Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.4e-251 872.5 428 100.0
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 5.7e-242 840.5 421 97.6
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 4.0e-211 738.0 421 85.3
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.6e-199 699.5 416 81.0
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 6.7e-198 694.1 411 80.8
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.4e-195 686.4 413 79.7
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 4.0e-195 684.9 413 78.5
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 2.9e-193 678.7 414 79.7
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 1.9e-192 676.0 414 78.0
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 3.2e-192 675.2 412 77.4
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 7.1e-192 674.1 414 77.8
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 1.6e-191 672.9 414 77.8
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 2.1e-191 672.5 413 77.2
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 4.6e-191 671.4 416 77.4
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 6.0e-191 671.0 413 77.2
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 7.9e-191 670.6 411 78.1
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 7.9e-191 670.6 413 76.8
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.3e-190 669.8 416 77.2
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 2.3e-190 669.1 400 81.0
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 2.3e-190 669.1 413 77.2
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 3.0e-190 668.7 413 75.8
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 6.7e-190 667.5 413 77.0
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 8.7e-190 667.2 409 79.5
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 1.1e-189 666.8 417 77.9
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 1.5e-189 666.4 416 77.9
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 2.5e-189 665.6 413 77.5
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 5.6e-189 664.5 414 77.1
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 9.6e-189 663.7 414 77.1
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 1.6e-188 662.9 409 77.3
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.6e-188 662.9 416 76.7
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 2.1e-188 662.5 422 74.6
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 4.8e-188 661.4 414 76.3
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 6.2e-188 661.0 414 76.1
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 8.2e-188 660.6 416 77.4
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 5.8e-186 654.4 414 77.1
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.0e-185 653.7 409 75.6
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 1.3e-185 653.3 409 75.8
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 3.8e-185 651.7 415 75.7
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 3.8e-185 651.7 412 75.7
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.1e-184 650.2 407 76.4
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 5.5e-184 647.9 412 76.2
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 7.1e-184 647.5 407 75.7
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.6e-183 646.4 407 75.7
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 2.7e-183 645.6 414 75.4
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 2.3e-182 642.5 409 75.3
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 6.7e-182 641.0 412 75.2
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 7.4e-181 637.5 418 75.1
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 2.2e-180 636.0 409 74.6
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 4.8e-180 634.8 409 73.8
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 1.1e-179 633.6 422 71.6
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 1.8e-179 632.9 411 73.2
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 2.4e-179 632.5 415 73.7
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 5.3e-179 631.3 409 76.3
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 5.3e-179 631.3 411 73.0
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 6.9e-179 630.9 414 72.2
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 6.9e-179 630.9 411 73.0
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 1.5e-178 629.8 403 75.4
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 2.0e-178 629.4 403 75.9
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 1.3e-177 626.7 413 74.1
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 2.2e-177 625.9 409 72.6
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 3.8e-177 625.2 412 73.3
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 1.9e-176 622.9 412 72.8
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 2.5e-176 622.5 415 72.3
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 9.4e-176 620.5 412 72.6
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 2.7e-175 619.0 394 74.9
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 2.3e-174 615.9 367 79.3
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 1.5e-173 613.2 418 71.5
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 1.3e-172 610.1 413 72.4
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 1.1e-171 607.1 399 72.2
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 1.4e-171 606.7 366 78.7
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 2.0e-170 602.8 434 68.2
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.4e-168 596.7 412 70.9
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 7.2e-168 594.3 407 73.2
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.6e-167 593.2 409 69.9
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 1.4e-166 590.1 415 69.2
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 5.1e-166 588.2 413 68.0
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 2.0e-165 586.3 414 68.8
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 3.3e-165 585.5 412 69.2
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 2.2e-164 582.8 410 69.5
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 6.3e-164 581.3 409 69.4
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 1.1e-163 580.5 449 63.9
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 1.8e-163 579.7 411 69.6
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 2.4e-163 579.3 412 69.7
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 4.1e-163 578.6 408 69.6
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 4.1e-163 578.6 366 74.6
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 5.3e-163 578.2 413 70.5
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 5.3e-163 578.2 410 69.5
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 7.0e-163 577.8 399 70.9
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 1.5e-162 576.6 408 69.4
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 2.0e-162 576.2 404 69.6
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 4.5e-162 575.1 410 68.8
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 5.9e-162 574.7 410 69.3
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 7.7e-162 574.3 408 69.6
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.7e-161 573.2 409 69.9
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 2.2e-161 572.8 409 68.9
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 5.0e-161 571.6 409 68.2
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 6.5e-161 571.2 408 69.4
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.9e-160 569.7 350 77.4
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 3.6e-159 565.5 408 68.9
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 3.6e-159 565.5 408 68.9
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 3.6e-159 565.5 408 68.9
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 1.4e-158 563.5 414 66.2
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 1.4e-158 563.5 408 66.7
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 3.9e-158 562.0 414 66.7
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 8.8e-158 560.8 408 68.4
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 4.4e-157 558.5 401 69.8
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.2e-156 556.2 363 74.4
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 1.9e-152 543.1 421 66.0
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 8.8e-150 534.3 364 73.1
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 2.2e-148 529.6 415 63.6
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 6.3e-140 501.5 449 56.1
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.0e-137 494.2 328 71.3
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 6.6e-137 491.5 430 59.1
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 1.0e-134 484.2 410 61.7
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 4.4e-133 478.8 409 59.9
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 9.8e-133 477.6 380 64.5
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.1e-119 433.3 416 55.5
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 4.9e-116 422.2 408 52.7
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 4.1e-115 419.1 329 67.5
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 3.1e-110 402.9 277 70.0
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 2.0e-109 400.2 487 43.9
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.6e-106 390.6 233 80.7
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 8.4e-100 368.2 404 50.7
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 4.9e-92 342.4 285 65.6
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 9.6e-88 328.2 203 76.4
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 4.0e-86 322.8 210 71.4
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 3.5e-82 309.7 377 43.5
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 7.1e-75 285.4 405 42.0
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.0e-73 280.0 248 60.5
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.5e-64 250.4 251 52.2
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 3.1e-62 243.4 430 34.7
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 1.4e-57 228.0 432 35.9
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 2.3e-57 227.3 384 39.3
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.8e-55 220.3 174 64.4
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 6.9e-54 215.7 181 60.8
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 2.0e-53 214.2 209 54.1
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 3.4e-53 213.4 213 54.0
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 5.0e-52 209.5 296 43.6
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 1.9e-51 207.6 198 54.5
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.5e-51 207.2 111 84.7
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.7e-50 203.8 111 82.9
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.0e-49 201.8 111 82.0
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 1.2e-45 188.3 202 52.5
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 2.2e-44 184.1 325 36.3
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.3e-41 174.1 111 73.9
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 6.7e-41 172.6 107 76.6
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 9.1e-38 162.2 124 62.9
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 9.4e-35 152.1 314 32.8
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 9.4e-35 152.1 122 61.5
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 1.8e-33 147.9 104 68.3
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 1.7e-31 141.4 91 69.2
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 6.5e-28 129.4 67 92.5
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 4.4e-24 116.7 125 56.0
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 1.7e-15 88.2 58 72.4
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 2.1e-10 71.2 48 68.8
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 7.5e-08 62.8 47 61.7
Gohir.D11G203250 Gossypium hirsutum HOM05D004406 ORTHO05D012367 6.4e-07 59.7 46 56.5


User provided reference genes

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