Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 2.7e-135 485.3 244 100.0
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 9.3e-96 354.0 221 81.0
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 7.9e-95 350.9 221 81.0
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 6.2e-92 341.3 218 79.4
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 5.3e-91 338.2 223 78.5
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 9.4e-80 300.8 200 76.0
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 4.6e-79 298.5 200 75.5
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 1.8e-78 296.6 228 66.2
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 1.8e-78 296.6 225 68.0
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 2.3e-78 296.2 200 75.0
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 8.8e-78 294.3 200 72.5
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 1.9e-77 293.1 228 66.7
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.9e-77 293.1 228 66.7
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.9e-77 293.1 228 66.7
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 1.9e-77 293.1 198 73.2
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 2.5e-77 292.7 190 77.4
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 2.5e-77 292.7 222 68.0
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 3.3e-77 292.4 216 68.5
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 5.7e-77 291.6 236 65.3
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 7.4e-77 291.2 226 66.4
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 9.7e-77 290.8 222 65.8
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 1.7e-76 290.0 187 73.8
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 1.7e-76 290.0 200 71.0
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 2.2e-76 289.7 225 67.6
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 2.8e-76 289.3 226 66.8
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 3.7e-76 288.9 222 66.7
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 3.7e-76 288.9 223 66.8
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 4.8e-76 288.5 199 72.4
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 6.3e-76 288.1 193 74.1
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 8.2e-76 287.7 225 67.1
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.1e-75 287.3 226 65.9
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.1e-75 287.3 228 65.8
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 1.1e-75 287.3 222 66.2
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 1.4e-75 287.0 199 72.4
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 1.8e-75 286.6 216 67.6
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.8e-75 286.6 193 73.1
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 5.3e-75 285.0 196 71.9
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 5.3e-75 285.0 224 66.1
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 5.3e-75 285.0 227 63.4
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 6.9e-75 284.6 189 75.1
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 6.9e-75 284.6 188 74.5
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 6.9e-75 284.6 200 71.0
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 9.1e-75 284.3 244 61.5
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 9.1e-75 284.3 193 73.6
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 9.1e-75 284.3 193 73.6
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.2e-74 283.9 200 70.5
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 1.5e-74 283.5 202 70.8
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 2.0e-74 283.1 228 66.7
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 2.6e-74 282.7 198 71.2
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 2.6e-74 282.7 193 73.6
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 2.6e-74 282.7 193 73.6
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 3.4e-74 282.3 197 71.1
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 3.4e-74 282.3 188 75.5
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 3.4e-74 282.3 193 72.5
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 4.5e-74 282.0 188 74.5
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 5.9e-74 281.6 193 72.0
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 1.0e-73 280.8 192 72.9
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 1.0e-73 280.8 234 63.7
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 1.7e-73 280.0 246 61.0
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 2.2e-73 279.6 201 67.2
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 3.8e-73 278.9 202 68.8
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 5.0e-73 278.5 244 62.3
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 1.1e-72 277.3 200 69.0
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 1.4e-72 276.9 200 68.0
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 1.9e-72 276.6 228 63.2
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 1.9e-72 276.6 194 70.6
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 2.5e-72 276.2 193 71.0
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 3.2e-72 275.8 184 74.5
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 5.5e-72 275.0 212 65.6
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 5.5e-72 275.0 236 61.4
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 9.4e-72 274.2 228 63.2
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 1.2e-71 273.9 227 63.0
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 1.6e-71 273.5 189 71.4
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 2.1e-71 273.1 200 67.5
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 4.7e-71 271.9 218 64.7
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 2.3e-70 269.6 202 67.8
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 3.0e-70 269.2 238 61.8
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 3.9e-70 268.9 202 68.3
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 5.1e-70 268.5 185 71.4
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 6.7e-70 268.1 246 60.2
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 6.7e-70 268.1 244 59.0
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 8.8e-70 267.7 178 74.2
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 5.7e-69 265.0 197 68.0
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 7.4e-69 264.6 228 60.1
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 7.4e-69 264.6 238 60.1
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 3.7e-68 262.3 240 60.4
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 6.3e-68 261.5 235 60.4
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 1.8e-67 260.0 235 60.4
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 2.4e-67 259.6 233 58.8
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 3.1e-67 259.2 177 73.4
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 4.1e-67 258.8 214 63.6
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 4.1e-67 258.8 176 70.5
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 5.3e-67 258.5 188 68.6
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 1.2e-66 257.3 226 61.5
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 2.0e-66 256.5 238 60.5
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 3.4e-66 255.8 166 75.9
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 5.9e-66 255.0 229 60.3
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 1.0e-65 254.2 195 67.7
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 1.0e-65 254.2 205 62.9
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 2.2e-65 253.1 189 68.3
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 2.2e-65 253.1 230 60.0
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 2.2e-65 253.1 230 60.0
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 6.5e-65 251.5 240 59.2
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 8.5e-65 251.1 240 58.8
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 4.2e-64 248.8 192 67.7
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 4.2e-64 248.8 236 58.5
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 9.4e-64 247.7 192 66.7
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 1.2e-63 247.3 164 73.8
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 2.7e-63 246.1 230 59.6
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 6.1e-63 245.0 189 63.5
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 2.0e-61 240.0 243 58.0
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.1e-59 234.2 221 55.7
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 4.1e-59 232.3 194 58.2
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 2.9e-57 226.1 206 56.8
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 3.0e-54 216.1 120 86.7
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 1.3e-52 210.7 178 61.2
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 4.2e-48 195.7 121 77.7
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 1.4e-46 190.7 121 75.2
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 2.2e-44 183.3 197 51.8
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 6.3e-44 181.8 142 59.2
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 4.1e-43 179.1 174 50.0
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 1.2e-42 177.6 165 57.0
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 1.7e-41 173.7 111 73.0
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 1.7e-41 173.7 182 46.2
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.3e-41 173.3 183 50.8
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 3.7e-36 156.0 157 46.5
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 3.8e-33 146.0 173 46.2
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 1.2e-26 124.4 179 36.9
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 1.0e-25 121.3 68 83.8
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 4.7e-15 85.9 145 30.3
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.5e-13 80.9 122 42.6
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 2.6e-13 80.1 97 47.4
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 1.4e-11 74.3 174 29.9


User provided reference genes

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