Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g109420 Amaranthus hybridus HOM05D000003 ORTHO05D000007 7.2e-130 467.2 232 100.0
Ah.01g009010 Amaranthus hybridus HOM05D000003 ORTHO05D000007 3.6e-65 252.3 223 59.2
Ah.07g201910 Amaranthus hybridus HOM05D000003 ORTHO05D000007 1.7e-51 206.8 218 51.4
Ah.10g025480 Amaranthus hybridus HOM05D000003 ORTHO05D000007 6.7e-43 178.3 243 44.9
Ah.13g067210 Amaranthus hybridus HOM05D000003 ORTHO05D000007 2.5e-26 123.2 113 52.2
Ah.07g197200 Amaranthus hybridus HOM05D000003 ORTHO05D000007 4.8e-25 119.0 108 48.1
Sopen00g011080 Solanum pennellii HOM05D000003 ORTHO05D000006 1.0e-19 101.3 96 42.7
Sopen00g009320 Solanum pennellii HOM05D000003 ORTHO05D000007 2.3e-19 100.1 96 41.7
Sopen00g007950 Solanum pennellii HOM05D000003 ORTHO05D000004 3.0e-19 99.8 96 41.7
Sopen00g012660 Solanum pennellii HOM05D000003 ORTHO05D000007 3.0e-19 99.8 137 35.8
Sopen04g011860 Solanum pennellii HOM05D000003 ORTHO05D000007 3.9e-19 99.4 96 40.6
Sopen10g008120 Solanum pennellii HOM05D000003 ORTHO05D000004 6.7e-19 98.6 202 30.7
Sopen00g003630 Solanum pennellii HOM05D000003 ORTHO05D000004 1.1e-18 97.8 96 39.6
Sopen00g007130 Solanum pennellii HOM05D000003 ORTHO05D000004 1.9e-18 97.1 146 33.6
Sopen00g006710 Solanum pennellii HOM05D000003 ORTHO05D000004 2.5e-18 96.7 96 39.6
Sopen05g020910 Solanum pennellii HOM05D000003 ORTHO05D000007 2.5e-18 96.7 96 39.6
Sopen04g018180 Solanum pennellii HOM05D000003 ORTHO05D000007 3.3e-18 96.3 204 30.9
Sopen12g011790 Solanum pennellii HOM05D000003 ORTHO05D000004 3.3e-18 96.3 96 40.6
Sopen00g008000 Solanum pennellii HOM05D000003 ORTHO05D000004 4.3e-18 95.9 96 38.5
Sopen00g008230 Solanum pennellii HOM05D000003 ORTHO05D000004 4.3e-18 95.9 97 38.1
Sopen00g010420 Solanum pennellii HOM05D000003 ORTHO05D000007 4.3e-18 95.9 204 30.4
Sopen12g026800 Solanum pennellii HOM05D000003 ORTHO05D000004 4.3e-18 95.9 145 35.2
Sopen00g008680 Solanum pennellii HOM05D000003 ORTHO05D000004 7.4e-18 95.1 139 34.5
Sopen00g013150 Solanum pennellii HOM05D000003 ORTHO05D000007 1.3e-17 94.4 204 30.9
Sopen03g013400 Solanum pennellii HOM05D000003 ORTHO05D000004 1.3e-17 94.4 96 36.5
Sopen05g024780 Solanum pennellii HOM05D000003 ORTHO05D000007 1.3e-17 94.4 96 37.5
Sopen00g004530 Solanum pennellii HOM05D000003 ORTHO05D000004 1.7e-17 94.0 97 37.1
Sopen00g008600 Solanum pennellii HOM05D000003 ORTHO05D000004 1.7e-17 94.0 97 41.2
Sopen00g009290 Solanum pennellii HOM05D000003 ORTHO05D000004 2.2e-17 93.6 139 33.1
Sopen06g013930 Solanum pennellii HOM05D000003 ORTHO05D000007 2.8e-17 93.2 138 33.3
Sopen00g004290 Solanum pennellii HOM05D000003 ORTHO05D000004 3.7e-17 92.8 204 30.9
Sopen00g009650 Solanum pennellii HOM05D000003 ORTHO05D000004 3.7e-17 92.8 96 36.5
Sopen00g009930 Solanum pennellii HOM05D000003 ORTHO05D000007 3.7e-17 92.8 205 29.3
Sopen00g010250 Solanum pennellii HOM05D000003 ORTHO05D000004 4.8e-17 92.4 96 37.5
Nitab4.5_0003690g0020 Nicotiana tabacum HOM05D000003 ORTHO05D000007 8.2e-17 91.7 153 29.4
Sopen00g008520 Solanum pennellii HOM05D000003 ORTHO05D000004 1.4e-16 90.9 144 34.0
Sopen00g008780 Solanum pennellii HOM05D000003 ORTHO05D000004 1.4e-16 90.9 140 32.1
Sopen03g013440 Solanum pennellii HOM05D000003 ORTHO05D000007 1.4e-16 90.9 93 36.6
Sopen00g004700 Solanum pennellii HOM05D000003 ORTHO05D000004 1.8e-16 90.5 142 31.7
PGSC0003DMG402017944 Solanum tuberosum HOM05D000003 ORTHO05D000007 1.8e-16 90.5 98 37.8
Sopen00g005320 Solanum pennellii HOM05D000003 ORTHO05D000004 2.4e-16 90.1 199 30.2
Sopen00g004730 Solanum pennellii HOM05D000003 ORTHO05D000004 4.1e-16 89.4 135 34.1
Ah.04g164610 Amaranthus hybridus HOM05D000003 ORTHO05D000007 5.3e-16 89.0 106 36.8
Ah.04g164680 Amaranthus hybridus HOM05D000003 ORTHO05D000007 5.3e-16 89.0 106 36.8
Peaxi162Scf00049g00077 Petunia axillaris HOM05D000003 ORTHO05D000007 5.3e-16 89.0 94 39.4
EL10As22g24223 Beta vulgaris HOM05D000003 ORTHO05D000007 6.9e-16 88.6 112 33.9
Sopen00g007050 Solanum pennellii HOM05D000003 ORTHO05D000004 9.1e-16 88.2 85 41.2
Sopen00g013920 Solanum pennellii HOM05D000003 ORTHO05D000007 9.1e-16 88.2 205 28.3
Sopen00g011480 Solanum pennellii HOM05D000003 ORTHO05D000007 1.2e-15 87.8 93 35.5
Sopen09g011430 Solanum pennellii HOM05D000003 ORTHO05D000004 1.2e-15 87.8 139 32.4
Sopen09g016100 Solanum pennellii HOM05D000003 ORTHO05D000004 1.2e-15 87.8 148 31.8
CAN.G1128.13 Capsicum annuum HOM05D000003 ORTHO05D000007 1.5e-15 87.4 94 36.2
Sopen03g011230 Solanum pennellii HOM05D000003 ORTHO05D000004 2.0e-15 87.0 195 27.7
Sopen03g026770 Solanum pennellii HOM05D000003 ORTHO05D000007 2.6e-15 86.7 96 33.3
Sopen00g005800 Solanum pennellii HOM05D000003 ORTHO05D000007 3.4e-15 86.3 96 34.4
PGSC0003DMG400026698 Solanum tuberosum HOM05D000003 ORTHO05D000007 4.5e-15 85.9 92 33.7
CAN.G279.7 Capsicum annuum HOM05D000003 ORTHO05D000006 1.0e-14 84.7 112 35.7
Sopen00g005620 Solanum pennellii HOM05D000003 ORTHO05D000004 1.0e-14 84.7 83 38.6
Sopen12g013620 Solanum pennellii HOM05D000003 ORTHO05D000004 1.0e-14 84.7 188 27.7
Peaxi162Scf00262g00132 Petunia axillaris HOM05D000003 ORTHO05D000007 1.3e-14 84.3 96 34.4
Sopen00g006870 Solanum pennellii HOM05D000003 ORTHO05D000004 1.3e-14 84.3 96 35.4
Sopen12g026830 Solanum pennellii HOM05D000003 ORTHO05D000007 1.3e-14 84.3 131 30.5
PGSC0003DMG400041473 Solanum tuberosum HOM05D000003 ORTHO05D000007 2.2e-14 83.6 96 34.4
Peaxi162Scf00363g00042 Petunia axillaris HOM05D000003 ORTHO05D000007 2.9e-14 83.2 94 34.0
Peaxi162Scf00543g00035 Petunia axillaris HOM05D000003 ORTHO05D000007 2.9e-14 83.2 142 27.5
Peaxi162Scf00537g00002 Petunia axillaris HOM05D000003 ORTHO05D000007 3.8e-14 82.8 96 35.4
Sopen05g017140 Solanum pennellii HOM05D000003 ORTHO05D000004 5.0e-14 82.4 232 27.2
Sopen05g020920 Solanum pennellii HOM05D000003 ORTHO05D000004 5.0e-14 82.4 81 40.7
PGSC0003DMG400020804 Solanum tuberosum HOM05D000003 ORTHO05D000007 6.5e-14 82.0 96 33.3
Sopen00g006450 Solanum pennellii HOM05D000003 ORTHO05D000004 8.5e-14 81.6 233 27.0
Sopen00g009000 Solanum pennellii HOM05D000003 ORTHO05D000004 8.5e-14 81.6 96 30.2
Sopen00g010970 Solanum pennellii HOM05D000003 ORTHO05D000006 8.5e-14 81.6 96 30.2
PGSC0003DMG400032773 Solanum tuberosum HOM05D000003 ORTHO05D000007 1.4e-13 80.9 117 35.9
Peaxi162Scf00164g00114 Petunia axillaris HOM05D000003 ORTHO05D000007 1.9e-13 80.5 96 36.5
TPR.G31613 Trifolium pratense HOM05D000003 ORTHO05D000007 1.9e-13 80.5 143 30.1
Ah.10g028360 Amaranthus hybridus HOM05D000003 ORTHO05D000007 3.2e-13 79.7 148 30.4
Nitab4.5_0000568g0050 Nicotiana tabacum HOM05D013827 ORTHO05D000007 4.2e-13 79.3 96 27.1
Peaxi162Scf00087g00091 Petunia axillaris HOM05D000003 ORTHO05D000007 4.2e-13 79.3 102 35.3
Peaxi162Scf00104g01625 Petunia axillaris HOM05D000003 ORTHO05D000007 9.4e-13 78.2 96 36.5
Nitab4.5_0000234g0170 Nicotiana tabacum HOM05D000003 ORTHO05D000007 1.2e-12 77.8 95 32.6
Psat3g081760 Pisum sativum HOM05D000003 ORTHO05D000007 1.2e-12 77.8 89 29.2
EL10Ac9g20695 Beta vulgaris HOM05D000003 ORTHO05D000007 2.7e-12 76.6 133 30.8
TPR.G8630 Trifolium pratense HOM05D000003 ORTHO05D000004 2.7e-12 76.6 93 30.1
Sopen12g018040 Solanum pennellii HOM05D000003 ORTHO05D000004 3.6e-12 76.3 85 34.1
EL10Ac6g14095 Beta vulgaris HOM05D000003 ORTHO05D000007 4.7e-12 75.9 116 31.9
Nitab4.5_0003434g0080 Nicotiana tabacum HOM05D000003 ORTHO05D000007 6.1e-12 75.5 93 34.4
Peaxi162Scf00841g00041 Petunia axillaris HOM05D000003 ORTHO05D000007 7.9e-12 75.1 94 29.8
Sopen05g026260 Solanum pennellii HOM05D000003 ORTHO05D000007 7.9e-12 75.1 154 27.9
TPR.G13276 Trifolium pratense HOM05D000003 ORTHO05D000004 7.9e-12 75.1 131 28.2
Nitab4.5_0002309g0100 Nicotiana tabacum HOM05D000003 ORTHO05D000007 1.8e-11 73.9 95 29.5
Peaxi162Scf00112g01218 Petunia axillaris HOM05D037098 ORTHO05D000007 2.3e-11 73.6 81 38.3
Peaxi162Scf00009g00121 Petunia axillaris HOM05D000003 ORTHO05D000007 1.1e-10 71.2 91 33.0
Peaxi162Scf01533g00028 Petunia axillaris HOM05D000003 ORTHO05D000007 1.5e-10 70.9 94 31.9
Nitab4.5_0002309g0140 Nicotiana tabacum HOM05D000003 ORTHO05D000007 3.3e-10 69.7 92 29.3
Nitab4.5_0006483g0020 Nicotiana tabacum HOM05D000003 ORTHO05D000007 3.3e-10 69.7 145 26.2
Sopen00g011710 Solanum pennellii HOM05D000003 ORTHO05D000007 3.3e-10 69.7 234 24.8
TPR.G7851 Trifolium pratense HOM05D000003 ORTHO05D000007 3.3e-10 69.7 85 32.9
Dinv19394 Davidia involucrata HOM05D000243 ORTHO05D000007 7.4e-10 68.6 94 29.8
PGSC0003DMG400041031 Solanum tuberosum HOM05D000003 ORTHO05D000007 7.4e-10 68.6 182 28.0
Dinv31264 Davidia involucrata HOM05D000003 ORTHO05D000007 1.3e-09 67.8 119 25.2
Nitab4.5_0000021g0750 Nicotiana tabacum HOM05D000003 ORTHO05D000007 1.7e-09 67.4 118 28.8
Nitab4.5_0000857g0090 Nicotiana tabacum HOM05D010714 ORTHO05D000007 1.7e-09 67.4 99 32.3
Peaxi162Scf00030g02723 Petunia axillaris HOM05D000003 ORTHO05D000006 1.7e-09 67.4 81 35.8
Peaxi162Scf00231g00048 Petunia axillaris HOM05D000003 ORTHO05D000007 1.7e-09 67.4 158 24.7
Peaxi162Scf00704g00021 Petunia axillaris HOM05D000003 ORTHO05D000007 3.7e-09 66.2 81 33.3
Peaxi162Scf00122g00098 Petunia axillaris HOM05D000003 ORTHO05D000007 4.8e-09 65.9 94 29.8
Ah.07g205790 Amaranthus hybridus HOM05D000003 ORTHO05D062190 8.2e-09 65.1 82 52.4
Dinv23885 Davidia involucrata HOM05D000003 ORTHO05D000007 8.2e-09 65.1 115 25.2
Nitab4.5_0002878g0080 Nicotiana tabacum HOM05D000003 ORTHO05D000007 1.1e-08 64.7 79 35.4
Nitab4.5_0011157g0020 Nicotiana tabacum HOM05D000003 ORTHO05D009959 1.1e-08 64.7 59 40.7
Dinv25855 Davidia involucrata HOM05D000003 ORTHO05D000007 1.4e-08 64.3 110 26.4
Sopen00g004670 Solanum pennellii HOM05D000003 ORTHO05D000004 1.4e-08 64.3 52 46.2
Sopen08g018070 Solanum pennellii HOM05D000003 ORTHO05D000007 3.1e-08 63.2 96 30.2
Sopen01g029120 Solanum pennellii HOM05D000003 ORTHO05D000007 4.1e-08 62.8 81 35.8
Peaxi162Scf00224g00101 Petunia axillaris HOM05D008162 ORTHO05D009959 1.2e-07 61.2 65 41.5
CAN.G584.47 Capsicum annuum HOM05D000040 ORTHO05D010138 1.5e-07 60.8 126 27.0
Nitab4.5_0000515g0080 Nicotiana tabacum HOM05D000003 ORTHO05D000007 1.5e-07 60.8 96 26.0
CAN.G79.73 Capsicum annuum HOM05D000003 ORTHO05D000006 2.0e-07 60.5 38 57.9
Lj4A847T39 Lonicera japonica HOM05D000003 ORTHO05D000007 2.6e-07 60.1 185 22.7
Nitab4.5_0004586g0050 Nicotiana tabacum HOM05D000003 ORTHO05D000007 2.6e-07 60.1 77 35.1
Peaxi162Scf00752g00017 Petunia axillaris HOM05D011352 ORTHO05D009959 2.6e-07 60.1 84 32.1
CAN.G1158.8 Capsicum annuum HOM05D011352 ORTHO05D009959 3.4e-07 59.7 70 35.7
Peaxi162Scf00924g00010 Petunia axillaris HOM05D008162 ORTHO05D000007 3.4e-07 59.7 96 31.2
Sopen00g006340 Solanum pennellii HOM05D000003 ORTHO05D000004 3.4e-07 59.7 96 31.2
Sopen12g013630 Solanum pennellii HOM05D000003 ORTHO05D000004 3.4e-07 59.7 96 34.4
EL10Ac1g01948 Beta vulgaris HOM05D000003 ORTHO05D000006 7.7e-07 58.5 112 25.9
Hund10169 Selenicereus undatus HOM05D000185 ORTHO05D000105 7.7e-07 58.5 112 25.0
EL10Ac7g17172 Beta vulgaris HOM05D000003 ORTHO05D000007 1.3e-06 57.8 134 26.1
EL10Ac7g17199 Beta vulgaris HOM05D000003 ORTHO05D000007 1.3e-06 57.8 99 29.3
CAN.G1506.1 Capsicum annuum HOM05D000003 ORTHO05D000007 1.3e-06 57.8 64 29.7
Dinv20159 Davidia involucrata HOM05D000041 ORTHO05D000007 1.3e-06 57.8 91 25.3
Peaxi162Scf00106g02313 Petunia axillaris HOM05D000003 ORTHO05D009959 1.3e-06 57.8 97 29.9
Sopen00g009620 Solanum pennellii HOM05D000003 ORTHO05D010407 1.3e-06 57.8 46 45.7
Ah.10g028410 Amaranthus hybridus HOM05D000003 ORTHO05D000007 1.7e-06 57.4 55 40.0
Nitab4.5_0000475g0020 Nicotiana tabacum HOM05D000003 ORTHO05D000007 2.2e-06 57.0 137 27.7
Dinv05257 Davidia involucrata HOM05D000003 ORTHO05D000007 3.8e-06 56.2 114 23.7
Dinv07777 Davidia involucrata HOM05D000003 ORTHO05D000007 3.8e-06 56.2 114 23.7
Hund08810 Selenicereus undatus HOM05D000003 ORTHO05D000007 3.8e-06 56.2 155 23.2
EL10Ac6g14081 Beta vulgaris HOM05D000003 ORTHO05D000007 5.0e-06 55.8 115 26.1
Dinv02967 Davidia involucrata HOM05D000003 ORTHO05D000006 5.0e-06 55.8 110 25.5
Hund18167 Selenicereus undatus HOM05D015999 ORTHO05D000031 5.0e-06 55.8 135 28.1
Peaxi162Scf00085g01816 Petunia axillaris HOM05D000003 ORTHO05D000007 6.5e-06 55.5 92 28.3
Hund10220 Selenicereus undatus HOM05D000003 ORTHO05D000007 6.5e-06 55.5 123 22.0
Nitab4.5_0001335g0010 Nicotiana tabacum HOM05D000003 ORTHO05D000007 8.5e-06 55.1 62 33.9


User provided reference genes

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