 7.4e-161 570.9 364 74.5
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 2.1e-160 569.3 381 71.7
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 3.7e-160 568.5 360 75.0
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 6.2e-160 567.8 350 75.7
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 8.1e-160 567.4 364 74.2
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-159 566.6 365 74.0
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 2.4e-159 565.8 377 72.9
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 2.4e-159 565.8 357 75.6
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 5.3e-159 564.7 384 71.1
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 9.0e-159 563.9 378 72.8
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 1.2e-158 563.5 362 74.0
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 4.5e-158 561.6 371 73.0
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 5.8e-158 561.2 335 78.8
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 7.6e-158 560.8 376 73.4
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 1.0e-157 560.5 350 76.3
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 1.7e-157 559.7 352 75.6
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 2.2e-157 559.3 339 77.6
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 2.9e-157 558.9 390 70.5
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 3.8e-157 558.5 362 75.1
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 3.8e-157 558.5 361 75.3
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 4.9e-157 558.1 345 76.5
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 6.5e-157 557.8 340 76.8
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 8.4e-157 557.4 345 78.0
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 2.5e-156 555.8 334 77.5
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 3.2e-156 555.4 365 72.9
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 4.2e-156 555.1 340 76.8
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 1.8e-154 549.7 348 74.4
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 8.7e-154 547.4 350 74.9
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 1.5e-153 546.6 334 76.0
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 4.3e-153 545.0 367 71.7
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 4.3e-153 545.0 357 72.8
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 4.3e-153 545.0 332 74.7
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 1.3e-152 543.5 348 73.9
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 2.1e-152 542.7 348 74.1
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 4.8e-152 541.6 353 73.4
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 4.8e-152 541.6 365 72.3
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 4.8e-152 541.6 356 71.1
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 6.3e-152 541.2 360 74.2
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 8.2e-152 540.8 324 78.7
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 2.4e-151 539.3 350 74.0
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 2.4e-151 539.3 353 72.8
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 4.1e-151 538.5 356 73.6
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 5.3e-151 538.1 348 73.3
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 6.9e-151 537.7 360 72.2
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 6.9e-151 537.7 342 72.8
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 1.2e-150 537.0 353 72.8
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 2.0e-150 536.2 371 70.4
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 2.9e-149 532.3 361 70.4
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 3.8e-149 531.9 366 71.6
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 7.2e-148 527.7 356 69.1
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 1.2e-147 526.9 296 82.8
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 2.7e-147 525.8 313 78.6
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 4.6e-147 525.0 357 72.0
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 4.6e-147 525.0 357 72.0
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 5.1e-146 521.5 323 75.9
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 1.1e-145 520.4 357 71.4
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 1.3e-144 516.9 346 72.0
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 8.2e-144 514.2 336 72.3
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 9.0e-143 510.8 379 68.3
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 2.0e-142 509.6 283 84.1
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 6.5e-141 504.6 330 71.2
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 2.5e-140 502.7 332 72.0
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 9.4e-140 500.7 296 77.0
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 1.6e-139 500.0 353 69.1
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 4.6e-139 498.4 309 75.4
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 4.6e-139 498.4 309 75.4
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 1.8e-138 496.5 357 68.1
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 5.7e-137 491.5 310 74.8
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 2.8e-136 489.2 333 68.8
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 1.2e-134 483.8 330 67.9
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 4.7e-131 471.9 277 78.3
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 1.0e-130 470.7 367 65.1
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 1.3e-128 463.8 334 65.6
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 1.7e-128 463.4 339 64.9
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 2.2e-125 453.0 278 78.1
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 3.2e-124 449.1 341 65.1
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 3.0e-122 442.6 421 58.2
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 2.6e-113 412.9 343 57.1
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 9.1e-111 404.4 261 74.7
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 9.1e-111 404.4 333 59.2
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 5.5e-108 395.2 321 58.6
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.2e-104 383.3 300 66.0
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 1.7e-101 373.6 295 59.3
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 5.9e-94 348.6 274 64.2
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.7e-85 320.5 188 80.9
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 1.9e-84 317.0 302 55.3
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 2.6e-81 306.6 201 76.1
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 9.2e-79 298.1 210 71.0
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 4.0e-74 282.7 158 81.6
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 5.4e-71 272.3 161 75.2
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 3.0e-69 266.5 275 52.0
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 1.4e-63 247.7 143 75.5
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 5.1e-61 239.2 317 43.5
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 2.7e-54 216.9 235 51.5
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.2e-49 201.4 243 49.0
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 5.1e-45 186.0 119 72.3
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 8.7e-45 185.3 307 38.8
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 9.6e-44 181.8 130 66.2
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.6e-43 181.0 138 65.2
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 1.7e-40 171.0 138 63.8
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 1.7e-40 171.0 138 63.8
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 3.2e-39 166.8 122 68.9
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.6e-30 136.7 159 49.7
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.6e-30 136.7 159 49.7
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 8.7e-29 132.1 235 37.4
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 1.7e-19 101.3 168 37.5
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 9.1e-18 95.5 53 71.7
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 9.1e-18 95.5 53 71.7
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 2.0e-12 77.8 54 68.5
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 3.2e-07 60.5 47 55.3


User provided reference genes

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