Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 4.7e-38 160.6 76 100.0
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.3e-32 142.5 67 100.0
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 3.0e-32 141.4 69 95.7
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 3.9e-32 141.0 69 95.7
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 5.6e-31 137.1 69 92.8
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 1.2e-30 136.0 69 91.3
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 1.2e-30 136.0 69 91.3
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 2.3e-29 131.7 69 88.4
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 2.6e-28 128.3 69 84.1
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 3.4e-28 127.9 67 86.6
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 9.8e-28 126.3 69 82.6
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 1.3e-27 125.9 69 82.6
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 1.7e-27 125.6 69 84.1
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 2.9e-27 124.8 69 82.6
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 2.9e-27 124.8 69 81.2
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 2.9e-27 124.8 69 82.6
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 2.9e-27 124.8 69 82.6
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 2.9e-27 124.8 69 82.6
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 2.9e-27 124.8 69 82.6
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 2.9e-27 124.8 69 82.6
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 3.7e-27 124.4 69 82.6
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 6.4e-27 123.6 69 81.2
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 6.4e-27 123.6 69 81.2
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 8.3e-27 123.2 69 81.2
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 1.1e-26 122.9 69 81.2
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 1.1e-26 122.9 69 81.2
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 1.1e-26 122.9 69 79.7
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 1.4e-26 122.5 69 81.2
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 1.4e-26 122.5 69 79.7
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 1.4e-26 122.5 69 78.3
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 1.9e-26 122.1 69 79.7
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 1.9e-26 122.1 69 79.7
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 2.4e-26 121.7 69 78.3
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 2.4e-26 121.7 69 81.2
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 3.2e-26 121.3 69 79.7
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 3.2e-26 121.3 66 83.3
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 3.2e-26 121.3 69 79.7
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 3.2e-26 121.3 69 79.7
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 3.2e-26 121.3 69 79.7
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 4.1e-26 120.9 69 81.2
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 4.1e-26 120.9 69 81.2
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 4.1e-26 120.9 69 81.2
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 4.1e-26 120.9 69 78.3
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 7.0e-26 120.2 69 79.7
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 9.2e-26 119.8 69 78.3
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 9.2e-26 119.8 69 78.3
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 9.2e-26 119.8 69 79.7
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 9.2e-26 119.8 69 79.7
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 1.2e-25 119.4 69 79.7
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 1.6e-25 119.0 69 78.3
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 2.0e-25 118.6 69 78.3
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 2.0e-25 118.6 69 78.3
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 2.7e-25 118.2 69 73.9
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 2.7e-25 118.2 69 73.9
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 3.5e-25 117.9 69 78.3
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 3.5e-25 117.9 69 78.3
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 4.6e-25 117.5 69 78.3
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 4.6e-25 117.5 69 75.4
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 6.0e-25 117.1 69 76.8
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 6.0e-25 117.1 69 76.8
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 7.8e-25 116.7 69 78.3
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 7.8e-25 116.7 69 72.5
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 1.0e-24 116.3 66 78.8
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.7e-24 115.5 69 76.8
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 1.7e-24 115.5 69 73.9
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 1.7e-24 115.5 69 73.9
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 2.3e-24 115.2 66 80.3
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 2.3e-24 115.2 67 76.1
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 2.3e-24 115.2 66 78.8
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 2.3e-24 115.2 66 77.3
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 3.0e-24 114.8 69 73.9
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 5.0e-24 114.0 69 75.4
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 5.0e-24 114.0 69 72.5
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 6.6e-24 113.6 69 76.8
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 6.6e-24 113.6 69 75.4
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 8.6e-24 113.2 66 80.3
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.1e-23 112.8 69 75.4
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 1.1e-23 112.8 69 73.9
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.1e-23 112.8 69 73.9
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.1e-23 112.8 69 73.9
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.1e-23 112.8 69 73.9
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 1.1e-23 112.8 69 75.4
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 1.1e-23 112.8 70 77.1
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 1.5e-23 112.5 69 76.8
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 1.5e-23 112.5 69 75.4
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.5e-23 112.5 71 73.2
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 1.9e-23 112.1 69 75.4
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 1.9e-23 112.1 70 75.7
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 1.9e-23 112.1 70 75.7
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 1.9e-23 112.1 70 75.7
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 2.5e-23 111.7 69 72.5
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.5e-23 111.7 69 72.5
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 3.3e-23 111.3 69 72.5
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.3e-23 111.3 70 74.3
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 4.3e-23 110.9 69 75.4
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 4.3e-23 110.9 69 75.4
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 4.3e-23 110.9 66 78.8
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 4.3e-23 110.9 69 75.4
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 7.3e-23 110.2 69 72.5
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 9.5e-23 109.8 70 75.7
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 9.5e-23 109.8 69 73.9
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 9.5e-23 109.8 66 75.8
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 9.5e-23 109.8 69 71.0
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 1.6e-22 109.0 69 71.0
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 1.6e-22 109.0 70 75.7
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 1.6e-22 109.0 70 71.4
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 2.1e-22 108.6 67 77.6
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 2.1e-22 108.6 70 72.9
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 2.1e-22 108.6 70 72.9
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 2.1e-22 108.6 70 74.3
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.8e-22 108.2 70 74.3
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 3.6e-22 107.8 69 69.6
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 3.6e-22 107.8 70 72.9
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 3.6e-22 107.8 70 72.9
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.6e-22 107.8 67 74.6
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 3.6e-22 107.8 70 72.9
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 6.2e-22 107.1 69 73.9
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 8.1e-22 106.7 69 73.9
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 8.1e-22 106.7 69 73.9
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 8.1e-22 106.7 69 71.0
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 1.1e-21 106.3 69 72.5
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 3.1e-21 104.8 64 76.6
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 3.1e-21 104.8 72 65.3
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 5.2e-21 104.0 70 68.6
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 6.8e-21 103.6 69 63.8
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 8.9e-21 103.2 69 66.7
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 2.0e-20 102.1 70 70.0
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 7.5e-20 100.1 69 63.8
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 2.9e-19 98.2 72 69.4
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 4.9e-19 97.4 66 60.6
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 4.1e-18 94.4 73 63.0
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 4.6e-17 90.9 69 56.5
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 3.9e-16 87.8 69 56.5
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.1e-15 86.3 70 60.0
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.5e-15 85.9 70 60.0
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 1.9e-15 85.5 51 72.5
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 2.1e-14 82.0 66 56.1
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 3.6e-14 81.3 69 50.7
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 6.0e-09 63.9 43 67.4
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 7.8e-09 63.5 51 54.9
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 2.3e-08 62.0 64 51.6
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 3.0e-08 61.6 73 37.0


User provided reference genes

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