Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g108300 Amaranthus hybridus HOM05D004030 ORTHO05D004952 6.2e-129 464.2 236 100.0
Ah.16g108330 Amaranthus hybridus HOM05D004030 ORTHO05D004952 6.2e-129 464.2 236 100.0
Ah.16g108870 Amaranthus hybridus HOM05D004030 ORTHO05D004952 8.1e-129 463.8 236 99.6
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.1e-121 439.1 228 98.7
Ah.16g108890 Amaranthus hybridus HOM05D004030 ORTHO05D004952 6.2e-121 437.6 245 93.1
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.3e-83 313.5 169 92.3
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 1.5e-58 230.3 234 60.3
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 2.0e-39 166.8 208 50.0
Ah.16g108860 Amaranthus hybridus HOM05D004030 ORTHO05D004952 3.3e-37 159.5 89 91.0
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 2.8e-36 156.4 149 56.4
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 8.0e-36 154.8 249 42.2
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 1.5e-29 134.0 241 42.7
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 1.3e-25 120.9 248 41.1
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 1.7e-22 110.5 250 38.8
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 6.6e-22 108.6 248 37.1
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 8.6e-22 108.2 247 37.2
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 1.5e-21 107.5 250 38.4
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 2.8e-20 103.2 248 36.3
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 6.2e-20 102.1 250 34.8
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 5.2e-19 99.0 245 35.9
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 5.2e-19 99.0 238 35.3
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 2.0e-18 97.1 258 34.5
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 2.0e-18 97.1 232 33.6
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 2.6e-18 96.7 244 35.7
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 3.4e-18 96.3 239 36.4
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 3.4e-18 96.3 241 34.9
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 1.3e-17 94.4 256 34.8
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 2.9e-17 93.2 251 33.5
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 2.9e-17 93.2 142 43.0
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 2.9e-17 93.2 249 35.7
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 1.1e-16 91.3 241 32.0
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 1.1e-16 91.3 231 34.2
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.4e-16 90.9 248 32.3
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 1.9e-16 90.5 248 34.3
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 2.4e-16 90.1 245 35.1
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 3.2e-16 89.7 253 34.4
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 4.1e-16 89.4 247 32.4
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 5.4e-16 89.0 249 34.5
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 7.1e-16 88.6 258 34.1
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.2e-15 87.8 269 29.7
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.6e-15 87.4 157 40.1
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 1.6e-15 87.4 236 33.5
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 1.6e-15 87.4 254 35.0
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 3.5e-15 86.3 235 34.9
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 6.0e-15 85.5 247 31.2
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 6.0e-15 85.5 235 34.0
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 6.0e-15 85.5 265 34.3
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 1.7e-14 84.0 235 34.0
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 1.7e-14 84.0 235 34.5
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 2.3e-14 83.6 264 34.5
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 2.3e-14 83.6 271 33.6
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 3.0e-14 83.2 160 39.4
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 3.0e-14 83.2 248 30.6
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 3.0e-14 83.2 234 35.0
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 3.9e-14 82.8 140 42.1
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 3.9e-14 82.8 237 35.0
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.1e-13 81.3 264 32.2
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 1.1e-13 81.3 233 30.0
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 1.5e-13 80.9 236 33.1
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 1.9e-13 80.5 231 34.6
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 2.5e-13 80.1 248 29.8
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 2.5e-13 80.1 245 31.4
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 3.3e-13 79.7 243 32.1
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 1.6e-12 77.4 165 37.0
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 1.6e-12 77.4 233 34.3
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 2.8e-12 76.6 244 30.7
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 4.7e-12 75.9 269 33.1
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 1.8e-11 73.9 236 31.4
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 2.3e-11 73.6 256 30.1
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 2.3e-11 73.6 151 36.4
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 3.1e-11 73.2 233 32.2
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 3.1e-11 73.2 238 31.1
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 5.2e-11 72.4 136 37.5
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 6.8e-11 72.0 117 39.3
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 6.8e-11 72.0 236 30.1
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 6.8e-11 72.0 252 33.3
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 1.2e-10 71.2 259 31.7
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 1.5e-10 70.9 252 31.0
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 1.5e-10 70.9 107 43.0
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 7.6e-10 68.6 167 38.9
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 7.6e-10 68.6 107 43.0
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 7.6e-10 68.6 165 35.2
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 1.7e-09 67.4 246 30.5
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 2.2e-09 67.0 242 30.2
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 2.9e-09 66.6 229 31.0
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 2.9e-09 66.6 304 27.0
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 4.9e-09 65.9 266 29.7
SalBow5G5526 Salvia bowleyana HOM05D004030 ORTHO05D004952 6.4e-09 65.5 235 29.8
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 4.1e-08 62.8 164 32.3
Cpa.g.sc7.86 Carica papaya HOM05D004030 ORTHO05D033917 5.4e-08 62.4 148 35.1
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 5.4e-08 62.4 135 31.9
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 9.2e-08 61.6 146 31.5
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.2e-07 61.2 123 35.0
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 2.1e-07 60.5 118 38.1
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.1e-07 60.5 118 38.1
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 6.0e-07 58.9 157 31.2
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 7.8e-07 58.5 238 31.1
Lj5g0018916 Lotus japonicus HOM05D004030 ORTHO05D004952 7.8e-07 58.5 91 40.7
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 1.3e-06 57.8 232 32.3
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 1.7e-06 57.4 234 32.5
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 1.7e-06 57.4 248 29.0
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 3.9e-06 56.2 193 30.1
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 5.1e-06 55.8 235 28.5


User provided reference genes

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