Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy116s005 Aquilegia oxysepala HOM05D001411 ORTHO05D003375 1.8e-54 215.7 109 100.0
Aqoxy1G00987 Aquilegia oxysepala HOM05D001411 ORTHO05D003375 2.1e-31 139.0 74 91.9
TAR633G2175 Trochodendron aralioides HOM05D001411 ORTHO05D003375 1.3e-20 103.2 76 68.4
Atru.chr8.1670 Acer truncatum HOM05D001411 ORTHO05D003375 1.7e-20 102.8 64 71.9
Thecc.05G078500 Theobroma cacao HOM05D001411 ORTHO05D003375 2.8e-20 102.1 64 71.9
Duzib128G0532 Durio zibethinus HOM05D001411 ORTHO05D003375 3.7e-20 101.7 64 68.8
Gohir.A09G142500 Gossypium hirsutum HOM05D001411 ORTHO05D003375 3.7e-20 101.7 64 70.3
Gohir.D09G138600 Gossypium hirsutum HOM05D001411 ORTHO05D003375 3.7e-20 101.7 64 70.3
Gorai.006G159000 Gossypium raimondii HOM05D001411 ORTHO05D003375 3.7e-20 101.7 64 70.3
Aqoxy300s001 Aquilegia oxysepala HOM05D001411 ORTHO05D003375 8.3e-20 100.5 64 68.8
PSO339G2417 Papaver somniferum HOM05D001411 ORTHO05D003375 8.3e-20 100.5 64 71.9
COL.COLO4_22286 Corchorus olitorius HOM05D001411 ORTHO05D003375 1.4e-19 99.8 65 67.7
MBI17_g12065_MAGBIO Magnolia biondii HOM05D001411 ORTHO05D003375 1.4e-19 99.8 65 70.8
PSO801G0203 Papaver somniferum HOM05D001411 ORTHO05D003375 1.8e-19 99.4 64 70.3
CANSAT80G0978 Cannabis sativa HOM05D001411 ORTHO05D003375 3.1e-19 98.6 65 66.2
MD14G1094300 Malus domestica HOM05D001411 ORTHO05D003375 3.1e-19 98.6 65 69.2
Prupe.7G120800 Prunus persica HOM05D001411 ORTHO05D003375 5.4e-19 97.8 65 69.2
CiPaw.10G003900 Carya illinoinensis HOM05D001411 ORTHO05D003375 1.2e-18 96.7 65 67.7
QL07p040934 Quercus lobata HOM05D001411 ORTHO05D003375 1.2e-18 96.7 65 66.2
GSVIVG01033746001 Vitis vinifera HOM05D001411 ORTHO05D003375 1.2e-18 96.7 64 71.9
Oeu038884.1 Olea europaea HOM05D001411 ORTHO05D003375 1.6e-18 96.3 81 58.0
Haze_19511 Corylus avellana HOM05D001411 ORTHO05D003375 2.0e-18 95.9 65 70.8
Duzib093G1958 Durio zibethinus HOM05D001411 ORTHO05D003375 2.7e-18 95.5 64 65.6
Ciclev10013486m.g Citrus clementina HOM05D001411 ORTHO05D003375 4.5e-18 94.7 64 62.5
Cpa.g.sc5.104 Carica papaya HOM05D001411 ORTHO05D003375 5.9e-18 94.4 64 65.6
ClCG10G019510 Citrullus lanatus HOM05D001411 ORTHO05D003375 7.8e-18 94.0 61 68.9
Duzib106G0290 Durio zibethinus HOM05D001411 ORTHO05D003375 7.8e-18 94.0 64 67.2
Lj5g0014548 Lotus japonicus HOM05D001411 ORTHO05D003375 7.8e-18 94.0 64 68.8
Manes.09G061200 Manihot esculenta HOM05D001411 ORTHO05D003375 7.8e-18 94.0 82 54.9
FvH4_6g17470 Fragaria vesca HOM05D001411 ORTHO05D003375 1.0e-17 93.6 81 56.8
FAN14G3650 Fragaria x ananassa HOM05D001411 ORTHO05D003375 1.0e-17 93.6 81 56.8
Cfa016509 Carpinus fangiana HOM05D001411 ORTHO05D003375 1.3e-17 93.2 78 59.0
MSTRG.19216 Avicennia marina HOM05D001411 ORTHO05D003375 1.7e-17 92.8 74 56.8
Oeu023842.1 Olea europaea HOM05D001411 ORTHO05D003375 1.7e-17 92.8 74 60.8
RcHm_v2.0_Chr3g0471711 Rosa chinensis HOM05D001411 ORTHO05D003375 1.7e-17 92.8 62 64.5
CiPaw.09G007000 Carya illinoinensis HOM05D001411 ORTHO05D003375 2.9e-17 92.0 65 66.2
MELO3C009422.2 Cucumis melo HOM05D001411 ORTHO05D003375 2.9e-17 92.0 61 67.2
Glyma.19G190000 Glycine max HOM05D001411 ORTHO05D003375 2.9e-17 92.0 65 67.7
Sabra16G0100700 Salix brachista HOM05D001411 ORTHO05D003375 6.6e-17 90.9 76 59.2
CsaV3_3G036680 Cucumis sativus L. HOM05D001411 ORTHO05D003375 8.6e-17 90.5 61 65.6
FAN09G1812 Fragaria x ananassa HOM05D001411 ORTHO05D003375 8.6e-17 90.5 103 44.7
Lj2P126T14 Lonicera japonica HOM05D001411 ORTHO05D003375 8.6e-17 90.5 73 58.9
Potri.016G096300 Populus trichocarpa HOM05D001411 ORTHO05D003375 8.6e-17 90.5 82 54.9
Eucgr.A01572 Eucalyptus grandis HOM05D001411 ORTHO05D003375 1.5e-16 89.7 75 57.3
Gohir.A01G210600 Gossypium hirsutum HOM05D001411 ORTHO05D003375 1.5e-16 89.7 64 62.5
Manes.08G018600 Manihot esculenta HOM05D001411 ORTHO05D003375 1.9e-16 89.4 76 59.2
Rhsim04G0136700 Rhododendron simsii HOM05D001411 ORTHO05D003375 1.9e-16 89.4 64 65.6
FAN05G1490 Fragaria x ananassa HOM05D001411 ORTHO05D003375 2.5e-16 89.0 103 43.7
FAN05G3564 Fragaria x ananassa HOM05D001411 ORTHO05D003375 2.5e-16 89.0 103 43.7
Potri.006G117500 Populus trichocarpa HOM05D001411 ORTHO05D003375 2.5e-16 89.0 76 56.6
arahy.Tifrunner.gnm1.ann1.5MEL2D Arachis hypogaea HOM05D001411 ORTHO05D003375 4.3e-16 88.2 62 62.9
arahy.Tifrunner.gnm1.ann1.E570TZ Arachis hypogaea HOM05D001411 ORTHO05D003375 4.3e-16 88.2 62 62.9
Lj1g0015637 Lotus japonicus HOM05D001411 ORTHO05D003375 4.3e-16 88.2 64 64.1
MD12G1096800 Malus domestica HOM05D001411 ORTHO05D003375 4.3e-16 88.2 65 60.0
MSTRG.26659 Avicennia marina HOM05D001411 ORTHO05D003375 9.5e-16 87.0 74 54.1
FAN02G4281 Fragaria x ananassa HOM05D001411 ORTHO05D003375 1.2e-15 86.7 103 42.7
Phvul.007G224600 Phaseolus vulgaris HOM05D001411 ORTHO05D003375 1.2e-15 86.7 70 60.0
Gohir.D01G199500 Gossypium hirsutum HOM05D001411 ORTHO05D003375 2.1e-15 85.9 64 59.4
Gorai.002G243900 Gossypium raimondii HOM05D001411 ORTHO05D003375 2.1e-15 85.9 64 59.4
vmacro08811 Vaccinium macrocarpon HOM05D001411 ORTHO05D003375 2.1e-15 85.9 64 64.1
Cc00_g31390 Coffea canephora HOM05D001411 ORTHO05D003375 2.8e-15 85.5 74 56.8
Ca_08954_v3 Cicer arietinum L. HOM05D001411 ORTHO05D003375 3.6e-15 85.1 72 55.6
Ca_29664_v3 Cicer arietinum L. HOM05D001411 ORTHO05D003375 3.6e-15 85.1 72 55.6
Glyma.13G149700 Glycine max HOM05D001411 ORTHO05D003375 3.6e-15 85.1 65 61.5
CAN.G824.47 Capsicum annuum HOM05D001411 ORTHO05D003375 4.7e-15 84.7 74 55.4
TPR.G31010 Trifolium pratense HOM05D001411 ORTHO05D003375 4.7e-15 84.7 72 52.8
CDE08G1541 Ceratophyllum demersum HOM05D001411 ORTHO05D003375 8.0e-15 84.0 62 62.9
Ca_11609_v3 Cicer arietinum L. HOM05D001411 ORTHO05D003375 8.0e-15 84.0 65 60.0
VMungo0720G0516 Vigna mungo HOM05D001411 ORTHO05D003375 8.0e-15 84.0 65 56.9
VMungo1383G2420 Vigna mungo HOM05D001411 ORTHO05D003375 8.0e-15 84.0 65 61.5
Glyma.10G064900 Glycine max HOM05D001411 ORTHO05D003375 1.0e-14 83.6 88 51.1
Hma1.2p1_0084F.1_g043010 Hydrangea macrophylla HOM05D001411 ORTHO05D003375 1.4e-14 83.2 64 57.8
CDE06G2517 Ceratophyllum demersum HOM05D001411 ORTHO05D003375 1.8e-14 82.8 67 58.2
Actinidia32464 Actinidia chinensis HOM05D001411 ORTHO05D003375 2.3e-14 82.4 65 60.0
Lalb_Chr21g0315361 Lupinus albus HOM05D001411 ORTHO05D003375 3.0e-14 82.0 64 54.7
MSTRG.5796 Avicennia marina HOM05D001411 ORTHO05D003375 4.0e-14 81.6 74 51.4
Medtr1g061640 Medicago truncatula HOM05D001411 ORTHO05D003375 5.2e-14 81.3 65 55.4
Peaxi162Scf00795g00028 Petunia axillaris HOM05D001411 ORTHO05D003375 5.2e-14 81.3 65 58.5
Nitab4.5_0000680g0050 Nicotiana tabacum HOM05D001411 ORTHO05D003375 6.8e-14 80.9 91 47.3
Sabra06G0092400 Salix brachista HOM05D001411 ORTHO05D003375 6.8e-14 80.9 76 53.9
SEGI_15953 Sequoiadendron giganteum HOM05D001411 ORTHO05D003375 6.8e-14 80.9 83 51.8
Medtr7g103390 Medicago truncatula HOM05D001411 ORTHO05D003375 8.9e-14 80.5 70 51.4
AUR62037901 Chenopodium quinoa HOM05D001411 ORTHO05D003375 1.5e-13 79.7 65 53.8
PGR004G1417 Punica granatum HOM05D001411 ORTHO05D003375 1.5e-13 79.7 65 49.2
SHI27820 Sapria himalayana HOM05D001411 ORTHO05D003375 1.5e-13 79.7 76 50.0
Sopen09g003620 Solanum pennellii HOM05D001411 ORTHO05D003375 1.5e-13 79.7 65 60.0
PGSC0003DMG400002728 Solanum tuberosum HOM05D001411 ORTHO05D003375 1.5e-13 79.7 65 60.0
Phvul.001G185100 Phaseolus vulgaris HOM05D001411 ORTHO05D003375 2.0e-13 79.3 62 59.7
Psat3g036560 Pisum sativum HOM05D001411 ORTHO05D003375 2.6e-13 79.0 65 53.8
Dinv35855 Davidia involucrata HOM05D001411 ORTHO05D003375 3.4e-13 78.6 51 70.6
ECA248G1669 Erigeron canadensis HOM05D001411 ORTHO05D003375 5.8e-13 77.8 88 47.7
TWI13G0014 Tripterygium wilfordii HOM05D001411 ORTHO05D003375 5.8e-13 77.8 70 51.4
TWI74G0398 Tripterygium wilfordii HOM05D001411 ORTHO05D003375 5.8e-13 77.8 70 51.4
Lalb_Chr06g0172121 Lupinus albus HOM05D001411 ORTHO05D003375 9.8e-13 77.0 61 55.7
TWI53G0068 Tripterygium wilfordii HOM05D001411 ORTHO05D003375 9.8e-13 77.0 64 50.0
Solyc09g008830.3 Solanum lycopersicum HOM05D001411 ORTHO05D003375 1.3e-12 76.6 65 58.5
Migut.J00492 Erythranthe guttata HOM05D001411 ORTHO05D003375 1.7e-12 76.3 72 50.0
DCAR_017636 Daucus carota HOM05D001411 ORTHO05D003375 2.2e-12 75.9 75 50.7
Lsat_1_v5_gn_1_50761 Lactuca sativa HOM05D001411 ORTHO05D003375 2.2e-12 75.9 62 56.5
Lalb_Chr01g0018431 Lupinus albus HOM05D001411 ORTHO05D003375 2.9e-12 75.5 65 53.8
unitig_27.g25393 Utricularia gibba HOM05D001411 ORTHO05D003375 2.9e-12 75.5 70 51.4
Glyma.03G189600 Glycine max HOM05D001411 ORTHO05D003375 4.9e-12 74.7 65 56.9
HanXRQChr11g0350961 Helianthus annuus HOM05D001411 ORTHO05D003375 4.9e-12 74.7 62 58.1
MBI04_g13628_MAGBIO Magnolia biondii HOM05D001411 ORTHO05D003375 6.4e-12 74.3 64 51.6
DCAR_015025 Daucus carota HOM05D001411 ORTHO05D003375 8.3e-12 73.9 88 42.0
Ah.08g211090 Amaranthus hybridus HOM05D001411 ORTHO05D003375 1.1e-11 73.6 70 44.3
QL01p005164 Quercus lobata HOM05D001411 ORTHO05D003375 2.4e-11 72.4 61 52.5
CiPaw.13G162800 Carya illinoinensis HOM05D001411 ORTHO05D003375 4.1e-11 71.6 64 50.0
GSVIVG01025297001 Vitis vinifera HOM05D001411 ORTHO05D003375 5.4e-11 71.2 55 54.5
Medtr2g098080 Medicago truncatula HOM05D001411 ORTHO05D003375 9.2e-11 70.5 61 47.5
Ca_01290_v3 Cicer arietinum L. HOM05D001411 ORTHO05D003375 2.7e-10 68.9 64 46.9
Psat5g284880 Pisum sativum HOM05D001411 ORTHO05D003375 2.7e-10 68.9 61 47.5
SalBow3G3162 Salvia bowleyana HOM05D001411 ORTHO05D003375 2.7e-10 68.9 65 47.7
TPR.G6872 Trifolium pratense HOM05D001411 ORTHO05D003375 2.7e-10 68.9 61 49.2
arahy.Tifrunner.gnm1.ann1.79UAYX Arachis hypogaea HOM05D001411 ORTHO05D003375 3.5e-10 68.6 61 54.1
Nn2g15453 Nelumbo nucifera HOM05D001411 ORTHO05D003375 3.5e-10 68.6 64 46.9
arahy.Tifrunner.gnm1.ann1.S6C4RP Arachis hypogaea HOM05D000673 ORTHO05D000790 6.0e-10 67.8 79 45.6
Haze_23106 Corylus avellana HOM05D001411 ORTHO05D003375 6.0e-10 67.8 55 52.7
Haze_23110 Corylus avellana HOM05D001411 ORTHO05D003375 6.0e-10 67.8 55 52.7
Thhalv10020795m.g Eutrema salsugineum HOM05D001411 ORTHO05D003375 6.0e-10 67.8 64 46.9
HanXRQChr01g0028121 Helianthus annuus HOM05D001411 ORTHO05D003375 7.8e-10 67.4 70 44.3
arahy.Tifrunner.gnm1.ann1.Q5JGPT Arachis hypogaea HOM05D001411 ORTHO05D003375 1.0e-09 67.0 65 47.7
arahy.Tifrunner.gnm1.ann1.U4C9QK Arachis hypogaea HOM05D001411 ORTHO05D003375 1.0e-09 67.0 65 47.7
Sabra01G0013600 Salix brachista HOM05D001411 ORTHO05D003375 1.0e-09 67.0 55 54.5
Sed0028092 Sechium edule HOM05D001411 ORTHO05D003375 1.3e-09 66.6 61 45.9
Psat6g077000 Pisum sativum HOM05D001411 ORTHO05D003375 1.7e-09 66.2 49 59.2
Glyma.15G033800 Glycine max HOM05D001411 ORTHO05D003375 2.3e-09 65.9 61 50.8
Prupe.4G244300 Prunus persica HOM05D001411 ORTHO05D003375 2.3e-09 65.9 62 48.4
Carub.0003s0914 Capsella rubella HOM05D001411 ORTHO05D003375 6.6e-09 64.3 69 37.7
Cc00_g09000 Coffea canephora HOM05D001411 ORTHO05D003375 6.6e-09 64.3 55 52.7
MD03G1179000 Malus domestica HOM05D001411 ORTHO05D003375 6.6e-09 64.3 62 46.8
Potri.001G019200 Populus trichocarpa HOM05D001411 ORTHO05D003375 8.6e-09 63.9 55 50.9
BolC5t34460H Brassica oleracea HOM05D001411 ORTHO05D003375 1.9e-08 62.8 65 43.1
VMungo1080G0418 Vigna mungo HOM05D001411 ORTHO05D003375 1.9e-08 62.8 61 49.2
Cpa.g.sc84.71 Carica papaya HOM05D001411 ORTHO05D003375 3.3e-08 62.0 61 44.3
CAN.G575.65 Capsicum annuum HOM05D001411 ORTHO05D003375 4.3e-08 61.6 55 52.7
Lj3g0019147 Lotus japonicus HOM05D001411 ORTHO05D003375 4.3e-08 61.6 61 44.3
MD11G1198200 Malus domestica HOM05D001411 ORTHO05D003375 4.3e-08 61.6 55 50.9
SGA_v2.0_scaffold40G15434 Striga asiatica HOM05D001411 ORTHO05D003375 4.3e-08 61.6 70 42.9
PGSC0003DMG400023839 Solanum tuberosum HOM05D001411 ORTHO05D003375 5.6e-08 61.2 55 50.9
unitig_578.g15774 Utricularia gibba HOM05D001411 ORTHO05D003375 7.3e-08 60.8 72 40.3
BcaB03g11577 Brassica carinata HOM05D001411 ORTHO05D003375 9.5e-08 60.5 52 48.1
Solyc12g100040.2 Solanum lycopersicum HOM05D001411 ORTHO05D003375 1.6e-07 59.7 55 49.1
Sopen12g034660 Solanum pennellii HOM05D001411 ORTHO05D003375 1.6e-07 59.7 55 49.1
TPR.G5693 Trifolium pratense HOM05D001411 ORTHO05D003375 1.6e-07 59.7 45 60.0
Potri.003G204700 Populus trichocarpa HOM05D001411 ORTHO05D003375 2.1e-07 59.3 55 45.5
Sabra03G0151300 Salix brachista HOM05D000673 ORTHO05D000790 2.1e-07 59.3 66 43.9
Sed0024657 Sechium edule HOM05D001411 ORTHO05D003375 2.1e-07 59.3 50 56.0
AT3G10040 Arabidopsis thaliana HOM05D001411 ORTHO05D003375 2.8e-07 58.9 63 38.1
C05p58040 Brassica napus HOM05D001411 ORTHO05D003375 2.8e-07 58.9 64 42.2
Lalb_Chr22g0352361 Lupinus albus HOM05D001411 ORTHO05D003375 2.8e-07 58.9 64 40.6
Peaxi162Scf00062g00102 Petunia axillaris HOM05D001411 ORTHO05D003375 2.8e-07 58.9 55 52.7
Thecc.09G229100 Theobroma cacao HOM05D001411 ORTHO05D003375 3.6e-07 58.5 58 41.4
MELO3C014604.2 Cucumis melo HOM05D001411 ORTHO05D003375 4.7e-07 58.2 50 54.0
CsaV3_4G024170 Cucumis sativus L. HOM05D001411 ORTHO05D003375 6.2e-07 57.8 50 54.0
Duzib170G0804 Durio zibethinus HOM05D001411 ORTHO05D003375 6.2e-07 57.8 76 35.5
FvH4_3g29090 Fragaria vesca HOM05D001411 ORTHO05D003375 6.2e-07 57.8 55 45.5
FAN11G2161 Fragaria x ananassa HOM05D001411 ORTHO05D003375 6.2e-07 57.8 55 45.5
Nitab4.5_0006164g0030 Nicotiana tabacum HOM05D001411 ORTHO05D003375 6.2e-07 57.8 55 49.1
Nitab4.5_0010330g0020 Nicotiana tabacum HOM05D001411 ORTHO05D003375 8.0e-07 57.4 45 62.2
CDE10G0624 Ceratophyllum demersum HOM05D001411 ORTHO05D003375 1.1e-06 57.0 55 43.6
ATR0605G078 Amborella trichopoda HOM05D001411 ORTHO05D003375 1.4e-06 56.6 55 49.1
FAN25G0564 Fragaria x ananassa HOM05D001411 ORTHO05D003375 1.4e-06 56.6 55 43.6
Manes.06G166200 Manihot esculenta HOM05D001411 ORTHO05D003375 1.4e-06 56.6 56 46.4
FAN21G3319 Fragaria x ananassa HOM05D001411 ORTHO05D003375 1.8e-06 56.2 55 43.6
Nitab4.5_0001925g0150 Nicotiana tabacum HOM05D001411 ORTHO05D003375 1.8e-06 56.2 55 47.3
CDE06G0323 Ceratophyllum demersum HOM05D001411 ORTHO05D004166 2.3e-06 55.8 49 53.1
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 3.1e-06 55.5 51 47.1
Gohir.D01G188000 Gossypium hirsutum HOM05D001411 ORTHO05D004166 3.1e-06 55.5 65 47.7
Ah.15g091220 Amaranthus hybridus HOM05D001411 ORTHO05D003375 4.0e-06 55.1 60 38.3
Hma1.2p1_0027F.1_g017170 Hydrangea macrophylla HOM05D001411 ORTHO05D003375 4.0e-06 55.1 54 46.3
DCAR_002060 Daucus carota HOM05D001411 ORTHO05D003375 8.9e-06 53.9 55 43.6


User provided reference genes

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