Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 8.9e-276 953.0 477 100.0
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 4.6e-248 860.9 530 83.2
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 2.2e-234 815.5 557 78.8
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 3.2e-233 811.6 530 77.9
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 3.2e-233 811.6 530 77.2
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 7.1e-233 810.4 530 77.0
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 3.0e-231 805.1 530 76.4
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 7.6e-227 790.4 530 76.2
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 6.9e-220 767.3 530 71.3
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 3.0e-215 751.9 530 70.0
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 3.9e-215 751.5 528 70.1
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 5.1e-215 751.1 530 70.0
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 5.1e-215 751.1 530 69.8
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 1.5e-214 749.6 529 70.5
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 1.5e-214 749.6 528 69.9
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 3.3e-214 748.4 530 70.2
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 3.3e-214 748.4 530 70.2
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 5.7e-214 747.7 530 69.8
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 7.4e-214 747.3 530 70.0
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 1.6e-213 746.1 530 69.6
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 2.1e-213 745.7 530 69.8
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 2.1e-213 745.7 530 69.8
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 2.8e-213 745.3 529 71.8
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 2.8e-213 745.3 530 70.6
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 3.7e-213 745.0 530 69.4
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 3.7e-213 745.0 530 69.6
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 3.7e-213 745.0 530 69.6
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 2.4e-212 742.3 530 69.8
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 2.4e-212 742.3 530 68.5
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 2.4e-212 742.3 528 68.8
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 4.1e-212 741.5 528 68.8
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 5.3e-212 741.1 530 69.8
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 5.3e-212 741.1 529 69.9
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 6.9e-212 740.7 530 68.7
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 9.0e-212 740.3 527 70.8
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.5e-211 739.6 530 68.5
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 1.5e-211 739.6 530 68.9
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 1.5e-211 739.6 530 68.9
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 4.5e-211 738.0 530 68.5
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 5.9e-211 737.6 529 67.9
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 5.9e-211 737.6 530 68.5
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 1.0e-210 736.9 529 69.0
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 1.3e-210 736.5 530 69.1
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 2.9e-210 735.3 530 68.3
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 3.8e-210 734.9 530 68.1
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 5.0e-210 734.6 530 69.2
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 8.4e-210 733.8 530 68.7
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 8.4e-210 733.8 530 68.3
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 8.4e-210 733.8 530 68.3
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 1.1e-209 733.4 530 68.5
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 1.4e-209 733.0 529 67.9
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 3.2e-209 731.9 530 67.7
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 5.5e-209 731.1 530 68.3
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 5.5e-209 731.1 530 68.3
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 7.2e-209 730.7 529 68.4
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 7.2e-209 730.7 530 68.7
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 3.5e-208 728.4 530 67.2
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 1.0e-207 726.9 528 68.0
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 1.3e-207 726.5 530 67.2
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 3.0e-207 725.3 530 67.2
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 3.9e-207 724.9 530 67.9
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 5.1e-207 724.5 530 67.5
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 1.5e-206 723.0 530 67.4
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 5.7e-206 721.1 528 67.4
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 5.7e-206 721.1 530 67.7
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 5.7e-206 721.1 530 67.4
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 7.4e-206 720.7 530 66.6
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 1.6e-205 719.5 527 67.6
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.6e-205 719.5 530 67.5
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 1.4e-204 716.5 530 66.4
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 3.1e-204 715.3 530 66.4
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 4.1e-204 714.9 530 66.6
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 4.1e-204 714.9 530 66.6
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 5.3e-204 714.5 528 66.3
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 5.3e-204 714.5 530 67.0
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 5.3e-204 714.5 530 66.6
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.2e-203 713.4 530 67.2
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 1.2e-203 713.4 530 66.4
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 1.5e-203 713.0 530 65.3
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 3.4e-203 711.8 528 65.9
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 4.5e-203 711.4 531 66.1
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 4.5e-203 711.4 530 64.9
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 4.5e-203 711.4 529 67.7
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 5.9e-203 711.1 526 66.0
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 5.9e-203 711.1 526 66.0
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 7.7e-203 710.7 530 64.7
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 1.0e-202 710.3 526 65.6
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 1.3e-202 709.9 529 66.0
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 1.7e-202 709.5 530 67.0
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 2.2e-202 709.1 530 64.9
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 3.8e-202 708.4 530 65.1
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 6.5e-202 707.6 527 65.8
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 6.5e-202 707.6 527 65.8
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 1.1e-201 706.8 528 64.8
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 1.4e-201 706.4 530 66.8
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 1.4e-201 706.4 530 65.7
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 1.9e-201 706.1 530 64.5
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 2.5e-201 705.7 531 67.4
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 5.5e-201 704.5 530 65.7
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 5.5e-201 704.5 528 66.1
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 5.5e-201 704.5 527 65.7
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 1.6e-200 703.0 530 64.3
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 2.1e-200 702.6 543 65.0
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 3.6e-200 701.8 530 64.3
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 3.6e-200 701.8 528 64.2
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 7.9e-200 700.7 559 63.5
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 1.4e-199 699.9 534 65.4
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 1.8e-199 699.5 528 66.7
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 2.3e-199 699.1 530 64.2
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 5.1e-199 698.0 534 64.6
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 2.0e-198 696.0 530 65.3
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 1.3e-197 693.3 530 64.2
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 1.7e-197 693.0 604 59.6
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 3.7e-197 691.8 530 64.0
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 6.3e-197 691.0 530 63.8
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 1.2e-195 686.8 530 64.3
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 1.5e-195 686.4 516 66.3
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 1.5e-195 686.4 516 66.3
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 2.7e-192 675.6 489 68.9
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 1.4e-191 673.3 530 63.8
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 2.0e-190 669.5 529 62.8
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 3.3e-190 668.7 531 62.7
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 2.6e-187 659.1 530 61.9
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 5.0e-186 654.8 530 62.5
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 4.0e-175 618.6 505 62.2
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 2.3e-167 592.8 530 57.4
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 4.4e-166 588.6 532 55.8
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 7.0e-164 581.3 362 76.8
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.0e-159 567.4 443 63.7
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 5.4e-156 555.1 532 52.4
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 2.0e-150 536.6 521 51.8
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 2.2e-141 506.5 296 83.4
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 1.3e-138 497.3 296 80.7
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 2.2e-133 479.9 282 82.3
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 4.8e-104 382.5 424 45.8
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 5.1e-98 362.5 437 46.7
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.0e-90 338.2 232 76.3
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 4.7e-75 286.2 410 40.7
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 3.0e-74 283.5 302 51.3
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 3.9e-74 283.1 548 35.6
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 4.4e-73 279.6 524 36.5
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 8.2e-64 248.8 369 42.8
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 3.5e-62 243.4 236 53.0
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 1.4e-55 221.5 147 79.6
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 1.2e-54 218.4 236 47.9
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-52 211.5 349 35.2
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 3.2e-52 210.3 184 57.1
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 4.0e-50 203.4 129 76.0
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 5.7e-49 199.5 125 77.6
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 7.5e-49 199.1 139 67.6
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 1.1e-44 185.3 105 81.9
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 5.6e-44 183.0 125 73.6
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 2.5e-36 157.5 200 48.5
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 3.6e-35 153.7 469 27.1
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 2.6e-33 147.5 162 50.6
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 8.3e-32 142.5 85 84.7
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 6.6e-21 106.3 149 47.7
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 8.6e-21 105.9 121 53.7
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 3.3e-20 104.0 81 56.8
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 3.3e-20 104.0 82 59.8
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 7.3e-20 102.8 63 71.4
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 1.6e-19 101.7 60 83.3
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 4.0e-18 97.1 109 51.4
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 8.9e-18 95.9 109 51.4
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 6.4e-16 89.7 53 73.6
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 4.6e-14 83.6 65 66.2


User provided reference genes

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