Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1862.4 945 100.0
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1503.8 1013 76.3
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1437.2 1013 73.8
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1435.6 1013 73.7
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1414.4 1015 71.6
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1386.3 1013 71.3
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1311.6 874 77.3
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1304.7 1014 66.1
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1293.1 1015 65.1
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1285.4 1014 65.4
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1274.2 1014 64.1
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1273.8 1015 63.9
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1273.5 1015 64.3
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1271.9 1017 64.4
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1261.5 1017 63.5
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1258.8 983 64.3
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1257.3 1015 63.3
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1256.5 1013 62.9
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1256.1 1013 62.8
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1253.4 1014 61.8
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1253.4 1014 62.9
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1250.3 1013 63.2
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1250.0 686 93.6
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1250.0 1016 62.9
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1248.4 1014 62.8
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1240.3 1016 62.6
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1239.6 1015 62.2
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1238.4 1015 61.7
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1236.9 1015 61.8
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1234.9 1015 61.8
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1233.8 1011 62.8
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1233.8 1016 62.4
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1232.2 1022 62.4
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1231.5 1011 62.7
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1228.4 1014 61.8
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1227.6 1014 62.6
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1224.5 1013 61.0
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1223.8 1011 62.5
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1223.0 1017 61.2
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1222.2 1013 61.1
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1219.9 1013 61.0
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1219.5 1017 61.0
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1217.6 1016 61.3
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1216.4 1016 61.3
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1214.9 1013 61.0
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1214.1 1015 61.0
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1212.2 1016 61.3
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1212.2 1017 60.8
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1210.7 1016 61.1
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1210.3 1016 61.1
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1208.7 1015 61.1
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1208.4 1018 60.5
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1208.0 1011 61.0
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1207.2 1013 60.8
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1206.4 1015 60.0
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1202.6 1014 60.9
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1199.9 1013 61.3
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1198.7 1034 60.4
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1198.0 1017 60.6
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1194.9 1015 60.3
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1193.7 1017 59.9
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1193.3 1014 59.7
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1192.9 1015 59.6
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1191.4 1015 60.4
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1189.9 1013 59.7
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1189.5 1013 59.9
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1187.2 1015 60.1
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1184.9 1015 59.6
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1184.1 1013 59.7
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1184.1 1014 58.9
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1183.3 1012 59.5
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1182.9 1013 59.2
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1182.9 1015 59.6
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1182.9 1016 60.2
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1182.2 1014 59.2
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1182.2 1016 60.1
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1180.2 1014 59.3
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1179.9 1014 58.8
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1179.5 1012 60.3
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1178.7 1012 59.5
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1172.1 1113 56.0
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1171.4 1013 58.7
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1170.2 1014 58.5
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1169.8 1013 58.5
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1168.7 1014 58.4
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1168.7 1022 59.3
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1167.5 1021 59.5
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1167.5 1038 57.6
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1164.4 1014 58.3
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1164.1 1015 58.2
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1164.1 1016 58.8
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1161.7 1036 58.0
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1161.0 1110 55.5
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1161.0 1014 59.0
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1160.2 1012 57.9
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1159.8 1015 58.0
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1159.8 1027 57.8
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1158.7 1016 58.5
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1156.7 1034 57.3
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1155.6 1014 58.7
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1154.8 1012 57.7
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1152.5 1016 59.3
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1150.2 1012 57.5
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1150.2 981 59.6
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1149.8 1022 58.0
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1149.8 1019 58.0
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1147.5 1016 57.3
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1147.1 982 58.9
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1146.0 985 59.4
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1146.0 1016 57.3
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1142.9 1041 56.7
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1137.5 1012 57.1
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1125.9 1006 56.2
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1124.0 1025 56.5
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1120.9 929 62.1
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1119.4 1010 56.9
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1096.6 1013 55.6
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1080.5 1019 55.4
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1078.2 974 57.8
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 6.5e-312 1074.7 999 55.4
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 3.1e-304 1048.5 1012 54.8
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 3.1e-304 1048.5 926 59.0
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 1.2e-287 993.4 876 58.1
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 1.4e-280 969.9 981 51.6
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 4.3e-274 948.3 911 54.4
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 1.2e-260 903.7 837 55.1
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 4.2e-253 878.6 1008 47.5
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 1.2e-244 850.5 1017 44.5
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 1.2e-236 823.9 658 62.6
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 2.6e-234 816.2 557 78.8
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.2e-218 764.2 570 65.8
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 4.1e-216 755.7 624 59.8
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 2.9e-214 749.6 981 43.7
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 5.8e-178 629.0 866 40.4
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 1.1e-152 545.0 877 39.1
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.0e-150 538.5 785 43.1
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 3.6e-135 486.9 391 63.7
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 9.4e-128 462.2 420 57.4
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 4.2e-112 410.2 325 66.5
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 6.8e-110 402.9 325 64.3
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.7e-108 398.3 256 75.0
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-106 392.1 818 32.0
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 3.8e-105 387.1 311 65.6
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 8.6e-97 359.4 434 49.8
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 2.3e-89 334.7 1035 29.4
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 6.6e-89 333.2 1066 27.6
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.2e-87 328.9 334 52.4
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 6.8e-70 270.0 362 42.3
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 7.6e-61 240.0 319 42.3
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 2.4e-59 235.0 446 35.4
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 3.0e-57 228.0 360 37.8
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 3.1e-54 218.0 256 46.1
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 6.0e-50 203.8 176 65.9
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 2.5e-48 198.4 128 75.0
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 5.6e-48 197.2 125 76.8
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 2.8e-47 194.9 245 45.3
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 1.4e-46 192.6 213 48.8
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 7.1e-43 180.3 125 72.8
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 4.3e-40 171.0 113 69.9
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 1.1e-35 156.4 1033 22.0
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 5.5e-35 154.1 104 68.3
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 1.2e-34 152.9 104 68.3
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 1.2e-34 152.9 104 68.3
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 3.3e-32 144.8 110 67.3
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 1.4e-30 139.4 85 82.4
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 6.5e-28 130.6 83 74.7
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 5.0e-20 104.4 81 56.8
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 8.5e-20 103.6 62 80.6
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 1.1e-19 103.2 60 85.0
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 2.1e-18 99.0 109 52.3
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 4.7e-18 97.8 109 52.3
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 6.1e-18 97.4 70 68.6
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 5.1e-17 94.4 178 39.9
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 1.1e-16 93.2 150 43.3
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 2.2e-15 89.0 72 62.5
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 1.1e-14 86.7 53 69.8
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 1.4e-14 86.3 122 42.6
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 1.8e-14 85.9 184 33.2
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 5.9e-13 80.9 140 35.7
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 1.7e-12 79.3 47 72.3
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 2.7e-10 72.0 52 59.6
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 4.7e-10 71.2 37 97.3


User provided reference genes

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