Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g104950 Amaranthus hybridus HOM05D003476 ORTHO05D004057 2.0e-80 302.4 155 100.0
Ah.10g035550 Amaranthus hybridus HOM05D003476 ORTHO05D004057 1.4e-65 253.1 163 82.8
AUR62031591 Chenopodium quinoa HOM05D003476 ORTHO05D004057 1.5e-62 243.0 163 74.2
EL10Ac2g04131 Beta vulgaris HOM05D003476 ORTHO05D004057 6.4e-58 227.6 194 63.9
CsaV3_5G008920 Cucumis sativus L. HOM05D003476 ORTHO05D004057 8.9e-52 207.2 151 66.9
Gorai.011G280300 Gossypium raimondii HOM05D003476 ORTHO05D004057 5.8e-51 204.5 175 62.9
CSS0000698 Camellia sinensis var. sinensis HOM05D003476 ORTHO05D004057 7.6e-51 204.1 192 57.8
Peaxi162Scf00360g00616 Petunia axillaris HOM05D003476 ORTHO05D004057 1.3e-50 203.4 164 64.6
PGR142G4151 Punica granatum HOM05D003476 ORTHO05D004057 1.7e-50 203.0 188 58.0
Gohir.A10G229700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 2.9e-50 202.2 181 60.8
Eucgr.G03033 Eucalyptus grandis HOM05D003476 ORTHO05D004057 6.4e-50 201.1 182 59.9
CiPaw.02G189900 Carya illinoinensis HOM05D003476 ORTHO05D004057 8.4e-50 200.7 182 59.3
AUR62012465 Chenopodium quinoa HOM05D003476 ORTHO05D004057 8.4e-50 200.7 163 65.0
GSVIVG01016365001 Vitis vinifera HOM05D003476 ORTHO05D004057 1.4e-49 199.9 193 56.5
Haze_17184 Corylus avellana HOM05D003476 ORTHO05D004057 1.9e-49 199.5 171 61.4
CANSAT56G1382 Cannabis sativa HOM05D003476 ORTHO05D004057 3.2e-49 198.7 182 58.2
Gohir.D10G243900 Gossypium hirsutum HOM05D003476 ORTHO05D004057 3.2e-49 198.7 182 59.9
Actinidia00934 Actinidia chinensis HOM05D003476 ORTHO05D004057 4.2e-49 198.4 177 60.5
CAN.G1252.7 Capsicum annuum HOM05D003476 ORTHO05D004057 4.2e-49 198.4 182 57.7
Hma1.2p1_2137F.1_g314920 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 7.1e-49 197.6 182 59.3
Duzib114G0190 Durio zibethinus HOM05D003476 ORTHO05D004057 9.2e-49 197.2 151 66.2
Glyma.14G061900 Glycine max HOM05D003476 ORTHO05D004057 9.2e-49 197.2 180 59.4
Thecc.10G026100 Theobroma cacao HOM05D003476 ORTHO05D004057 1.6e-48 196.4 182 58.2
TPR.G8041 Trifolium pratense HOM05D003476 ORTHO05D004057 1.6e-48 196.4 179 59.2
LjContig00357g0022102 Lotus japonicus HOM05D003476 ORTHO05D004057 2.1e-48 196.1 179 59.8
Glyma.02G254500 Glycine max HOM05D003476 ORTHO05D004057 2.7e-48 195.7 180 59.4
COL.COLO4_25658 Corchorus olitorius HOM05D003476 ORTHO05D004057 3.5e-48 195.3 171 60.8
Phvul.008G226300 Phaseolus vulgaris HOM05D003476 ORTHO05D004057 3.5e-48 195.3 180 57.8
arahy.Tifrunner.gnm1.ann1.7TWC5I Arachis hypogaea HOM05D003476 ORTHO05D004057 4.6e-48 194.9 177 58.8
arahy.Tifrunner.gnm1.ann1.C86U5P Arachis hypogaea HOM05D003476 ORTHO05D004057 7.8e-48 194.1 179 58.1
CiPaw.01G295800 Carya illinoinensis HOM05D003476 ORTHO05D004057 1.7e-47 193.0 182 59.3
FvH4_7g24030 Fragaria vesca HOM05D003476 ORTHO05D004057 1.7e-47 193.0 184 55.4
FAN01G1497 Fragaria x ananassa HOM05D003476 ORTHO05D004057 1.7e-47 193.0 184 55.4
PGSC0003DMG400025078 Solanum tuberosum HOM05D003476 ORTHO05D004057 1.7e-47 193.0 191 57.1
TWI53G1335 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 1.7e-47 193.0 182 57.1
Duzib128G2055 Durio zibethinus HOM05D003476 ORTHO05D004057 3.0e-47 192.2 182 57.1
VMungo0647G2503 Vigna mungo HOM05D003476 ORTHO05D004057 3.0e-47 192.2 191 55.0
Manes.10G017601 Manihot esculenta HOM05D003476 ORTHO05D004057 3.9e-47 191.8 182 58.8
Nitab4.5_0000099g0220 Nicotiana tabacum HOM05D003476 ORTHO05D004057 3.9e-47 191.8 179 58.1
TWI09G0086 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 3.9e-47 191.8 182 57.7
TWI23G0971 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 3.9e-47 191.8 182 57.7
Ciclev10032786m.g Citrus clementina HOM05D003476 ORTHO05D004057 6.6e-47 191.0 196 54.6
DCAR_011789 Daucus carota HOM05D003476 ORTHO05D004057 6.6e-47 191.0 179 57.5
HanXRQChr12g0370541 Helianthus annuus HOM05D003476 ORTHO05D004057 6.6e-47 191.0 187 58.8
Medtr5g081900 Medicago truncatula HOM05D003476 ORTHO05D004057 6.6e-47 191.0 184 57.1
Solyc04g072032.1 Solanum lycopersicum HOM05D003476 ORTHO05D004057 6.6e-47 191.0 191 57.1
ClCG07G004000 Citrullus lanatus HOM05D003476 ORTHO05D004057 8.7e-47 190.7 186 53.8
Aa31LG5G19650 Aethionema arabicum HOM05D003476 ORTHO05D004057 1.5e-46 189.9 150 65.3
ECA233G2895 Erigeron canadensis HOM05D003476 ORTHO05D004057 3.3e-46 188.7 154 68.8
Migut.F01426 Erythranthe guttata HOM05D003476 ORTHO05D004057 3.3e-46 188.7 188 56.9
Sabra08G0047500 Salix brachista HOM05D003476 ORTHO05D004057 3.3e-46 188.7 171 60.8
Dinv34422 Davidia involucrata HOM05D002885 ORTHO05D003350 5.6e-46 188.0 160 61.9
ECA238G4332 Erigeron canadensis HOM05D003476 ORTHO05D004057 5.6e-46 188.0 183 58.5
Nn2g13624 Nelumbo nucifera HOM05D003476 ORTHO05D004057 9.6e-46 187.2 188 55.9
Prupe.1G392100 Prunus persica HOM05D003476 ORTHO05D004057 1.3e-45 186.8 199 51.8
RcHm_v2.0_Chr6g0299621 Rosa chinensis HOM05D003476 ORTHO05D004057 1.3e-45 186.8 184 56.0
TWI73G1058 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 1.3e-45 186.8 182 55.5
Gohir.A13G016600 Gossypium hirsutum HOM05D003476 ORTHO05D004057 1.6e-45 186.4 182 56.6
LjContig00357g0025168 Lotus japonicus HOM05D003476 ORTHO05D004057 1.6e-45 186.4 182 58.2
MD15G1038100 Malus domestica HOM05D003476 ORTHO05D004057 1.6e-45 186.4 190 53.7
Manes.07G125600 Manihot esculenta HOM05D003476 ORTHO05D004057 1.6e-45 186.4 182 56.6
Potri.010G192700 Populus trichocarpa HOM05D003476 ORTHO05D004057 2.1e-45 186.0 182 56.6
TAR636G1152 Trochodendron aralioides HOM05D003476 ORTHO05D004057 2.1e-45 186.0 180 57.2
A03p22400 Brassica napus HOM05D003476 ORTHO05D004057 2.8e-45 185.7 184 53.8
BraA05t19614Z Brassica rapa HOM05D003476 ORTHO05D004057 2.8e-45 185.7 191 53.4
Psat2g035640 Pisum sativum HOM05D003476 ORTHO05D004057 3.6e-45 185.3 151 65.6
Ca_05932_v3 Cicer arietinum L. HOM05D003476 ORTHO05D004057 4.8e-45 184.9 182 57.1
TWI73G1048 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 6.2e-45 184.5 182 54.9
Carub.0004s2209 Capsella rubella HOM05D003476 ORTHO05D004057 1.1e-44 183.7 183 54.6
Nn5g27487 Nelumbo nucifera HOM05D003476 ORTHO05D004057 1.1e-44 183.7 186 55.4
vmacro10062 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 1.1e-44 183.7 195 53.3
Potri.008G064700 Populus trichocarpa HOM05D003476 ORTHO05D004057 1.4e-44 183.3 182 55.5
AL4G37540 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 1.8e-44 183.0 195 52.8
Sed0008497 Sechium edule HOM05D003476 ORTHO05D004057 1.8e-44 183.0 193 52.3
Sed0009203 Sechium edule HOM05D003476 ORTHO05D004057 1.8e-44 183.0 197 51.3
MSTRG.8311 Avicennia marina HOM05D003476 ORTHO05D004057 2.4e-44 182.6 183 53.6
BraA03t11468Z Brassica rapa HOM05D003476 ORTHO05D004057 2.4e-44 182.6 188 52.1
Gorai.013G019600 Gossypium raimondii HOM05D003476 ORTHO05D004057 3.1e-44 182.2 180 55.6
AT2G39960 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 5.3e-44 181.4 183 53.6
BcaB01g03582 Brassica carinata HOM05D003476 ORTHO05D004057 5.3e-44 181.4 187 54.0
BcaC01g05451 Brassica carinata HOM05D003476 ORTHO05D004057 5.3e-44 181.4 199 51.3
THA.LOC104810073 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 5.3e-44 181.4 182 53.8
BolC4t22371H Brassica oleracea HOM05D003476 ORTHO05D004057 6.9e-44 181.0 168 57.7
Gohir.D13G017700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 6.9e-44 181.0 182 54.9
THA.LOC104824307 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 6.9e-44 181.0 182 52.7
FAN03G0251 Fragaria x ananassa HOM05D003476 ORTHO05D004057 9.0e-44 180.6 208 49.0
C04p07540 Brassica napus HOM05D003476 ORTHO05D004057 1.5e-43 179.9 168 57.1
C03p26520 Brassica napus HOM05D003476 ORTHO05D004057 2.6e-43 179.1 201 50.2
HPP92_016193 Vanilla planifolia HOM05D003476 ORTHO05D004057 2.6e-43 179.1 178 54.5
Hma1.2p1_0710F.1_g207290 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 3.4e-43 178.7 182 56.0
A05p06460 Brassica napus HOM05D003476 ORTHO05D004057 4.4e-43 178.3 200 50.5
C04p67700 Brassica napus HOM05D003476 ORTHO05D004057 5.8e-43 177.9 180 55.0
Os04g0446300 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 5.8e-43 177.9 190 52.6
Sp4g22270 Schrenkiella parvula HOM05D003476 ORTHO05D004057 5.8e-43 177.9 196 51.0
Duzib106G0197 Durio zibethinus HOM05D003476 ORTHO05D004057 1.7e-42 176.4 186 52.2
Thhalv10017265m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 1.7e-42 176.4 188 52.7
Aqoxy4G02660 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 2.2e-42 176.0 180 52.8
SpUn0110_0020 Schrenkiella parvula HOM05D003476 ORTHO05D004057 2.2e-42 176.0 193 50.8
Aqoxy2G00973 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 3.8e-42 175.3 151 62.3
BcaC02g07386 Brassica carinata HOM05D003476 ORTHO05D004057 3.8e-42 175.3 201 50.2
BolC4t28272H Brassica oleracea HOM05D003476 ORTHO05D004057 3.8e-42 175.3 201 50.2
MBI16_g26377_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 3.8e-42 175.3 199 50.8
Zm00001eb081650 Zea mays HOM05D003476 ORTHO05D004057 3.8e-42 175.3 192 51.0
Sp6g04580 Schrenkiella parvula HOM05D003476 ORTHO05D004057 4.9e-42 174.9 196 50.0
A04p30180 Brassica napus HOM05D003476 ORTHO05D004057 6.4e-42 174.5 186 52.2
Rhsim13G0104300 Rhododendron simsii HOM05D003476 ORTHO05D004057 2.4e-41 172.6 224 46.0
BcaB06g29118 Brassica carinata HOM05D003476 ORTHO05D004057 5.4e-41 171.4 188 51.6
AT4G04200 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 7.1e-41 171.0 181 51.4
Nitab4.5_0003770g0040 Nicotiana tabacum HOM05D003476 ORTHO05D004057 7.1e-41 171.0 231 45.0
AL6G47820 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 9.3e-41 170.6 198 48.0
Dinv20956 Davidia involucrata HOM05D003476 ORTHO05D004057 1.6e-40 169.9 151 59.6
Dinv20987 Davidia involucrata HOM05D003476 ORTHO05D004057 1.6e-40 169.9 151 59.6
Thhalv10028970m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 1.6e-40 169.9 202 48.0
Sabra10G0148300 Salix brachista HOM05D003476 ORTHO05D004057 2.1e-40 169.5 152 62.5
Os02g0565200 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 3.5e-40 168.7 177 53.1
CDE04G3620 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 5.1e-39 164.9 168 55.4
PSO801G0598 Papaver somniferum HOM05D003476 ORTHO05D004057 6.6e-39 164.5 182 51.6
Carub.0006s3211 Capsella rubella HOM05D003476 ORTHO05D004057 3.3e-38 162.2 217 44.2
PSO339G6737 Papaver somniferum HOM05D003476 ORTHO05D004057 7.3e-38 161.0 182 50.5
Sc09g0010500 Simmondsia chinensis HOM05D003476 ORTHO05D004057 1.8e-36 156.4 146 60.3
Cfa001366 Carpinus fangiana HOM05D003476 ORTHO05D004057 5.3e-36 154.8 143 58.0
SEGI_14870 Sequoiadendron giganteum HOM05D003476 ORTHO05D004057 6.9e-36 154.5 180 47.2
MBI14_g25462_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 2.6e-35 152.5 198 45.5
MELO3C025156.2 Cucumis melo HOM05D003476 ORTHO05D004057 1.3e-34 150.2 158 50.6
FvH4_2g40940 Fragaria vesca HOM05D003476 ORTHO05D004057 6.4e-34 147.9 164 52.4
unitig_747.g21420 Utricularia gibba HOM05D003476 ORTHO05D004057 7.1e-33 144.4 191 44.0
Aa31LG9G9900 Aethionema arabicum HOM05D002056 ORTHO05D002289 1.2e-32 143.7 137 58.4
MD07G1214300 Malus domestica HOM05D003476 ORTHO05D004057 4.6e-32 141.7 97 72.2
RcHm_v2.0_Chr1g0369411 Rosa chinensis HOM05D003476 ORTHO05D004057 1.0e-31 140.6 106 68.9
MD08G1058200 Malus domestica HOM05D003476 ORTHO05D004057 1.8e-31 139.8 108 66.7
TAR633G1753 Trochodendron aralioides HOM05D003476 ORTHO05D004057 5.1e-31 138.3 106 68.9
FAN27G3190 Fragaria x ananassa HOM05D003476 ORTHO05D004057 1.1e-30 137.1 106 67.9
CARHR134880 Cardamine hirsuta HOM05D003476 ORTHO05D004057 2.5e-30 136.0 99 70.7
Cc02_g06910 Coffea canephora HOM05D003476 ORTHO05D004057 2.5e-30 136.0 114 64.9
HanXRQChr08g0222271 Helianthus annuus HOM05D003476 ORTHO05D004057 3.3e-30 135.6 96 75.0
SalBow6G0374 Salvia bowleyana HOM05D003476 ORTHO05D004057 4.3e-30 135.2 98 70.4
BraA04t18491Z Brassica rapa HOM05D003476 ORTHO05D004057 3.7e-29 132.1 208 42.8
CARHR253310 Cardamine hirsuta HOM05D003476 ORTHO05D004057 1.2e-27 127.1 104 64.4
TAR636G3666 Trochodendron aralioides HOM05D003476 ORTHO05D004057 2.0e-27 126.3 129 55.8
Mapoly0043s0045 Marchantia polymorpha HOM05D003476 ORTHO05D004057 1.1e-25 120.6 183 38.8
MBI14_g36886_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 2.5e-25 119.4 161 42.9
SGA_v2.0_scaffold76G25080 Striga asiatica HOM05D003476 ORTHO05D004057 6.0e-24 114.8 320 30.0
Lj1A950T60 Lonicera japonica HOM05D003476 ORTHO05D004057 1.3e-23 113.6 80 71.2
Aqoxy214s003 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 1.8e-23 113.2 162 40.7
MBI14_g13584_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 1.9e-22 109.8 95 56.8
SalBow6G0036 Salvia bowleyana HOM05D003476 ORTHO05D004057 1.9e-22 109.8 81 67.9
AagrBONN_evm.TU.Sc2ySwM_228.5499 Anthoceros agrestis HOM05D003476 ORTHO05D004057 9.6e-22 107.5 93 57.0
Atru.chr12.241 Acer truncatum HOM05D003476 ORTHO05D004057 4.8e-21 105.1 144 43.1
MBI16_g37731_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 3.4e-19 99.0 74 64.9
vmacro06994 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 3.4e-19 99.0 98 58.2
CBR_g48322 Chara braunii HOM05D003476 ORTHO05D004057 5.5e-17 91.7 149 39.6
Hund03462 Selenicereus undatus HOM05D003476 ORTHO05D004057 2.7e-16 89.4 82 61.0
MD01G1147400 Malus domestica HOM05D003476 ORTHO05D004057 7.9e-16 87.8 131 38.9
ATR0618G195 Amborella trichopoda HOM05D003476 ORTHO05D004057 1.0e-15 87.4 68 63.2
Sc06g0000400 Simmondsia chinensis HOM05D003476 ORTHO05D004057 1.3e-15 87.0 108 46.3
MBI14_g30458_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 6.7e-15 84.7 128 46.1
Prupe.2G246200 Prunus persica HOM05D003476 ORTHO05D004057 6.7e-15 84.7 61 68.9
CDE03G0334 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 3.3e-14 82.4 157 36.9
Lsat_1_v5_gn_5_2880 Lactuca sativa HOM05D003476 ORTHO05D004057 4.3e-14 82.0 120 43.3
Solyc04g072110.4 Solanum lycopersicum HOM05D003476 ORTHO05D004057 2.2e-13 79.7 61 67.2
Lj1A950T61 Lonicera japonica HOM05D003476 ORTHO05D004057 3.7e-13 79.0 70 57.1
FAN06G4561 Fragaria x ananassa HOM05D003476 ORTHO05D004057 8.2e-13 77.8 63 57.1
RcHm_v2.0_Chr1g0369421 Rosa chinensis HOM05D003476 ORTHO05D004057 8.2e-13 77.8 61 60.7
SalBow6G1938 Salvia bowleyana HOM05D003476 ORTHO05D004057 8.2e-13 77.8 61 60.7
Cpa.g.c40050 Carica papaya HOM05D003476 ORTHO05D004057 1.4e-12 77.0 61 59.0
Cc02_g06900 Coffea canephora HOM05D003476 ORTHO05D004057 1.4e-12 77.0 69 56.5
Prupe.2G246300 Prunus persica HOM05D003476 ORTHO05D004057 1.4e-12 77.0 67 55.2
Oeu039001.1 Olea europaea HOM05D003476 ORTHO05D004057 1.8e-12 76.6 61 60.7
HanXRQChr08g0222281 Helianthus annuus HOM05D003476 ORTHO05D004057 4.1e-12 75.5 67 56.7
Oeu039509.1 Olea europaea HOM05D003476 ORTHO05D004057 5.3e-12 75.1 61 59.0
Oeu036632.1 Olea europaea HOM05D003476 ORTHO05D004057 1.2e-11 73.9 61 63.9
Actinidia13919 Actinidia chinensis HOM05D003476 ORTHO05D004057 2.0e-11 73.2 61 57.4
Zm00001eb420270 Zea mays HOM05D000224 ORTHO05D002390 4.5e-11 72.0 44 72.7
ClCG07G004010 Citrullus lanatus HOM05D003476 ORTHO05D004057 5.9e-11 71.6 61 54.1
MBI08_g04934_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 2.2e-10 69.7 68 54.4
Sopen04g028030 Solanum pennellii HOM05D003476 ORTHO05D004057 2.2e-10 69.7 69 53.6
TAR633G0614 Trochodendron aralioides HOM05D003476 ORTHO05D004057 5.0e-10 68.6 67 50.7
BcaB02g09065 Brassica carinata HOM05D003476 ORTHO05D004057 6.5e-10 68.2 64 46.9
MD08G1058400 Malus domestica HOM05D003476 ORTHO05D004057 6.5e-10 68.2 64 51.6
FAN15G1698 Fragaria x ananassa HOM05D003476 ORTHO05D004057 2.5e-09 66.2 59 50.8
CARHR253320 Cardamine hirsuta HOM05D003476 ORTHO05D004057 3.2e-09 65.9 61 47.5
ATR0618G113 Amborella trichopoda HOM05D003476 ORTHO05D004057 5.5e-09 65.1 73 52.1
vmacro06993 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 2.7e-08 62.8 54 57.4
CARHR134890 Cardamine hirsuta HOM05D003476 ORTHO05D004057 4.6e-08 62.0 73 43.8
Lalb_Chr20g0116611 Lupinus albus HOM05D003476 ORTHO05D004057 6.7e-07 58.2 32 78.1


User provided reference genes

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