Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1378.6 698 100.0
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1248.8 686 93.6
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1117.4 688 80.1
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 1.2e-308 1062.8 688 77.6
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 4.4e-308 1060.8 688 77.5
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 5.8e-300 1033.9 690 73.9
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 1.3e-296 1022.7 689 74.7
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 1.3e-270 936.4 690 66.1
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 2.5e-266 922.2 690 65.4
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 3.9e-264 914.8 690 64.6
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 8.7e-264 913.7 689 65.7
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 8.2e-262 907.1 689 64.7
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 6.9e-261 904.0 690 63.8
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 2.0e-260 902.5 549 80.7
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 2.6e-260 902.1 692 64.6
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 7.1e-258 894.0 690 62.5
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 3.0e-256 888.6 689 62.0
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 5.1e-256 887.9 688 61.9
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 1.9e-255 885.9 690 62.5
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 7.4e-255 884.0 688 63.5
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 3.7e-254 881.7 660 63.8
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 6.3e-254 880.9 689 62.3
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 8.2e-254 880.6 690 62.3
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 1.1e-253 880.2 691 63.0
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 5.3e-253 877.9 691 62.1
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 1.5e-252 876.3 689 62.1
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 4.5e-252 874.8 690 61.9
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.0e-251 873.6 689 62.0
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 1.0e-251 873.6 688 60.6
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 2.2e-251 872.5 690 61.4
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 9.4e-250 867.1 689 61.8
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 9.4e-250 867.1 689 61.4
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 7.9e-249 864.0 696 61.5
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.0e-248 863.6 688 61.2
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 1.8e-248 862.8 691 60.2
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 2.3e-248 862.4 658 64.1
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 2.5e-247 859.0 689 61.8
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 3.3e-247 858.6 690 60.3
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 3.3e-247 858.6 690 60.3
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 5.7e-247 857.8 689 61.8
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 9.7e-247 857.1 689 61.7
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 9.7e-247 857.1 690 61.0
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 2.2e-246 855.9 688 59.7
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 2.8e-246 855.5 690 60.4
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 3.7e-246 855.1 688 61.2
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 4.8e-246 854.7 691 60.2
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 6.3e-246 854.4 690 60.4
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 6.3e-246 854.4 690 59.7
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 8.2e-246 854.0 697 61.4
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 8.2e-246 854.0 690 60.4
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 2.4e-245 852.4 688 59.3
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 2.4e-245 852.4 690 60.3
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 2.4e-245 852.4 693 59.3
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 5.3e-245 851.3 690 60.3
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 6.9e-245 850.9 690 60.3
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 9.1e-245 850.5 686 60.1
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 1.2e-244 850.1 690 60.4
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.5e-244 849.7 689 61.4
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 4.5e-244 848.2 690 60.0
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 1.3e-243 846.7 689 59.2
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 3.8e-243 845.1 688 61.3
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 6.5e-243 844.3 690 59.6
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 1.9e-242 842.8 690 59.4
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 1.2e-241 840.1 690 59.1
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 1.6e-241 839.7 688 58.9
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 2.1e-241 839.3 691 60.8
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 2.7e-241 839.0 690 58.7
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 3.6e-241 838.6 691 60.6
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 6.1e-241 837.8 690 59.0
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 1.0e-240 837.0 688 58.6
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 1.4e-240 836.6 688 58.7
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 2.3e-240 835.9 693 58.6
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 8.8e-240 833.9 690 59.0
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.5e-239 833.2 688 60.8
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 9.7e-239 830.5 688 58.6
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 1.7e-238 829.7 688 59.4
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 2.8e-238 828.9 713 58.1
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 4.8e-238 828.2 690 59.1
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 4.8e-238 828.2 689 58.2
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 6.3e-238 827.8 713 56.9
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 8.2e-238 827.4 691 58.8
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 8.2e-238 827.4 691 59.5
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 1.1e-237 827.0 645 63.1
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 1.4e-237 826.6 689 60.4
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 7.7e-236 820.8 688 59.4
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 1.7e-235 819.7 708 56.6
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 3.8e-235 818.5 690 58.1
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 5.0e-235 818.1 689 58.5
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 1.9e-234 816.2 694 58.2
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 3.2e-234 815.5 689 58.1
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 4.2e-234 815.1 690 57.8
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 4.2e-234 815.1 690 57.7
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 1.6e-233 813.1 766 53.7
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 4.7e-233 811.6 690 57.4
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 4.7e-233 811.6 693 58.2
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 6.1e-233 811.2 691 57.5
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 2.3e-232 809.3 688 57.0
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 1.1e-231 807.0 691 57.2
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 1.1e-231 807.0 691 57.6
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 2.0e-231 806.2 688 57.3
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 4.4e-231 805.1 703 57.0
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 1.3e-230 803.5 712 55.9
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 1.7e-230 803.1 710 56.1
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 1.7e-230 803.1 692 57.5
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 3.7e-230 802.0 688 56.8
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 4.8e-230 801.6 705 56.2
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 2.4e-229 799.3 691 57.0
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 2.4e-229 799.3 691 56.7
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 3.1e-229 798.9 691 58.2
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 3.1e-229 798.9 690 58.0
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 1.2e-228 797.0 688 56.5
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 1.6e-228 796.6 691 56.4
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 4.5e-228 795.0 660 58.2
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 1.0e-227 793.9 657 59.4
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 5.0e-227 791.6 689 56.3
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 1.1e-226 790.4 717 55.2
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 8.8e-224 780.8 681 54.6
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 1.0e-219 767.3 685 54.9
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 7.2e-218 761.1 685 55.0
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 5.7e-215 751.5 679 53.9
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 3.5e-212 742.3 679 53.8
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 7.7e-212 741.1 656 56.6
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 6.6e-203 711.4 672 54.3
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 2.9e-198 696.0 688 51.6
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 7.6e-183 644.8 551 55.7
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 4.4e-175 619.0 600 51.2
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 1.1e-173 614.4 656 47.6
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 6.9e-160 568.5 682 44.6
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 9.0e-160 568.2 512 53.5
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 1.0e-155 554.7 694 41.9
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.3e-142 511.1 420 61.2
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 1.3e-137 494.6 694 39.3
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 1.3e-126 458.0 657 40.2
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 4.7e-124 449.5 578 45.7
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 5.5e-109 399.4 256 75.0
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 3.4e-98 363.6 334 55.4
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.7e-95 354.0 246 64.6
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.2e-90 338.6 232 76.3
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 4.1e-88 330.1 721 31.8
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 4.1e-80 303.5 686 31.3
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 7.8e-79 299.3 380 42.6
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 4.3e-77 293.5 319 48.0
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 3.5e-71 273.9 360 40.8
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 2.3e-70 271.2 450 38.9
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.3e-67 261.2 256 50.4
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 3.1e-59 234.2 267 45.3
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 5.3e-43 180.3 711 27.8
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 1.2e-39 169.1 721 24.5
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 1.2e-34 152.5 104 67.3
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 2.6e-34 151.4 104 67.3
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 2.6e-34 151.4 104 67.3
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 1.9e-21 108.6 288 32.3
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 2.2e-20 105.1 81 56.8
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 2.8e-20 104.8 62 82.3
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 1.0e-17 96.3 70 67.1
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 7.9e-15 86.7 72 61.1
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 1.0e-14 86.3 122 42.6
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.0e-14 86.3 67 55.2
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 1.3e-12 79.3 47 72.3
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 1.7e-12 79.0 140 35.0
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 3.4e-10 71.2 37 97.3


User provided reference genes

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