Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.0e-164 582.4 296 100.0
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.2e-123 446.0 236 93.6
Ah.16g108300 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.7e-121 439.1 228 98.7
Ah.16g108330 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.7e-121 439.1 228 98.7
Ah.16g108870 Amaranthus hybridus HOM05D004030 ORTHO05D004952 3.5e-121 438.7 228 98.2
Ah.16g108890 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.0e-117 427.2 244 91.8
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 7.1e-98 361.3 301 68.1
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 4.0e-77 292.4 275 60.4
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 1.4e-74 283.9 216 67.6
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 3.5e-73 279.3 316 52.5
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 1.1e-66 257.7 308 52.9
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 7.6e-60 235.0 315 49.8
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 6.7e-56 221.9 317 47.3
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 6.7e-56 221.9 237 53.6
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 5.7e-55 218.8 317 47.0
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 5.7e-55 218.8 314 46.2
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 9.7e-55 218.0 315 46.7
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 3.1e-53 213.0 325 44.3
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 4.1e-53 212.6 319 44.8
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 6.9e-53 211.8 311 46.0
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 9.1e-53 211.5 308 45.5
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 2.0e-52 210.3 312 45.2
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 5.9e-52 208.8 318 44.3
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 1.0e-51 208.0 310 43.2
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 5.0e-51 205.7 315 44.4
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 5.0e-51 205.7 313 46.3
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 1.1e-50 204.5 308 42.9
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 1.4e-50 204.1 306 45.4
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 3.2e-50 203.0 316 44.3
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 5.5e-50 202.2 309 45.3
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 7.2e-50 201.8 322 42.5
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 9.4e-50 201.4 305 43.0
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 9.4e-50 201.4 301 45.8
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 2.7e-49 199.9 209 53.1
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 1.8e-48 197.2 302 45.0
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 3.0e-48 196.4 207 54.6
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 3.0e-48 196.4 315 44.4
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 5.1e-48 195.7 306 43.8
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 5.1e-48 195.7 304 44.4
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 6.7e-48 195.3 322 43.8
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 1.5e-47 194.1 315 41.0
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 2.0e-47 193.7 310 43.5
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 5.7e-47 192.2 224 50.9
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 5.7e-47 192.2 200 56.5
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 2.2e-46 190.3 300 45.3
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 2.8e-46 189.9 198 54.0
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 2.8e-46 189.9 200 56.5
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.7e-46 189.5 328 39.9
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 4.8e-46 189.1 200 56.0
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 6.3e-46 188.7 304 43.1
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 8.2e-46 188.3 323 40.9
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 5.3e-45 185.7 303 45.2
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 6.9e-45 185.3 311 40.8
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 9.1e-45 184.9 174 58.0
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 9.1e-45 184.9 326 42.3
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 1.2e-44 184.5 184 54.9
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 1.2e-44 184.5 302 43.0
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 1.5e-44 184.1 300 44.7
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 2.0e-44 183.7 312 41.7
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.0e-44 183.7 332 41.3
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 2.0e-44 183.7 302 43.0
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 3.4e-44 183.0 228 50.0
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 4.5e-44 182.6 328 39.3
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 5.9e-44 182.2 297 43.8
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 1.0e-43 181.4 312 40.7
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 1.0e-43 181.4 301 40.5
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 1.3e-43 181.0 300 42.3
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 5.0e-43 179.1 336 40.2
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 5.0e-43 179.1 232 47.8
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 5.0e-43 179.1 190 55.3
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 5.0e-43 179.1 218 47.7
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 6.5e-43 178.7 174 56.9
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 8.5e-43 178.3 202 48.0
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 1.4e-42 177.6 336 41.4
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 1.4e-42 177.6 313 40.9
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 1.9e-42 177.2 309 41.1
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 3.2e-42 176.4 317 41.6
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 4.2e-42 176.0 213 46.9
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 1.6e-41 174.1 331 40.2
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 2.7e-41 173.3 233 46.4
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 4.7e-41 172.6 299 40.5
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 1.8e-40 170.6 203 49.8
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 2.3e-40 170.2 299 43.8
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 3.0e-40 169.9 311 37.9
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 3.9e-40 169.5 371 35.0
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 6.7e-40 168.7 309 41.7
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 2.0e-39 167.2 310 37.7
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 4.4e-39 166.0 190 48.9
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 1.7e-38 164.1 231 43.7
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 2.2e-38 163.7 185 50.8
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.2e-38 163.7 185 50.8
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 1.4e-37 161.0 314 39.5
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 1.8e-37 160.6 260 41.5
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.4e-37 160.2 302 38.7
Ah.16g108860 Amaranthus hybridus HOM05D004030 ORTHO05D004952 5.3e-37 159.1 89 89.9
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 9.1e-37 158.3 303 40.6
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 1.2e-36 157.9 298 42.3
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 1.7e-35 154.1 150 54.0
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 2.9e-35 153.3 199 45.7
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 3.8e-35 152.9 315 39.0
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 3.8e-35 152.9 175 48.0
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 3.2e-34 149.8 169 49.7
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 1.2e-33 147.9 83 81.9
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 4.0e-32 142.9 331 36.0
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 5.2e-32 142.5 67 100.0
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 6.7e-32 142.1 105 66.7
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 1.5e-31 141.0 83 78.3
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 1.5e-31 141.0 103 68.0
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 2.0e-31 140.6 336 35.1
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 3.3e-31 139.8 102 63.7
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 4.4e-31 139.4 167 50.3
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 9.7e-31 138.3 154 49.4
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 1.3e-30 137.9 103 67.0
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 3.7e-30 136.3 123 56.9
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 3.7e-30 136.3 153 45.8
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 4.8e-30 136.0 202 43.1
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 8.2e-30 135.2 167 47.9
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 2.4e-29 133.7 208 42.8
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 9.1e-29 131.7 123 55.3
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 9.1e-29 131.7 171 48.5
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 2.7e-28 130.2 76 80.3
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 7.7e-28 128.6 123 55.3
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 7.7e-28 128.6 123 55.3
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.7e-27 127.5 138 50.0
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 2.2e-27 127.1 187 40.6
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 5.0e-27 125.9 69 84.1
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 1.1e-26 124.8 86 70.9
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 1.5e-26 124.4 129 52.7
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 1.6e-25 120.9 139 49.6
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 8.0e-25 118.6 69 76.8
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 8.0e-25 118.6 187 38.5
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 3.0e-24 116.7 69 75.4
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 4.0e-24 116.3 123 49.6
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 4.4e-23 112.8 74 75.7
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 7.5e-23 112.1 108 51.9
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 8.3e-22 108.6 68 75.0
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 2.4e-21 107.1 73 64.4
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 9.1e-21 105.1 64 76.6
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 1.2e-20 104.8 225 33.8
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 2.7e-20 103.6 98 54.1
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 4.5e-20 102.8 83 57.8
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 8.6e-19 98.6 82 54.9
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 1.2e-17 94.7 170 38.2
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 7.5e-15 85.5 51 72.5
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 9.2e-13 78.6 180 33.3
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.0e-12 77.4 262 28.6
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 2.7e-12 77.0 262 28.6
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.9e-10 70.9 194 32.5
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 4.3e-10 69.7 105 39.0
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 4.7e-09 66.2 87 35.6
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 2.3e-08 63.9 43 67.4
SalBow5G5526 Salvia bowleyana HOM05D004030 ORTHO05D004952 5.2e-08 62.8 248 28.2
Cpa.g.sc7.86 Carica papaya HOM05D004030 ORTHO05D033917 5.7e-07 59.3 148 33.8
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 4.9e-06 56.2 156 30.8


User provided reference genes

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