Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g106040 Amaranthus hybridus HOM05D007491 ORTHO05D009489 3.0e-67 258.5 136 100.0
EL10Ac2g04054 Beta vulgaris HOM05D007491 ORTHO05D009489 8.5e-22 107.5 85 74.1
AUR62009312 Chenopodium quinoa HOM05D007491 ORTHO05D009489 2.5e-21 105.9 89 70.8
Hund19532 Selenicereus undatus HOM05D007491 ORTHO05D009489 1.3e-14 83.6 89 60.7
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 7.2e-13 77.8 97 50.5
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 9.4e-13 77.4 96 54.2
GSVIVG01035656001 Vitis vinifera HOM05D007491 ORTHO05D009489 2.1e-12 76.3 101 49.5
Duzib187G0523 Durio zibethinus HOM05D007491 ORTHO05D009489 3.6e-12 75.5 96 51.0
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 4.7e-12 75.1 96 50.0
Ciclev10010011m.g Citrus clementina HOM05D007491 ORTHO05D009489 1.8e-11 73.2 95 49.5
Peaxi162Scf00231g00326 Petunia axillaris HOM05D007491 ORTHO05D009489 3.0e-11 72.4 91 50.5
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 5.1e-11 71.6 101 47.5
TWI63G0394 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 5.1e-11 71.6 97 50.5
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 8.8e-11 70.9 101 47.5
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 8.8e-11 70.9 88 50.0
Nn3g18087 Nelumbo nucifera HOM05D007491 ORTHO05D009489 1.1e-10 70.5 102 50.0
TAR383G0584 Trochodendron aralioides HOM05D007491 ORTHO05D009489 1.1e-10 70.5 96 50.0
Oeu013426.2 Olea europaea HOM05D007491 ORTHO05D009489 2.6e-10 69.3 93 49.5
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 4.4e-10 68.6 95 49.5
TWI32G0642 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 4.4e-10 68.6 55 67.3
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 7.4e-10 67.8 57 68.4
Dinv41621 Davidia involucrata HOM05D007491 ORTHO05D009489 7.4e-10 67.8 94 47.9
TWI34G1809 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 7.4e-10 67.8 97 46.4
BcaC01g01475 Brassica carinata HOM05D007491 ORTHO05D009489 9.7e-10 67.4 71 53.5
C03p92400 Brassica napus HOM05D007491 ORTHO05D009489 9.7e-10 67.4 71 53.5
Gohir.A06G094700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 9.7e-10 67.4 107 44.9
Lj2g0023927 Lotus japonicus HOM05D007491 ORTHO05D009489 1.3e-09 67.0 87 51.7
arahy.Tifrunner.gnm1.ann1.KI7M62 Arachis hypogaea HOM05D007491 ORTHO05D009489 1.7e-09 66.6 56 60.7
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 1.7e-09 66.6 95 49.5
Dinv36653 Davidia involucrata HOM05D007491 ORTHO05D009489 2.2e-09 66.2 91 48.4
AL1G63250 Arabidopsis lyrata HOM05D007491 ORTHO05D009489 8.2e-09 64.3 57 66.7
BolC3t21548H Brassica oleracea HOM05D007491 ORTHO05D009489 8.2e-09 64.3 63 57.1
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 8.2e-09 64.3 94 44.7
CDE05G2495 Ceratophyllum demersum HOM05D001777 ORTHO05D001809 1.1e-08 63.9 81 45.7
CARHR044840 Cardamine hirsuta HOM05D007491 ORTHO05D009489 1.4e-08 63.5 67 58.2
ECA234G1405 Erigeron canadensis HOM05D007491 ORTHO05D009489 1.4e-08 63.5 64 57.8
Gohir.A07G005300 Gossypium hirsutum HOM05D007491 ORTHO05D009489 1.8e-08 63.2 80 50.0
Gohir.D07G006700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 1.8e-08 63.2 80 50.0
A08p00850 Brassica napus HOM05D007491 ORTHO05D009489 2.4e-08 62.8 63 55.6
PSO782G0237 Papaver somniferum HOM05D007491 ORTHO05D009489 2.4e-08 62.8 82 48.8
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 2.4e-08 62.8 95 45.3
TPR.G23496 Trifolium pratense HOM05D007491 ORTHO05D009489 2.4e-08 62.8 53 64.2
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 3.1e-08 62.4 95 45.3
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 3.1e-08 62.4 91 48.4
Hma1.2p1_1463F.1_g285180 Hydrangea macrophylla HOM05D007491 ORTHO05D009489 3.1e-08 62.4 63 55.6
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 3.1e-08 62.4 98 45.9
THA.LOC104822629 Tarenaya hassleriana HOM05D007491 ORTHO05D009489 3.1e-08 62.4 93 45.2
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 4.1e-08 62.0 94 46.8
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 4.1e-08 62.0 57 63.2
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 4.1e-08 62.0 93 46.2
Haze_25768 Corylus avellana HOM05D007491 ORTHO05D009489 7.0e-08 61.2 90 43.3
A06p00340 Brassica napus HOM05D007491 ORTHO05D009489 9.1e-08 60.8 101 43.6
BraA06t23249Z Brassica rapa HOM05D007491 ORTHO05D009489 9.1e-08 60.8 101 43.6
CDE05G0808 Ceratophyllum demersum HOM05D007491 ORTHO05D009489 9.1e-08 60.8 81 44.4
MBI01_g30748_MAGBIO Magnolia biondii HOM05D007491 ORTHO05D009489 9.1e-08 60.8 74 52.7
BraA08t32143Z Brassica rapa HOM05D007491 ORTHO05D009489 1.2e-07 60.5 60 55.0
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 1.2e-07 60.5 57 63.2
Lsat_1_v5_gn_5_33441 Lactuca sativa HOM05D007491 ORTHO05D009489 1.2e-07 60.5 49 69.4
ClCG11G002390 Citrullus lanatus HOM05D007491 ORTHO05D009489 1.5e-07 60.1 86 48.8
MD15G1182000 Malus domestica HOM05D007491 ORTHO05D009489 1.5e-07 60.1 94 47.9
PSO566G0269 Papaver somniferum HOM05D007491 ORTHO05D009489 1.5e-07 60.1 82 47.6
BolC6t36089H Brassica oleracea HOM05D000490 ORTHO05D000785 2.0e-07 59.7 94 43.6
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 2.0e-07 59.7 67 49.3
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 2.0e-07 59.7 67 49.3
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 2.0e-07 59.7 87 43.7
CANSAT78G0421 Cannabis sativa HOM05D007491 ORTHO05D009489 2.6e-07 59.3 87 48.3
Cfa003238 Carpinus fangiana HOM05D007491 ORTHO05D009489 2.6e-07 59.3 60 51.7
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 2.6e-07 59.3 53 66.0
HanXRQChr12g0355021 Helianthus annuus HOM05D007491 ORTHO05D009489 2.6e-07 59.3 60 51.7
C06p10160 Brassica napus HOM05D007491 ORTHO05D009489 3.4e-07 58.9 97 43.3
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 3.4e-07 58.9 90 46.7
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 4.5e-07 58.5 67 49.3
Sabra18G0070600 Salix brachista HOM05D007491 ORTHO05D009489 4.5e-07 58.5 97 43.3
arahy.Tifrunner.gnm1.ann1.RT52KZ Arachis hypogaea HOM05D007491 ORTHO05D009489 5.9e-07 58.2 51 58.8
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 5.9e-07 58.2 75 48.0
HanXRQChr10g0318621 Helianthus annuus HOM05D007491 ORTHO05D009489 5.9e-07 58.2 78 47.4
Lsat_1_v5_gn_5_103040 Lactuca sativa HOM05D007491 ORTHO05D009489 5.9e-07 58.2 55 58.2
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 7.7e-07 57.8 84 46.4
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 7.7e-07 57.8 85 44.7
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 1.0e-06 57.4 46 67.4
CsaV3_2G002190 Cucumis sativus L. HOM05D007491 ORTHO05D009489 2.2e-06 56.2 94 43.6
Thhalv10021835m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 2.2e-06 56.2 53 60.4
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 2.2e-06 56.2 96 40.6
MD02G1043400 Malus domestica HOM05D007491 ORTHO05D009489 2.2e-06 56.2 93 43.0
Os02g0273900 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 2.2e-06 56.2 50 60.0
FAN26G2745 Fragaria x ananassa HOM05D001691 ORTHO05D001704 2.9e-06 55.8 44 63.6
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 2.9e-06 55.8 82 43.9
Manes.03G022800 Manihot esculenta HOM05D007491 ORTHO05D009489 3.8e-06 55.5 56 55.4
Sp1g40890 Schrenkiella parvula HOM05D007491 ORTHO05D009489 3.8e-06 55.5 53 56.6
VMungo0251G1641 Vigna mungo HOM05D007491 ORTHO05D009489 5.0e-06 55.1 86 41.9
Carub.0003s1318 Capsella rubella HOM05D007491 ORTHO05D009489 6.5e-06 54.7 53 62.3
Os06g0332500 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 6.5e-06 54.7 54 53.7
CARHR088390 Cardamine hirsuta HOM05D007491 ORTHO05D009489 8.5e-06 54.3 53 60.4


User provided reference genes

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