Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 3.5e-164 581.6 310 100.0
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 2.9e-158 562.0 310 96.5
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 1.2e-140 503.4 310 86.1
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 1.1e-136 490.3 310 83.5
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 1.6e-124 449.9 310 74.2
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 6.0e-124 448.0 310 73.9
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 6.7e-123 444.5 310 72.6
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 1.1e-122 443.7 309 74.4
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 4.3e-122 441.8 310 74.8
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 4.3e-122 441.8 319 73.7
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 5.6e-122 441.4 310 73.2
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 2.1e-121 439.5 312 73.7
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 6.2e-121 438.0 310 75.2
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 1.4e-120 436.8 310 72.3
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 2.4e-120 436.0 310 72.9
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 3.1e-120 435.6 310 73.9
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 6.9e-120 434.5 310 75.5
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 9.0e-120 434.1 310 73.5
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 1.2e-119 433.7 318 73.0
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 2.0e-119 433.0 310 73.9
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 2.0e-119 433.0 310 72.9
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 2.6e-119 432.6 310 73.9
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 2.6e-119 432.6 310 72.9
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 3.4e-119 432.2 310 71.6
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 4.5e-119 431.8 310 71.0
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 4.5e-119 431.8 321 70.7
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 5.8e-119 431.4 318 71.4
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 2.2e-118 429.5 310 71.9
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 2.9e-118 429.1 310 71.9
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 2.9e-118 429.1 322 70.8
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 2.9e-118 429.1 310 71.6
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 4.9e-118 428.3 318 71.1
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 6.4e-118 427.9 318 71.4
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 8.4e-118 427.6 310 71.6
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 8.4e-118 427.6 310 71.6
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.1e-117 427.2 318 71.1
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 1.1e-117 427.2 310 72.3
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.1e-117 427.2 310 71.3
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 1.9e-117 426.4 319 70.8
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 2.4e-117 426.0 310 71.6
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 3.2e-117 425.6 311 72.3
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 4.2e-117 425.2 318 70.8
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 5.5e-117 424.9 312 71.2
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 1.2e-116 423.7 317 70.7
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 1.2e-116 423.7 317 70.7
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.2e-116 423.7 318 70.8
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.2e-116 423.7 318 71.4
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 1.6e-116 423.3 262 84.0
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 1.6e-116 423.3 310 71.9
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 1.6e-116 423.3 310 71.9
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 2.1e-116 422.9 310 71.6
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 2.1e-116 422.9 310 70.3
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 2.7e-116 422.5 310 71.0
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 2.7e-116 422.5 310 71.9
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 3.5e-116 422.2 310 71.6
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 3.5e-116 422.2 310 71.0
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 6.0e-116 421.4 318 69.8
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 6.0e-116 421.4 318 70.4
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 7.9e-116 421.0 310 70.0
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 7.9e-116 421.0 318 70.4
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 2.3e-115 419.5 318 70.4
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 3.0e-115 419.1 310 71.3
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 3.9e-115 418.7 318 69.8
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 3.9e-115 418.7 318 70.4
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 8.7e-115 417.5 314 70.7
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 8.7e-115 417.5 318 68.9
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 1.1e-114 417.2 310 72.3
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 1.1e-114 417.2 311 70.7
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 2.5e-114 416.0 315 70.8
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 2.1e-113 412.9 310 71.6
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 4.8e-113 411.8 321 69.2
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 6.2e-113 411.4 312 69.6
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 1.8e-112 409.8 311 70.4
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 2.4e-112 409.5 315 70.5
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 4.0e-112 408.7 307 69.1
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 5.3e-112 408.3 309 68.0
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 5.3e-112 408.3 310 68.1
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 1.2e-111 407.1 310 70.6
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 1.5e-111 406.8 365 61.9
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 2.0e-111 406.4 310 68.7
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 1.0e-110 404.1 313 69.6
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 1.0e-110 404.1 310 67.7
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 3.8e-110 402.1 318 67.3
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 4.2e-109 398.7 311 65.9
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 2.1e-108 396.4 311 66.2
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 7.9e-108 394.4 311 65.6
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 7.9e-108 394.4 312 67.9
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.3e-107 393.7 312 67.3
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 1.3e-107 393.7 310 68.7
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.3e-107 393.7 310 68.1
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 6.7e-107 391.3 312 67.6
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 6.7e-107 391.3 316 65.5
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 8.7e-107 391.0 297 70.0
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 3.3e-106 389.0 285 71.9
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 3.3e-106 389.0 316 66.5
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 4.3e-106 388.7 296 69.9
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 5.7e-106 388.3 278 73.4
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 9.7e-106 387.5 296 69.9
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 9.7e-106 387.5 316 66.1
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.3e-105 387.1 345 61.2
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 2.2e-105 386.3 296 69.6
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 2.8e-105 386.0 262 76.7
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 1.1e-104 384.0 311 66.2
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 5.0e-102 375.2 312 62.8
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 1.4e-101 373.6 281 69.8
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 5.5e-101 371.7 288 68.8
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 1.2e-100 370.5 288 68.4
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 1.2e-100 370.5 279 69.2
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 1.0e-99 367.5 321 62.6
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.8e-99 366.7 319 64.9
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 5.1e-99 365.2 262 70.2
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 5.5e-93 345.1 277 66.8
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 7.2e-93 344.7 256 70.3
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 2.1e-92 343.2 317 61.5
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 5.7e-90 335.1 310 61.3
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 3.1e-88 329.3 310 61.6
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 2.9e-86 322.8 256 66.0
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.9e-85 320.1 314 55.1
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 4.4e-82 308.9 310 56.5
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.4e-80 303.9 310 54.8
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 7.7e-79 298.1 231 68.4
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 1.0e-75 287.7 242 62.4
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 5.7e-74 282.0 221 64.7
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 2.1e-68 263.5 318 48.4
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 8.0e-68 261.5 315 46.3
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.5e-66 257.3 391 45.8
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 1.5e-66 257.3 740 30.1
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 1.8e-64 250.4 312 48.7
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 4.1e-56 222.6 178 69.7
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 2.0e-55 220.3 185 65.9
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 2.7e-55 219.9 290 44.5
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 1.7e-49 200.7 259 49.8
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 2.2e-49 200.3 157 72.6
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 4.3e-45 186.0 157 68.2
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 4.7e-44 182.6 120 81.7
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 2.9e-41 173.3 120 79.2
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 1.6e-39 167.5 143 65.0
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 1.2e-36 157.9 260 43.8
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 5.8e-34 149.1 244 39.3
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 1.0e-30 138.3 127 63.8
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 1.7e-30 137.5 309 32.4
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 8.6e-30 135.2 112 58.0
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 5.2e-27 125.9 91 70.3
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 5.2e-27 125.9 110 60.9
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 3.8e-25 119.8 93 66.7
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 6.4e-25 119.0 151 55.6
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.3e-22 110.5 108 61.1
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 1.1e-21 108.2 96 57.3
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 2.2e-17 94.0 62 82.3
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 2.2e-17 94.0 89 50.6
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 6.0e-15 85.9 84 57.1
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 6.6e-14 82.4 58 67.2
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 1.1e-11 75.1 394 24.1
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 9.3e-08 62.0 126 35.7


User provided reference genes

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