Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g105840 Amaranthus hybridus HOM05D006609 ORTHO05D008551 2.2e-140 502.3 255 100.0
Hund03393 Selenicereus undatus HOM05D006609 ORTHO05D008551 1.9e-107 392.9 255 77.3
AUR62042442 Chenopodium quinoa HOM05D006609 ORTHO05D008551 2.7e-106 389.0 255 76.1
Sc09g0009360 Simmondsia chinensis HOM05D006609 ORTHO05D008551 1.8e-94 349.7 255 67.8
Actinidia13339 Actinidia chinensis HOM05D006609 ORTHO05D008551 2.8e-87 325.9 250 64.4
PGR031G0123 Punica granatum HOM05D006609 ORTHO05D008551 4.5e-85 318.5 250 62.0
GSVIVG01035613001 Vitis vinifera HOM05D006609 ORTHO05D008551 1.7e-84 316.6 254 61.4
CSS0000910 Camellia sinensis var. sinensis HOM05D006609 ORTHO05D008551 2.9e-84 315.8 247 65.2
MBI04_g06585_MAGBIO Magnolia biondii HOM05D006609 ORTHO05D008551 2.5e-83 312.8 251 63.3
TAR626G1286 Trochodendron aralioides HOM05D006609 ORTHO05D008551 9.4e-83 310.8 251 62.2
Aqoxy7G01461 Aquilegia oxysepala HOM05D006609 ORTHO05D008551 1.8e-81 306.6 254 60.2
Manes.16G074700 Manihot esculenta HOM05D006609 ORTHO05D008551 4.0e-81 305.4 253 61.7
Gohir.D05G047900 Gossypium hirsutum HOM05D006609 ORTHO05D008551 2.0e-80 303.1 253 62.5
Nn8g39112 Nelumbo nucifera HOM05D006609 ORTHO05D008551 2.0e-80 303.1 255 61.2
VMungo0647G0700 Vigna mungo HOM05D006609 ORTHO05D008551 3.4e-80 302.4 247 61.5
Glyma.17G192700 Glycine max HOM05D006609 ORTHO05D008551 5.7e-80 301.6 250 60.4
TWI63G1544 Tripterygium wilfordii HOM05D006609 ORTHO05D008551 3.7e-79 298.9 254 59.4
Cfa013375 Carpinus fangiana HOM05D006609 ORTHO05D008551 6.3e-79 298.1 251 59.4
MD15G1092400 Malus domestica HOM05D006609 ORTHO05D008551 1.1e-78 297.4 251 60.2
CiPaw.07G203500 Carya illinoinensis HOM05D006609 ORTHO05D008551 3.1e-78 295.8 250 59.6
Phvul.001G063300 Phaseolus vulgaris HOM05D006609 ORTHO05D008551 3.1e-78 295.8 251 61.4
Dinv27894 Davidia involucrata HOM05D006609 ORTHO05D008551 4.1e-78 295.4 233 64.4
CANSAT25G3446 Cannabis sativa HOM05D006609 ORTHO05D008551 5.4e-78 295.0 248 60.9
Potri.006G237600 Populus trichocarpa HOM05D006609 ORTHO05D008551 1.2e-77 293.9 241 60.2
arahy.Tifrunner.gnm1.ann1.TZ2NYQ Arachis hypogaea HOM05D006609 ORTHO05D008551 1.6e-77 293.5 253 59.7
Thecc.09G046100 Theobroma cacao HOM05D006609 ORTHO05D008551 1.6e-77 293.5 253 60.9
arahy.Tifrunner.gnm1.ann1.519I88 Arachis hypogaea HOM05D006609 ORTHO05D008551 3.5e-77 292.4 253 59.7
Lj1g0027455 Lotus japonicus HOM05D006609 ORTHO05D008551 3.5e-77 292.4 251 59.4
MSTRG.25911 Avicennia marina HOM05D006609 ORTHO05D008551 1.0e-76 290.8 252 58.3
COL.COLO4_20980 Corchorus olitorius HOM05D006609 ORTHO05D008551 8.6e-76 287.7 253 58.5
Duzib168G0257 Durio zibethinus HOM05D006609 ORTHO05D008551 1.1e-75 287.3 254 61.0
Lalb_Chr24g0402671 Lupinus albus HOM05D006609 ORTHO05D008551 1.1e-75 287.3 252 60.7
Lsat_1_v5_gn_6_22680 Lactuca sativa HOM05D006609 ORTHO05D008551 1.5e-75 287.0 243 60.9
QL12p041270 Quercus lobata HOM05D006609 ORTHO05D008551 1.5e-75 287.0 230 63.0
Migut.A00197 Erythranthe guttata HOM05D006609 ORTHO05D008551 1.9e-75 286.6 252 54.8
CAN.G208.62 Capsicum annuum HOM05D006609 ORTHO05D008551 4.2e-75 285.4 252 57.1
MD08G1113000 Malus domestica HOM05D006609 ORTHO05D008551 1.2e-74 283.9 251 57.4
CDE02G0347 Ceratophyllum demersum HOM05D006609 ORTHO05D008551 2.8e-74 282.7 246 57.7
Rhsim02G0176600 Rhododendron simsii HOM05D006609 ORTHO05D008551 4.7e-74 282.0 231 62.8
RhsimUnG0061900 Rhododendron simsii HOM05D006609 ORTHO05D008551 4.7e-74 282.0 231 62.8
ATR0705G113 Amborella trichopoda HOM05D006609 ORTHO05D008551 8.0e-74 281.2 250 58.4
Hma1.2p1_1138F.1_g260815 Hydrangea macrophylla HOM05D006609 ORTHO05D008551 8.0e-74 281.2 234 63.2
Peaxi162Scf00064g01521 Petunia axillaris HOM05D006609 ORTHO05D008551 8.0e-74 281.2 247 58.3
Ca_03364_v3 Cicer arietinum L. HOM05D006609 ORTHO05D008551 1.0e-73 280.8 251 57.4
Psat6g037080 Pisum sativum HOM05D006609 ORTHO05D008551 1.0e-73 280.8 251 57.4
Sopen12g031720 Solanum pennellii HOM05D006609 ORTHO05D008551 2.3e-73 279.6 250 57.2
Ciclev10009282m.g Citrus clementina HOM05D006609 ORTHO05D008551 6.8e-73 278.1 245 57.1
ClCG11G015120 Citrullus lanatus HOM05D006609 ORTHO05D008551 1.5e-72 276.9 251 61.0
Eucgr.C00603 Eucalyptus grandis HOM05D006609 ORTHO05D008551 1.5e-72 276.9 234 60.3
TPR.G24534 Trifolium pratense HOM05D006609 ORTHO05D008551 2.0e-72 276.6 251 57.0
MELO3C003467.2 Cucumis melo HOM05D006609 ORTHO05D008551 2.6e-72 276.2 251 61.0
Gorai.009G049200 Gossypium raimondii HOM05D006609 ORTHO05D008551 2.6e-72 276.2 232 62.1
FvH4_2g35350 Fragaria vesca HOM05D006609 ORTHO05D008551 3.4e-72 275.8 251 56.6
RcHm_v2.0_Chr6g0306561 Rosa chinensis HOM05D006609 ORTHO05D008551 3.4e-72 275.8 251 56.6
Sed0023433 Sechium edule HOM05D006609 ORTHO05D008551 9.8e-72 274.2 251 60.6
THA.LOC104808485 Tarenaya hassleriana HOM05D006609 ORTHO05D008551 3.7e-71 272.3 249 58.6
Atru.chr7.2079 Acer truncatum HOM05D006609 ORTHO05D008551 6.3e-71 271.6 238 59.7
AUR62009264 Chenopodium quinoa HOM05D006609 ORTHO05D008551 8.3e-71 271.2 169 79.3
PSO173G0006 Papaver somniferum HOM05D006609 ORTHO05D008551 1.1e-70 270.8 250 52.8
PSO824G0011 Papaver somniferum HOM05D006609 ORTHO05D008551 1.1e-70 270.8 250 52.8
HPP92_021778 Vanilla planifolia HOM05D006609 ORTHO05D008551 1.4e-70 270.4 247 55.9
Sabra06G0185800 Salix brachista HOM05D006609 ORTHO05D008551 9.2e-70 267.7 292 51.4
SalBow4G0386 Salvia bowleyana HOM05D006609 ORTHO05D008551 2.7e-69 266.2 232 57.3
Cc08_g09720 Coffea canephora HOM05D006609 ORTHO05D008551 3.5e-69 265.8 246 56.1
Medtr1g007120 Medicago truncatula HOM05D006609 ORTHO05D008551 3.5e-69 265.8 250 54.4
PGSC0003DMG400029395 Solanum tuberosum HOM05D006609 ORTHO05D008551 4.5e-69 265.4 233 57.9
Thhalv10014470m.g Eutrema salsugineum HOM05D006609 ORTHO05D008551 1.0e-68 264.2 248 54.0
Solyc12g095820.3 Solanum lycopersicum HOM05D006609 ORTHO05D008551 1.0e-68 264.2 231 58.4
Haze_21897 Corylus avellana HOM05D006609 ORTHO05D008551 1.3e-68 263.8 251 54.6
Aa31LG3G15550 Aethionema arabicum HOM05D006609 ORTHO05D008551 1.1e-67 260.8 248 54.8
AL6G22350 Arabidopsis lyrata HOM05D006609 ORTHO05D008551 1.9e-67 260.0 248 53.6
CARHR201580 Cardamine hirsuta HOM05D006609 ORTHO05D008551 4.3e-67 258.8 248 53.6
Sp6g31980 Schrenkiella parvula HOM05D006609 ORTHO05D008551 5.6e-67 258.5 248 52.0
A02p01130 Brassica napus HOM05D006609 ORTHO05D008551 1.4e-65 253.8 242 53.3
BraA02t05092Z Brassica rapa HOM05D006609 ORTHO05D008551 1.4e-65 253.8 242 53.3
FAN27G2415 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.8e-65 253.4 251 53.0
BcaC03g13384 Brassica carinata HOM05D006609 ORTHO05D008551 5.2e-65 251.9 248 51.6
C02p05310 Brassica napus HOM05D006609 ORTHO05D008551 5.2e-65 251.9 248 51.6
BolC2t06479H Brassica oleracea HOM05D006609 ORTHO05D008551 5.2e-65 251.9 248 51.6
BraA10t44672Z Brassica rapa HOM05D006609 ORTHO05D008551 5.2e-65 251.9 248 51.6
FAN15G1983 Fragaria x ananassa HOM05D006609 ORTHO05D008551 8.9e-65 251.1 251 53.4
CsaV3_3G048520 Cucumis sativus L. HOM05D006609 ORTHO05D008551 1.2e-64 250.8 247 57.9
FAN20G1237 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.5e-64 250.4 251 52.6
BcaC04g19208 Brassica carinata HOM05D006609 ORTHO05D008551 4.4e-64 248.8 248 51.6
BolC9t59347H Brassica oleracea HOM05D006609 ORTHO05D008551 4.4e-64 248.8 248 51.6
Gohir.A05G046200 Gossypium hirsutum HOM05D006609 ORTHO05D008551 4.4e-64 248.8 206 62.6
SGA_v2.0_scaffold243G44286 Striga asiatica HOM05D006609 ORTHO05D008551 4.6e-61 238.8 248 49.2
C09p65180 Brassica napus HOM05D006609 ORTHO05D008551 1.0e-60 237.7 248 51.6
HanXRQChr13g0402211 Helianthus annuus HOM05D006609 ORTHO05D008551 6.6e-60 235.0 189 63.0
Carub.0006s1012 Capsella rubella HOM05D006609 ORTHO05D008551 1.1e-59 234.2 233 51.9
A10p26110 Brassica napus HOM05D006609 ORTHO05D008551 1.5e-59 233.8 274 45.6
Os01g0200400 Oryza sativa ssp. japonica HOM05D006609 ORTHO05D008551 1.5e-59 233.8 246 51.2
Zm00001eb337980 Zea mays HOM05D006609 ORTHO05D008551 1.2e-58 230.7 247 50.6
Nitab4.5_0001737g0100 Nicotiana tabacum HOM05D006609 ORTHO05D008551 1.5e-56 223.8 244 51.2
AT5G11640 Arabidopsis thaliana HOM05D006609 ORTHO05D008551 4.1e-54 215.7 188 56.9
BcaB08g37036 Brassica carinata HOM05D006609 ORTHO05D008551 4.1e-54 215.7 242 48.8
Cpa.g.sc78.16 Carica papaya HOM05D006609 ORTHO05D008551 1.2e-50 204.1 224 50.4
Nitab4.5_0001309g0120 Nicotiana tabacum HOM05D006609 ORTHO05D008551 1.2e-50 204.1 326 41.1
DCAR_000757 Daucus carota HOM05D006609 ORTHO05D010582 1.8e-49 200.3 244 45.9
Prupe.1G447200 Prunus persica HOM05D006609 ORTHO05D008551 3.9e-44 182.6 165 57.6
EL10Ac2g04002 Beta vulgaris HOM05D006609 ORTHO05D008551 1.2e-40 171.0 255 42.7
BcaNung02663 Brassica carinata HOM05D006609 ORTHO05D008551 9.9e-40 167.9 146 56.2
ECA233G1748 Erigeron canadensis HOM05D006609 ORTHO05D008551 2.4e-38 163.3 135 60.7
Lsat_1_v5_gn_5_12101 Lactuca sativa HOM05D006609 ORTHO05D008551 2.4e-33 146.7 139 56.8
vmacro11054 Vaccinium macrocarpon HOM05D006609 ORTHO05D008551 1.2e-32 144.4 109 66.1
unitig_93.g30708 Utricularia gibba HOM05D006609 ORTHO05D008551 1.7e-31 140.6 245 36.7
FAN24G0356 Fragaria x ananassa HOM05D006609 ORTHO05D008551 3.1e-25 119.8 116 53.4
FAN24G3337 Fragaria x ananassa HOM05D006609 ORTHO05D008551 3.1e-25 119.8 116 53.4
HanXRQChr16g0519661 Helianthus annuus HOM05D006609 ORTHO05D008551 6.7e-20 102.1 135 42.2
SEGI_38144 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 8.7e-20 101.7 89 57.3
SMO144G0045 Selaginella moellendorffii HOM05D006609 ORTHO05D008551 3.7e-18 96.3 154 39.0
SEGI_39152 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 6.9e-17 92.0 94 50.0
PRCOL_00006038 Prasinoderma coloniale HOM05D006609 ORTHO05D008551 8.4e-15 85.1 196 27.0
FAN24G1965 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.2e-13 81.3 79 51.9
QL09p008974 Quercus lobata HOM05D006609 ORTHO05D008551 1.0e-12 78.2 71 59.2
Cre10.g426400 Chlamydomonas reinhardtii HOM05D006609 ORTHO05D008551 2.9e-07 60.1 220 21.8


User provided reference genes

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