Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g104980 Amaranthus hybridus HOM05D003659 ORTHO05D004298 4.2e-116 421.4 215 100.0
MD15G1038400 Malus domestica HOM05D003659 ORTHO05D004298 3.1e-79 298.9 199 70.9
Glyma.06G062900 Glycine max HOM05D003659 ORTHO05D004298 5.3e-79 298.1 196 69.4
FAN27G2887 Fragaria x ananassa HOM05D003659 ORTHO05D004298 1.2e-78 297.0 186 73.7
FAN20G3050 Fragaria x ananassa HOM05D003659 ORTHO05D004298 1.6e-78 296.6 185 74.1
Prupe.1G392400 Prunus persica HOM05D003659 ORTHO05D004298 4.5e-78 295.0 189 72.5
QL02p019557 Quercus lobata HOM05D003659 ORTHO05D004298 5.9e-78 294.7 195 71.3
FvH4_2g40990 Fragaria vesca HOM05D003659 ORTHO05D004298 1.0e-77 293.9 185 73.5
Glyma.04G061900 Glycine max HOM05D003659 ORTHO05D004298 1.3e-77 293.5 183 72.1
RcHm_v2.0_Chr6g0299581 Rosa chinensis HOM05D003659 ORTHO05D004298 1.7e-77 293.1 185 71.9
TWI34G1103 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 2.2e-77 292.7 197 69.0
Ciclev10009450m.g Citrus clementina HOM05D003659 ORTHO05D004298 2.9e-77 292.4 185 73.0
TWI32G0040 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 2.9e-77 292.4 197 69.0
PSO170G6877 Papaver somniferum HOM05D003659 ORTHO05D004298 3.8e-77 292.0 197 68.5
ClCG05G016430 Citrullus lanatus HOM05D003659 ORTHO05D004298 5.0e-77 291.6 194 70.6
Nn2g12325 Nelumbo nucifera HOM05D003659 ORTHO05D004298 5.0e-77 291.6 193 71.0
PSO017G1057 Papaver somniferum HOM05D003659 ORTHO05D004298 5.0e-77 291.6 197 68.0
Lj9A494G39 Lonicera japonica HOM05D003659 ORTHO05D004298 6.5e-77 291.2 192 69.8
arahy.Tifrunner.gnm1.ann1.48QDBJ Arachis hypogaea HOM05D003659 ORTHO05D004298 8.5e-77 290.8 183 73.2
PGR044G1948 Punica granatum HOM05D003659 ORTHO05D004298 8.5e-77 290.8 189 71.4
THA.LOC104803632 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 8.5e-77 290.8 198 67.7
Atru.chr7.2534 Acer truncatum HOM05D003659 ORTHO05D004298 1.5e-76 290.0 213 63.8
Cfa013072 Carpinus fangiana HOM05D003659 ORTHO05D004298 1.5e-76 290.0 193 68.9
CsaV3_4G036690 Cucumis sativus L. HOM05D003659 ORTHO05D004298 1.5e-76 290.0 192 69.8
Lalb_Chr23g0268261 Lupinus albus HOM05D003659 ORTHO05D004298 1.5e-76 290.0 197 69.5
MD08G1057800 Malus domestica HOM05D003659 ORTHO05D004298 1.5e-76 290.0 181 73.5
GSVIVG01035892001 Vitis vinifera HOM05D003659 ORTHO05D004298 1.5e-76 290.0 193 69.9
arahy.Tifrunner.gnm1.ann1.85LDPV Arachis hypogaea HOM05D003659 ORTHO05D004298 1.9e-76 289.7 183 72.7
MELO3C016972.2 Cucumis melo HOM05D003659 ORTHO05D004298 1.9e-76 289.7 185 71.9
Gohir.D07G035300 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.9e-76 289.7 184 71.7
Gohir.A07G031500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 2.5e-76 289.3 184 72.3
Manes.03G010100 Manihot esculenta HOM05D003659 ORTHO05D004298 2.5e-76 289.3 213 64.3
Gorai.001G037100 Gossypium raimondii HOM05D003659 ORTHO05D004298 4.2e-76 288.5 184 71.2
CiPaw.08G006800 Carya illinoinensis HOM05D003659 ORTHO05D004298 5.5e-76 288.1 193 68.4
Psat5g032160 Pisum sativum HOM05D003659 ORTHO05D004298 7.2e-76 287.7 183 71.6
Oeu027829.1 Olea europaea HOM05D003659 ORTHO05D004298 1.6e-75 286.6 199 67.8
GSVIVG01034217001 Vitis vinifera HOM05D003659 ORTHO05D004298 1.6e-75 286.6 193 69.4
Manes.16G128300 Manihot esculenta HOM05D003659 ORTHO05D004298 2.7e-75 285.8 196 67.3
Hund06525 Selenicereus undatus HOM05D003659 ORTHO05D004298 3.6e-75 285.4 209 65.1
BolC8t51458H Brassica oleracea HOM05D003659 ORTHO05D004298 4.7e-75 285.0 193 67.4
Sed0006058 Sechium edule HOM05D003659 ORTHO05D004298 4.7e-75 285.0 189 69.3
Lj1g0004529 Lotus japonicus HOM05D003659 ORTHO05D004298 6.1e-75 284.6 183 70.5
Actinidia08946 Actinidia chinensis HOM05D003659 ORTHO05D004298 8.0e-75 284.3 199 66.3
Cc04_g05030 Coffea canephora HOM05D003659 ORTHO05D004298 8.0e-75 284.3 199 66.8
Duzib168G1659 Durio zibethinus HOM05D003659 ORTHO05D004298 8.0e-75 284.3 184 69.6
PGSC0003DMG400014120 Solanum tuberosum HOM05D003659 ORTHO05D004298 8.0e-75 284.3 199 67.3
AT2G25110 Arabidopsis thaliana HOM05D003659 ORTHO05D004298 1.0e-74 283.9 216 63.0
MSTRG.9405 Avicennia marina HOM05D003659 ORTHO05D004298 1.0e-74 283.9 199 66.8
Cpa.g.sc127.19 Carica papaya HOM05D003659 ORTHO05D004298 1.0e-74 283.9 186 69.4
Thhalv10000317m.g Eutrema salsugineum HOM05D003659 ORTHO05D004298 1.4e-74 283.5 193 67.4
Peaxi162Scf00332g00435 Petunia axillaris HOM05D003659 ORTHO05D004298 1.4e-74 283.5 199 66.3
Phvul.009G088100 Phaseolus vulgaris HOM05D003659 ORTHO05D004298 1.4e-74 283.5 180 72.2
Sabra06G0205400 Salix brachista HOM05D003659 ORTHO05D004298 1.4e-74 283.5 213 63.4
CARHR116580 Cardamine hirsuta HOM05D003659 ORTHO05D004298 1.8e-74 283.1 216 62.0
Migut.D01114 Erythranthe guttata HOM05D003659 ORTHO05D004298 1.8e-74 283.1 199 67.3
ATR0739G101 Amborella trichopoda HOM05D003659 ORTHO05D004298 2.3e-74 282.7 186 69.9
Dinv23291 Davidia involucrata HOM05D003659 ORTHO05D004298 2.3e-74 282.7 191 69.1
Oeu060128.1 Olea europaea HOM05D003659 ORTHO05D004298 2.3e-74 282.7 199 65.8
Solyc03g117020.4 Solanum lycopersicum HOM05D003659 ORTHO05D004298 2.3e-74 282.7 192 69.3
Sopen03g035920 Solanum pennellii HOM05D003659 ORTHO05D004298 2.3e-74 282.7 192 69.3
AL4G16270 Arabidopsis lyrata HOM05D003659 ORTHO05D004298 3.0e-74 282.3 216 62.5
Nn8g39829 Nelumbo nucifera HOM05D003659 ORTHO05D004298 3.0e-74 282.3 194 69.1
Thecc.09G017100 Theobroma cacao HOM05D003659 ORTHO05D004298 3.0e-74 282.3 185 69.2
Lsat_1_v5_gn_5_8201 Lactuca sativa HOM05D003659 ORTHO05D004298 4.0e-74 282.0 195 67.2
Duzib150G0849 Durio zibethinus HOM05D003659 ORTHO05D004298 5.2e-74 281.6 182 71.4
CAN.G407.57 Capsicum annuum HOM05D003659 ORTHO05D004298 6.8e-74 281.2 199 66.8
DCAR_025575 Daucus carota HOM05D003659 ORTHO05D004298 6.8e-74 281.2 189 69.3
Potri.018G020700 Populus trichocarpa HOM05D003659 ORTHO05D004298 6.8e-74 281.2 182 69.8
BcaB06g28036 Brassica carinata HOM05D003659 ORTHO05D004298 8.8e-74 280.8 217 61.8
A09p55870 Brassica napus HOM05D003659 ORTHO05D004298 8.8e-74 280.8 187 68.4
BraA09t40990Z Brassica rapa HOM05D003659 ORTHO05D004298 8.8e-74 280.8 187 68.4
ECA246G1998 Erigeron canadensis HOM05D003659 ORTHO05D004298 8.8e-74 280.8 188 69.7
MSTRG.22794 Avicennia marina HOM05D003659 ORTHO05D004298 1.2e-73 280.4 213 62.0
A04p19520 Brassica napus HOM05D003659 ORTHO05D004298 1.2e-73 280.4 216 62.5
BraA04t17546Z Brassica rapa HOM05D003659 ORTHO05D004298 1.2e-73 280.4 216 62.5
Lsat_1_v5_gn_1_32141 Lactuca sativa HOM05D003659 ORTHO05D004298 1.2e-73 280.4 195 66.7
Potri.006G263200 Populus trichocarpa HOM05D003659 ORTHO05D004298 1.2e-73 280.4 213 62.0
Sp4g04120 Schrenkiella parvula HOM05D003659 ORTHO05D004298 1.2e-73 280.4 195 65.6
Lj5A80T55 Lonicera japonica HOM05D003659 ORTHO05D004298 1.5e-73 280.0 184 69.6
Aa31LG7G12130 Aethionema arabicum HOM05D003659 ORTHO05D004298 2.0e-73 279.6 215 62.8
BcaC07g40890 Brassica carinata HOM05D003659 ORTHO05D004298 2.0e-73 279.6 184 69.0
C08p38860 Brassica napus HOM05D003659 ORTHO05D004298 2.0e-73 279.6 184 69.0
Gorai.009G061600 Gossypium raimondii HOM05D003659 ORTHO05D004298 2.0e-73 279.6 184 67.9
Medtr3g106130 Medicago truncatula HOM05D003659 ORTHO05D004298 2.0e-73 279.6 203 66.5
Carub.0004s0471 Capsella rubella HOM05D003659 ORTHO05D004298 2.6e-73 279.3 216 62.0
Hund00440 Selenicereus undatus HOM05D003659 ORTHO05D004298 2.6e-73 279.3 200 67.5
Aqoxy7G01595 Aquilegia oxysepala HOM05D003659 ORTHO05D004298 3.4e-73 278.9 189 68.8
CSS0004565 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 3.4e-73 278.9 185 69.7
CSS0014874 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 3.4e-73 278.9 185 69.7
Eucgr.C02663 Eucalyptus grandis HOM05D003659 ORTHO05D004298 3.4e-73 278.9 192 66.1
Gohir.D05G060500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 3.4e-73 278.9 183 68.3
Lalb_Chr08g0244391 Lupinus albus HOM05D003659 ORTHO05D004298 3.4e-73 278.9 183 69.9
TAR625G1087 Trochodendron aralioides HOM05D003659 ORTHO05D004298 3.4e-73 278.9 185 70.3
TAR625G1310 Trochodendron aralioides HOM05D003659 ORTHO05D004298 3.4e-73 278.9 185 70.3
C04p55110 Brassica napus HOM05D003659 ORTHO05D004298 5.7e-73 278.1 216 62.0
BolC4t27050H Brassica oleracea HOM05D003659 ORTHO05D004298 5.7e-73 278.1 216 62.0
MSTRG.11175 Avicennia marina HOM05D003659 ORTHO05D004298 7.5e-73 277.7 210 61.9
Actinidia18243 Actinidia chinensis HOM05D003659 ORTHO05D004298 9.8e-73 277.3 188 68.1
Actinidia25461 Actinidia chinensis HOM05D003659 ORTHO05D004298 9.8e-73 277.3 188 68.6
HanXRQChr04g0098481 Helianthus annuus HOM05D003659 ORTHO05D004298 9.8e-73 277.3 195 66.7
BcaC02g08370 Brassica carinata HOM05D003659 ORTHO05D004298 1.3e-72 276.9 216 61.6
Gohir.A05G058400 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.3e-72 276.9 184 66.8
unitig_61.g26227 Utricularia gibba HOM05D003659 ORTHO05D004298 1.3e-72 276.9 199 65.8
Rhsim12G0187700 Rhododendron simsii HOM05D003659 ORTHO05D004298 1.7e-72 276.6 214 62.1
ECA247G2368 Erigeron canadensis HOM05D003659 ORTHO05D004298 2.8e-72 275.8 189 67.7
CSS0027457 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 3.7e-72 275.4 192 66.1
CSS0033149 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 3.7e-72 275.4 192 66.1
vmacro19047 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 3.7e-72 275.4 213 61.5
CDE05G0949 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 6.3e-72 274.6 182 70.3
AUR62030831 Chenopodium quinoa HOM05D003659 ORTHO05D004298 6.3e-72 274.6 190 67.9
Os08g0440500 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 6.3e-72 274.6 192 66.7
Sed0005308 Sechium edule HOM05D003659 ORTHO05D004298 8.3e-72 274.2 182 69.2
EL10Ac9g22216 Beta vulgaris HOM05D003659 ORTHO05D004298 1.1e-71 273.9 190 67.9
SHI18485 Sapria himalayana HOM05D003659 ORTHO05D004298 1.1e-71 273.9 193 67.4
Rhsim08G0207200 Rhododendron simsii HOM05D003659 ORTHO05D004298 1.8e-71 273.1 199 64.3
vmacro16858 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 1.8e-71 273.1 195 65.1
Migut.I00701 Erythranthe guttata HOM05D003659 ORTHO05D004298 2.4e-71 272.7 195 64.6
Os08g0278900 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 2.4e-71 272.7 192 64.1
HPP92_004679 Vanilla planifolia HOM05D003659 ORTHO05D004298 2.4e-71 272.7 213 61.0
HanXRQChr08g0235851 Helianthus annuus HOM05D003659 ORTHO05D004298 3.1e-71 272.3 198 64.1
Nitab4.5_0001454g0190 Nicotiana tabacum HOM05D003659 ORTHO05D004298 4.1e-71 271.9 208 63.0
Zm00001eb041170 Zea mays HOM05D003659 ORTHO05D004298 4.1e-71 271.9 184 67.4
Zm00001eb179820 Zea mays HOM05D003659 ORTHO05D004298 7.0e-71 271.2 184 66.8
AUR62026991 Chenopodium quinoa HOM05D003659 ORTHO05D004298 1.2e-70 270.4 188 66.5
DCAR_021366 Daucus carota HOM05D003659 ORTHO05D004298 4.5e-70 268.5 189 65.6
SGA_v2.0_scaffold5G02776 Striga asiatica HOM05D003659 ORTHO05D004298 4.5e-70 268.5 196 65.8
COL.COLO4_03628 Corchorus olitorius HOM05D003659 ORTHO05D004298 7.7e-70 267.7 175 69.1
HanXRQChr05g0153781 Helianthus annuus HOM05D003659 ORTHO05D004298 1.0e-69 267.3 193 63.2
Haze_21430 Corylus avellana HOM05D003659 ORTHO05D004298 2.9e-69 265.8 243 54.3
SEGI_01700 Sequoiadendron giganteum HOM05D003659 ORTHO05D004298 1.9e-68 263.1 177 69.5
arahy.Tifrunner.gnm1.ann1.7GH63I Arachis hypogaea HOM05D003659 ORTHO05D004298 4.2e-68 261.9 199 61.8
SalBow7G4756 Salvia bowleyana HOM05D003659 ORTHO05D004298 5.5e-68 261.5 171 70.2
arahy.Tifrunner.gnm1.ann1.Q7FMUW Arachis hypogaea HOM05D003659 ORTHO05D004298 1.2e-67 260.4 199 61.3
Oeu004335.5 Olea europaea HOM05D003659 ORTHO05D004298 2.7e-67 259.2 234 55.6
Ah.01g006880 Amaranthus hybridus HOM05D003659 ORTHO05D004298 3.6e-67 258.8 227 57.7
CDE02G2060 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 3.6e-67 258.8 171 70.2
unitig_0.g1106 Utricularia gibba HOM05D003659 ORTHO05D004298 4.7e-67 258.5 227 57.7
Mapoly0146s0027 Marchantia polymorpha HOM05D003659 ORTHO05D004298 8.0e-67 257.7 187 62.6
AUR62012468 Chenopodium quinoa HOM05D003659 ORTHO05D004298 1.4e-66 256.9 213 62.9
Sc12g0008380 Simmondsia chinensis HOM05D003659 ORTHO05D004298 1.7e-64 250.0 168 71.4
Pp3c4_7140 Physcomitrium patens HOM05D003659 ORTHO05D004298 6.3e-64 248.1 191 59.2
Pp3c12_21450 Physcomitrium patens HOM05D003659 ORTHO05D004298 2.0e-62 243.0 194 60.3
Lsat_1_v5_gn_4_87041 Lactuca sativa HOM05D003659 ORTHO05D004298 2.5e-60 236.1 186 61.8
SMO340G0294 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 5.6e-60 235.0 179 59.2
CBR_g38858 Chara braunii HOM05D003659 ORTHO05D004298 2.8e-59 232.6 189 57.7
SMO304G0007 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 3.6e-59 232.3 177 61.6
HPP92_010392 Vanilla planifolia HOM05D003659 ORTHO05D004298 1.5e-57 226.9 159 64.2
Pp3c9_3320 Physcomitrium patens HOM05D003659 ORTHO05D004298 2.4e-55 219.5 192 54.2
AUR62031594 Chenopodium quinoa HOM05D003659 ORTHO05D004298 3.5e-54 215.7 182 60.4
TPR.G3109 Trifolium pratense HOM05D003659 ORTHO05D004298 2.3e-50 203.0 187 56.7
Cre13.g571750 Chlamydomonas reinhardtii HOM05D003659 ORTHO05D004298 1.1e-47 194.1 196 48.0
MCO11G512 Micromonas commoda HOM05D003659 ORTHO05D004298 1.4e-47 193.7 187 49.2
TAR636G3496 Trochodendron aralioides HOM05D003659 ORTHO05D004298 1.6e-46 190.3 217 50.7
PRCOL_00006403 Prasinoderma coloniale HOM05D003659 ORTHO05D004298 3.4e-41 172.6 176 46.0
Dinv21405 Davidia involucrata HOM05D003659 ORTHO05D004298 2.7e-38 162.9 122 58.2
Nitab4.5_0026787g0010 Nicotiana tabacum HOM05D003659 ORTHO05D004298 1.5e-36 157.1 114 66.7
THA.LOC104804845 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 5.6e-36 155.2 110 64.5
EL10Ac2g04128 Beta vulgaris HOM05D003659 ORTHO05D004298 7.3e-36 154.8 139 56.8
Cc07_g20440 Coffea canephora HOM05D003659 ORTHO05D004298 2.3e-34 149.8 102 68.6
Cc05_g03490 Coffea canephora HOM05D003659 ORTHO05D004298 1.2e-33 147.5 102 67.6
Cc00_g05940 Coffea canephora HOM05D003659 ORTHO05D004298 1.5e-33 147.1 108 63.0
Cc08_g06110 Coffea canephora HOM05D003659 ORTHO05D004298 9.9e-33 144.4 102 66.7
Cc10_g09910 Coffea canephora HOM05D003659 ORTHO05D004298 2.9e-32 142.9 96 68.8
Dinv40986 Davidia involucrata HOM05D003659 ORTHO05D004298 8.4e-32 141.4 112 64.3
arahy.Tifrunner.gnm1.ann1.K0Y0BK Arachis hypogaea HOM05D003659 ORTHO05D004298 5.4e-31 138.7 99 62.6
Cc05_g01640 Coffea canephora HOM05D003659 ORTHO05D004298 2.1e-30 136.7 109 61.5
Cc10_g10650 Coffea canephora HOM05D003659 ORTHO05D004298 4.6e-30 135.6 83 73.5
Actinidia36884 Actinidia chinensis HOM05D003659 ORTHO05D004298 1.7e-29 133.7 92 67.4
TPR.G40670 Trifolium pratense HOM05D003659 ORTHO05D004298 1.1e-28 131.0 90 64.4
Cc08_g07620 Coffea canephora HOM05D003659 ORTHO05D004298 1.4e-26 124.0 74 74.3
Cc00_g06440 Coffea canephora HOM05D003659 ORTHO05D004298 9.9e-25 117.9 122 49.2
Cc00_g21920 Coffea canephora HOM05D003659 ORTHO05D004298 4.9e-24 115.5 80 67.5
HPP92_010427 Vanilla planifolia HOM05D003659 ORTHO05D004298 2.3e-21 106.7 102 52.9
Ca_15770_v3 Cicer arietinum L. HOM05D003659 ORTHO05D004298 1.6e-19 100.5 66 69.7
BraA10t44716Z Brassica rapa HOM05D001880 ORTHO05D004730 6.2e-19 98.6 61 67.2
Haze_27667 Corylus avellana HOM05D003659 ORTHO05D004298 2.6e-17 93.2 116 41.4
AagrBONN_evm.TU.Sc2ySwM_117.1898 Anthoceros agrestis HOM05D003659 ORTHO05D004298 3.4e-17 92.8 49 79.6
FvH4_3g15950 Fragaria vesca HOM05D003659 ORTHO05D004298 3.4e-17 92.8 52 80.8
FAN11G3099 Fragaria x ananassa HOM05D003659 ORTHO05D004298 1.5e-12 77.4 44 79.5
Hma1.2p1_0302F.1_g118750 Hydrangea macrophylla HOM05D003659 ORTHO05D004298 2.8e-11 73.2 61 59.0
Cfa026278 Carpinus fangiana HOM05D003659 ORTHO05D121859 4.0e-10 69.3 180 30.6
SHI37098 Sapria himalayana HOM05D003659 ORTHO05D004298 1.2e-09 67.8 49 63.3
Cfa024316 Carpinus fangiana HOM05D003659 ORTHO05D124421 3.8e-08 62.8 195 30.8
Cfa024390 Carpinus fangiana HOM05D003659 ORTHO05D125208 2.4e-07 60.1 166 28.3
A10p26590 Brassica napus HOM05D001880 ORTHO05D004730 3.5e-06 56.2 43 55.8


User provided reference genes

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