Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g107010 Amaranthus hybridus HOM05D007136 ORTHO05D008986 1.3e-168 596.3 304 100.0
AUR62038352 Chenopodium quinoa HOM05D007136 ORTHO05D008986 2.6e-127 459.1 302 74.5
EL10Ac2g03388 Beta vulgaris HOM05D007136 ORTHO05D008986 5.3e-117 424.9 353 62.9
Thecc.10G044100 Theobroma cacao HOM05D007136 ORTHO05D008986 1.6e-108 396.7 308 62.0
Dinv26003 Davidia involucrata HOM05D007136 ORTHO05D008986 7.7e-108 394.4 307 62.9
Hund20032 Selenicereus undatus HOM05D007136 ORTHO05D008986 1.0e-107 394.0 287 67.2
GSVIVG01016535001 Vitis vinifera HOM05D007136 ORTHO05D008986 1.9e-106 389.8 307 61.9
Gohir.D10G226000 Gossypium hirsutum HOM05D007136 ORTHO05D008986 1.4e-104 383.6 308 59.7
Gorai.011G257200 Gossypium raimondii HOM05D007136 ORTHO05D008986 2.3e-104 382.9 308 59.7
Gohir.A10G217300 Gossypium hirsutum HOM05D007136 ORTHO05D008986 4.0e-104 382.1 308 59.7
Nn2g10391 Nelumbo nucifera HOM05D007136 ORTHO05D008986 1.5e-103 380.2 307 60.3
CANSAT56G3368 Cannabis sativa HOM05D007136 ORTHO05D008986 2.0e-103 379.8 306 60.8
Hma1.2p1_0683F.1_g202870 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 2.2e-102 376.3 307 59.9
Rhsim09G0165500 Rhododendron simsii HOM05D007136 ORTHO05D008986 1.4e-101 373.6 307 59.3
TAR633G2090 Trochodendron aralioides HOM05D000330 ORTHO05D008986 1.4e-101 373.6 307 59.0
Cc02_g07990 Coffea canephora HOM05D007136 ORTHO05D008986 3.2e-101 372.5 307 59.3
CiPaw.01G285300 Carya illinoinensis HOM05D007136 ORTHO05D008986 1.6e-100 370.2 309 59.5
RcHm_v2.0_Chr1g0366511 Rosa chinensis HOM05D007136 ORTHO05D008986 1.6e-100 370.2 307 58.0
Atru.chr12.462 Acer truncatum HOM05D007136 ORTHO05D008986 4.5e-100 368.6 307 59.3
Migut.F01500 Erythranthe guttata HOM05D007136 ORTHO05D008986 4.5e-100 368.6 308 58.8
MD07G1196400 Malus domestica HOM05D007136 ORTHO05D008986 4.5e-100 368.6 307 56.4
Ciclev10032197m.g Citrus clementina HOM05D007136 ORTHO05D008986 1.0e-99 367.5 307 59.3
vmacro10240 Vaccinium macrocarpon HOM05D007136 ORTHO05D008986 1.0e-99 367.5 308 58.1
Prupe.2G233400 Prunus persica HOM05D007136 ORTHO05D008986 1.3e-99 367.1 307 56.7
Potri.010G205900 Populus trichocarpa HOM05D007136 ORTHO05D008986 1.5e-98 363.6 307 58.6
Atru.chr12.484 Acer truncatum HOM05D007136 ORTHO05D008986 4.3e-98 362.1 307 58.3
Haze_17049 Corylus avellana HOM05D007136 ORTHO05D008986 4.3e-98 362.1 318 56.9
TWI15G0021 Tripterygium wilfordii HOM05D007136 ORTHO05D008986 7.3e-98 361.3 309 56.0
Ca_07254_v3 Cicer arietinum L. HOM05D007136 ORTHO05D008986 9.5e-98 360.9 309 57.9
FvH4_7g22120 Fragaria vesca HOM05D007136 ORTHO05D008986 6.1e-97 358.2 307 56.4
FAN01G1261 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.4e-96 357.1 307 56.0
FAN06G2040 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.4e-96 357.1 307 56.0
Lj1g0011729 Lotus japonicus HOM05D007136 ORTHO05D008986 2.3e-96 356.3 308 57.5
Glyma.18G289500 Glycine max HOM05D007136 ORTHO05D008986 4.0e-96 355.5 309 54.0
Medtr7g024560 Medicago truncatula HOM05D007136 ORTHO05D008986 6.8e-96 354.8 309 56.6
FAN01G1850 Fragaria x ananassa HOM05D007136 ORTHO05D008986 8.9e-96 354.4 307 56.0
Psat3g181320 Pisum sativum HOM05D007136 ORTHO05D008986 1.5e-95 353.6 309 56.3
PGR044G0021 Punica granatum HOM05D007136 ORTHO05D008986 2.6e-95 352.8 304 56.2
arahy.Tifrunner.gnm1.ann1.IQ4HGL Arachis hypogaea HOM05D007136 ORTHO05D008986 7.5e-95 351.3 310 56.5
arahy.Tifrunner.gnm1.ann1.RSMT0C Arachis hypogaea HOM05D007136 ORTHO05D008986 7.5e-95 351.3 310 56.5
FAN06G2061 Fragaria x ananassa HOM05D007136 ORTHO05D008986 7.5e-95 351.3 308 55.2
SGA_v2.0_scaffold86G26943 Striga asiatica HOM05D007136 ORTHO05D008986 7.5e-95 351.3 302 55.3
VMungo1383G1564 Vigna mungo HOM05D007136 ORTHO05D008986 1.3e-94 350.5 309 54.4
Lsat_1_v5_gn_2_119701 Lactuca sativa HOM05D007136 ORTHO05D008986 3.7e-94 349.0 305 57.0
MSTRG.8246 Avicennia marina HOM05D007136 ORTHO05D008986 6.4e-94 348.2 308 55.5
Actinidia29223 Actinidia chinensis HOM05D007136 ORTHO05D008986 3.2e-93 345.9 308 55.8
DCAR_027635 Daucus carota HOM05D007136 ORTHO05D008986 5.4e-93 345.1 307 56.0
SalBow6G2062 Salvia bowleyana HOM05D007136 ORTHO05D008986 9.2e-93 344.4 308 54.5
ECA238G4577 Erigeron canadensis HOM05D007136 ORTHO05D008986 1.2e-92 344.0 311 55.6
Peaxi162Scf00658g00728 Petunia axillaris HOM05D007136 ORTHO05D008986 2.7e-92 342.8 306 55.6
Phvul.008G012700 Phaseolus vulgaris HOM05D007136 ORTHO05D008986 2.7e-92 342.8 309 54.0
Sopen06g013560 Solanum pennellii HOM05D007136 ORTHO05D008986 3.5e-92 342.4 308 53.6
HanXRQChr14g0458151 Helianthus annuus HOM05D007136 ORTHO05D008986 7.8e-92 341.3 308 56.2
FAN03G0232 Fragaria x ananassa HOM05D007136 ORTHO05D008986 3.0e-91 339.3 307 54.1
Nitab4.5_0000931g0010 Nicotiana tabacum HOM05D007136 ORTHO05D008986 6.6e-91 338.2 308 54.2
Lalb_Chr10g0091721 Lupinus albus HOM05D007136 ORTHO05D008986 5.6e-90 335.1 309 52.4
Aqoxy2G02097 Aquilegia oxysepala HOM05D007136 ORTHO05D008986 1.2e-89 334.0 308 53.2
COL.COLO4_14997 Corchorus olitorius HOM05D007136 ORTHO05D008986 2.8e-89 332.8 352 50.0
TPR.G15525 Trifolium pratense HOM05D007136 ORTHO05D008986 2.8e-89 332.8 309 53.4
ClCG09G019950 Citrullus lanatus HOM05D007136 ORTHO05D008986 8.0e-89 331.3 308 52.3
QL08p059192 Quercus lobata HOM05D007136 ORTHO05D008986 1.8e-88 330.1 430 43.0
Sabra10G0159100 Salix brachista HOM05D007136 ORTHO05D008986 2.3e-88 329.7 353 51.6
Sed0006263 Sechium edule HOM05D007136 ORTHO05D008986 3.1e-88 329.3 307 51.5
Cfa001492 Carpinus fangiana HOM05D007136 ORTHO05D008986 1.5e-87 327.0 271 58.7
CsaV3_5G026510 Cucumis sativus L. HOM05D007136 ORTHO05D008986 2.9e-86 322.8 308 49.0
MELO3C021650.2 Cucumis melo HOM05D007136 ORTHO05D008986 1.1e-85 320.9 308 49.0
Nitab4.5_0000065g0080 Nicotiana tabacum HOM05D007136 ORTHO05D008986 7.8e-84 314.7 308 51.6
Sc09g0007080 Simmondsia chinensis HOM05D007136 ORTHO05D008986 8.9e-80 301.2 222 67.6
PSO339G3352 Papaver somniferum HOM05D007136 ORTHO05D008986 1.5e-79 300.4 305 48.5
BraA05t23073Z Brassica rapa HOM05D007136 ORTHO05D008986 2.6e-79 299.7 306 47.7
THA.LOC104799346 Tarenaya hassleriana HOM05D007136 ORTHO05D008986 1.3e-78 297.4 305 47.5
C05p63040 Brassica napus HOM05D007136 ORTHO05D008986 1.7e-78 297.0 306 47.4
BolC5t34957H Brassica oleracea HOM05D007136 ORTHO05D008986 1.7e-78 297.0 306 47.4
Sp3g03000 Schrenkiella parvula HOM05D007136 ORTHO05D008986 4.9e-78 295.4 306 47.7
Aa31LG5G14590 Aethionema arabicum HOM05D007136 ORTHO05D008986 1.9e-77 293.5 311 46.9
PSO151G0201 Papaver somniferum HOM05D007136 ORTHO05D008986 5.4e-77 292.0 304 47.0
ATR0559G284 Amborella trichopoda HOM05D007136 ORTHO05D008986 2.7e-76 289.7 292 48.6
Eucgr.J00020 Eucalyptus grandis HOM05D007136 ORTHO05D008986 4.6e-76 288.9 233 58.4
Carub.0003s0327 Capsella rubella HOM05D007136 ORTHO05D008986 7.8e-76 288.1 306 46.1
CARHR078150 Cardamine hirsuta HOM05D007136 ORTHO05D008986 2.3e-75 286.6 306 44.8
Manes.07G114900 Manihot esculenta HOM05D007136 ORTHO05D008986 3.9e-75 285.8 237 57.4
AL3G13930 Arabidopsis lyrata HOM05D007136 ORTHO05D008986 5.1e-75 285.4 306 45.4
A05p43340 Brassica napus HOM05D007136 ORTHO05D008986 5.6e-74 282.0 301 46.2
HPP92_001682 Vanilla planifolia HOM05D007136 ORTHO05D008986 1.2e-73 280.8 304 47.0
BcaC05g30543 Brassica carinata HOM05D007136 ORTHO05D008986 1.6e-73 280.4 289 48.1
Thhalv10021212m.g Eutrema salsugineum HOM05D007136 ORTHO05D008986 1.1e-72 277.7 306 45.1
Os03g0276600 Oryza sativa ssp. japonica HOM05D007136 ORTHO05D008986 6.8e-72 275.0 308 44.2
unitig_736.g22315 Utricularia gibba HOM05D007136 ORTHO05D008986 8.9e-72 274.6 324 47.8
MBI05_g22899_MAGBIO Magnolia biondii HOM05D007136 ORTHO05D008986 4.9e-70 268.9 297 48.5
Hma1.2p1_0683F.1_g202860 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 4.2e-69 265.8 250 55.2
CSS0027543 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 5.1e-67 258.8 266 51.5
CSS0005502 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 1.1e-66 257.7 266 51.1
CDE09G1315 Ceratophyllum demersum HOM05D007136 ORTHO05D008986 3.6e-65 252.7 308 44.2
Zm00001eb012480 Zea mays HOM05D007136 ORTHO05D008986 1.2e-63 247.7 301 42.9
Cpa.g.sc1.397 Carica papaya HOM05D007136 ORTHO05D008986 1.5e-63 247.3 241 53.5
Duzib106G1934 Durio zibethinus HOM05D007136 ORTHO05D008986 9.3e-61 238.0 175 62.3
Solyc06g043070.4 Solanum lycopersicum HOM05D007136 ORTHO05D008986 2.7e-60 236.5 238 49.6
Dinv31448 Davidia involucrata HOM05D007136 ORTHO05D008986 6.0e-60 235.3 237 51.9
SEGI_31981 Sequoiadendron giganteum HOM05D007136 ORTHO05D008986 7.9e-60 235.0 292 39.4
Lj4C909G7 Lonicera japonica HOM05D007136 ORTHO05D008986 3.1e-56 223.0 219 54.8
AT3G04020 Arabidopsis thaliana HOM05D007136 ORTHO05D008986 1.6e-52 210.7 240 45.4
AUR62041862 Chenopodium quinoa HOM05D007136 ORTHO05D008986 3.2e-45 186.4 115 73.9
Pp3c12_11030 Physcomitrium patens HOM05D007136 ORTHO05D008986 2.5e-42 176.8 295 31.9
AUR62041861 Chenopodium quinoa HOM05D007136 ORTHO05D008986 3.3e-42 176.4 113 78.8
Glyma.02G092900 Glycine max HOM05D007136 ORTHO05D008986 3.7e-41 172.9 242 39.7
Mapoly0002s0030 Marchantia polymorpha HOM05D007136 ORTHO05D008986 7.2e-29 132.1 276 27.5
CSS0002221 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 2.9e-22 110.2 67 71.6
CSS0010171 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 1.1e-21 108.2 67 70.1
Solyc06g043060.1 Solanum lycopersicum HOM05D007136 ORTHO05D008986 5.5e-21 105.9 68 64.7
CAN.G1401.1 Capsicum annuum HOM05D007136 ORTHO05D008986 2.1e-20 104.0 63 69.8
FAN10G3057 Fragaria x ananassa HOM05D007136 ORTHO05D025577 5.1e-19 99.4 64 65.6


User provided reference genes

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