Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g104680 Amaranthus hybridus HOM05D004141 ORTHO05D005416 1.7e-232 808.9 402 100.0
AUR62019583 Chenopodium quinoa HOM05D004141 ORTHO05D005416 4.1e-197 691.4 404 83.2
AUR62037553 Chenopodium quinoa HOM05D004141 ORTHO05D005416 4.1e-189 664.8 384 84.6
Sc03g0010560 Simmondsia chinensis HOM05D004141 ORTHO05D005416 1.2e-188 663.3 409 79.5
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 1.4e-184 649.8 408 77.7
TWI31G0451 Tripterygium wilfordii HOM05D004141 ORTHO05D005416 5.1e-184 647.9 409 77.5
EL10Ac4g08353 Beta vulgaris HOM05D004141 ORTHO05D005416 1.5e-183 646.4 490 69.0
CSS0023821 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 5.7e-183 644.4 409 76.0
Dinv15000 Davidia involucrata HOM05D004141 ORTHO05D005416 5.7e-183 644.4 409 77.0
CsaV3_4G008070 Cucumis sativus L. HOM05D004141 ORTHO05D005416 3.7e-182 641.7 403 77.9
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 3.7e-182 641.7 411 76.4
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 2.4e-181 639.0 397 78.6
Lalb_Chr25g0285811 Lupinus albus HOM05D004141 ORTHO05D005416 2.4e-181 639.0 407 77.1
QL06p023676 Quercus lobata HOM05D004141 ORTHO05D005416 4.1e-181 638.3 406 77.1
Ciclev10020399m.g Citrus clementina HOM05D004141 ORTHO05D005416 5.3e-181 637.9 409 75.1
Sopen06g033870 Solanum pennellii HOM05D004141 ORTHO05D005416 5.3e-181 637.9 409 76.0
PGSC0003DMG400030465 Solanum tuberosum HOM05D004141 ORTHO05D005416 5.3e-181 637.9 409 76.3
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 9.1e-181 637.1 409 74.8
CsaV3_7G010060 Cucumis sativus L. HOM05D004141 ORTHO05D005416 1.2e-180 636.7 401 77.6
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 2.0e-180 636.0 397 78.1
MELO3C016129.2 Cucumis melo HOM05D004141 ORTHO05D005416 2.0e-180 636.0 415 75.9
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 2.6e-180 635.6 400 77.5
Solyc06g082490.4 Solanum lycopersicum HOM05D004141 ORTHO05D005416 2.6e-180 635.6 409 75.8
Glyma.12G230400 Glycine max HOM05D004141 ORTHO05D005416 5.9e-180 634.4 408 76.2
Potri.011G109000 Populus trichocarpa HOM05D004141 ORTHO05D005416 7.7e-180 634.0 402 76.4
TAR627G0990 Trochodendron aralioides HOM05D004141 ORTHO05D005416 7.7e-180 634.0 404 75.5
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 1.3e-179 633.3 403 76.9
Eucgr.F01245 Eucalyptus grandis HOM05D004141 ORTHO05D005416 2.9e-179 632.1 406 75.1
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 3.8e-179 631.7 408 75.2
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 3.8e-179 631.7 408 75.2
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 6.5e-179 630.9 409 74.8
Ca_10927_v3 Cicer arietinum L. HOM05D004141 ORTHO05D005416 6.5e-179 630.9 408 75.2
Lj3g0016162 Lotus japonicus HOM05D004141 ORTHO05D005416 8.5e-179 630.6 408 74.5
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 1.9e-178 629.4 397 77.1
Atru.chr2.2126 Acer truncatum HOM05D004141 ORTHO05D005416 3.2e-178 628.6 409 74.8
PGR004G1319 Punica granatum HOM05D004141 ORTHO05D005416 3.2e-178 628.6 408 75.7
PGR117G0003 Punica granatum HOM05D004141 ORTHO05D005416 3.2e-178 628.6 408 75.7
Hma1.2p1_1016F.1_g248060 Hydrangea macrophylla HOM05D004141 ORTHO05D005416 4.2e-178 628.2 409 75.6
CANSAT78G1263 Cannabis sativa HOM05D004141 ORTHO05D005416 7.2e-178 627.5 409 75.6
Lj6g0002556 Lotus japonicus HOM05D004141 ORTHO05D005416 7.2e-178 627.5 408 74.3
MBI14_g32936_MAGBIO Magnolia biondii HOM05D004141 ORTHO05D005416 7.2e-178 627.5 409 74.3
Actinidia18802 Actinidia chinensis HOM05D004141 ORTHO05D005416 9.4e-178 627.1 408 74.3
VMungo1080G0359 Vigna mungo HOM05D004141 ORTHO05D005416 9.4e-178 627.1 408 74.3
Cfa017272 Carpinus fangiana HOM05D004141 ORTHO05D005416 1.6e-177 626.3 410 75.1
arahy.Tifrunner.gnm1.ann1.K2RFPE Arachis hypogaea HOM05D004141 ORTHO05D005416 2.1e-177 625.9 397 76.1
CiPaw.11G159700 Carya illinoinensis HOM05D004141 ORTHO05D005416 2.1e-177 625.9 410 75.6
DCAR_030174 Daucus carota HOM05D004141 ORTHO05D005416 2.1e-177 625.9 409 74.8
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 2.7e-177 625.5 409 75.1
arahy.Tifrunner.gnm1.ann1.2ZZ8MX Arachis hypogaea HOM05D004141 ORTHO05D005416 3.6e-177 625.2 397 76.1
CANSAT78G2476 Cannabis sativa HOM05D004141 ORTHO05D005416 3.6e-177 625.2 409 75.1
TAR629G0569 Trochodendron aralioides HOM05D004141 ORTHO05D005416 6.1e-177 624.4 404 75.7
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 1.4e-176 623.2 406 74.6
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 1.4e-176 623.2 406 76.1
vmacro09491 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 1.4e-176 623.2 403 75.4
Atru.chr3.1550 Acer truncatum HOM05D004141 ORTHO05D005416 3.0e-176 622.1 451 69.4
Nn7g36869 Nelumbo nucifera HOM05D004141 ORTHO05D005416 3.0e-176 622.1 404 75.0
Sabra11G0096600 Salix brachista HOM05D004141 ORTHO05D005416 3.0e-176 622.1 432 71.3
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 3.9e-176 621.7 404 75.0
Oeu061361.2 Olea europaea HOM05D004141 ORTHO05D005416 3.9e-176 621.7 409 74.8
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 5.1e-176 621.3 397 75.6
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 5.1e-176 621.3 397 76.6
SGA_v2.0_scaffold130G34289 Striga asiatica HOM05D004141 ORTHO05D005416 5.1e-176 621.3 410 74.1
Prupe.5G052700 Prunus persica HOM05D004141 ORTHO05D005416 1.1e-175 620.2 410 74.9
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 1.5e-175 619.8 397 76.6
Cc05_g11010 Coffea canephora HOM05D004141 ORTHO05D005416 1.5e-175 619.8 404 75.7
Phvul.005G081600 Phaseolus vulgaris HOM05D004141 ORTHO05D005416 1.5e-175 619.8 408 73.5
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 4.4e-175 618.2 398 75.9
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 4.4e-175 618.2 398 75.9
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 4.4e-175 618.2 398 75.9
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 5.7e-175 617.8 390 77.2
RcHm_v2.0_Chr5g0030771 Rosa chinensis HOM05D004141 ORTHO05D005416 5.7e-175 617.8 409 73.8
Prupe.4G241400 Prunus persica HOM05D004141 ORTHO05D005416 2.2e-174 615.9 410 74.4
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 2.8e-174 615.5 406 73.6
SalBow7G1122 Salvia bowleyana HOM05D004141 ORTHO05D005416 3.7e-174 615.1 409 73.8
MSTRG.11343 Avicennia marina HOM05D004141 ORTHO05D005416 6.3e-174 614.4 410 74.4
Rhsim04G0026700 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.1e-173 613.6 446 68.4
FAN16G3678 Fragaria x ananassa HOM05D004141 ORTHO05D005416 1.8e-173 612.8 413 73.1
HanXRQChr15g0495231 Helianthus annuus HOM05D004141 ORTHO05D005416 1.8e-173 612.8 396 74.5
MD11G1264500 Malus domestica HOM05D004141 ORTHO05D005416 1.8e-173 612.8 409 73.6
Glyma.13G269200 Glycine max HOM05D004141 ORTHO05D005416 3.1e-173 612.1 432 71.1
Aqoxy1G02012 Aquilegia oxysepala HOM05D004141 ORTHO05D005416 4.1e-173 611.7 411 74.5
ClCG07G010270 Citrullus lanatus HOM05D004141 ORTHO05D005416 4.1e-173 611.7 409 74.3
HanXRQChr04g0118321 Helianthus annuus HOM05D004141 ORTHO05D005416 7.0e-173 610.9 395 74.7
Nitab4.5_0000383g0110 Nicotiana tabacum HOM05D004141 ORTHO05D005416 7.0e-173 610.9 400 75.0
GSVIVG01014186001 Vitis vinifera HOM05D004141 ORTHO05D005416 7.0e-173 610.9 402 74.6
FAN11G2786 Fragaria x ananassa HOM05D004141 ORTHO05D005416 9.1e-173 610.5 423 71.6
Peaxi162Scf00390g00331 Petunia axillaris HOM05D004141 ORTHO05D005416 3.5e-172 608.6 397 76.1
THA.LOC104812317 Tarenaya hassleriana HOM05D004141 ORTHO05D005416 7.7e-172 607.4 403 73.9
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 1.0e-171 607.1 406 72.2
FAN21G2932 Fragaria x ananassa HOM05D004141 ORTHO05D005416 8.5e-171 604.0 420 71.4
ECA232G4285 Erigeron canadensis HOM05D004141 ORTHO05D005416 2.5e-170 602.4 395 73.7
Peaxi162Scf00111g01467 Petunia axillaris HOM05D004141 ORTHO05D005416 4.2e-170 601.7 398 74.6
Lj1C587G1 Lonicera japonica HOM05D004141 ORTHO05D005416 3.6e-169 598.6 403 73.7
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 1.4e-168 596.7 403 74.2
Rhsim02G0051200 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.3e-168 595.9 457 66.5
Lsat_1_v5_gn_7_102521 Lactuca sativa HOM05D004141 ORTHO05D005416 2.0e-167 592.8 399 73.2
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 5.7e-167 591.3 415 71.1
Zm00001eb072460 Zea mays HOM05D004141 ORTHO05D005416 7.0e-165 584.3 403 70.5
HPP92_017867 Vanilla planifolia HOM05D004141 ORTHO05D005416 1.6e-164 583.2 403 70.2
Sed0017698 Sechium edule HOM05D004141 ORTHO05D005416 3.5e-164 582.0 444 67.1
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 1.7e-163 579.7 403 69.7
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 7.2e-162 574.3 413 69.7
arahy.Tifrunner.gnm1.ann1.DJ268J Arachis hypogaea HOM05D004141 ORTHO05D005416 1.6e-161 573.2 432 66.0
Actinidia35211 Actinidia chinensis HOM05D004141 ORTHO05D005416 2.3e-160 569.3 367 75.7
FAN25G0103 Fragaria x ananassa HOM05D004141 ORTHO05D005416 2.6e-159 565.8 402 69.2
SEGI_24046 Sequoiadendron giganteum HOM05D004141 ORTHO05D005416 1.4e-157 560.1 400 68.8
unitig_72.g29740 Utricularia gibba HOM05D004141 ORTHO05D005416 1.8e-157 559.7 426 65.3
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 2.1e-153 546.2 411 67.9
ECA240G0250 Erigeron canadensis HOM05D004141 ORTHO05D005416 4.7e-153 545.0 355 74.1
unitig_746.g26536 Utricularia gibba HOM05D004141 ORTHO05D005416 6.1e-153 544.7 387 68.5
Sed0020321 Sechium edule HOM05D004141 ORTHO05D005416 8.0e-153 544.3 350 76.0
Manes.03G100400 Manihot esculenta HOM05D004141 ORTHO05D005416 1.4e-152 543.5 350 76.3
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 4.9e-150 535.0 358 71.8
CSS0043357 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 4.5e-148 528.5 411 67.2
Pp3c12_4340 Physcomitrium patens HOM05D004141 ORTHO05D005416 8.6e-147 524.2 421 61.5
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 1.6e-145 520.0 417 61.9
CSS0028209 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 1.7e-142 510.0 395 67.3
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 2.7e-140 502.7 391 62.9
Oeu031026.1 Olea europaea HOM05D004141 ORTHO05D005416 6.4e-134 481.5 382 64.1
Mapoly0001s0113 Marchantia polymorpha HOM05D004141 ORTHO05D005416 2.4e-133 479.6 395 61.3
Dinv18368 Davidia involucrata HOM05D004141 ORTHO05D005416 4.1e-133 478.8 409 61.4
Thhalv10019736m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 2.8e-129 466.1 396 60.6
Gohir.A01G053700 Gossypium hirsutum HOM05D004141 ORTHO05D005416 2.0e-127 459.9 312 72.1
SHI08479 Sapria himalayana HOM05D004141 ORTHO05D000023 2.2e-118 429.9 366 61.5
Potri.001G393000 Populus trichocarpa HOM05D004141 ORTHO05D005416 5.4e-109 398.7 368 58.4
PRCOL_00006028 Prasinoderma coloniale HOM05D004141 ORTHO05D005416 5.1e-107 392.1 410 50.5
TPR.G5502 Trifolium pratense HOM05D004141 ORTHO05D005416 1.8e-104 383.6 254 74.4
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 7.1e-101 371.7 412 49.8
Cre02.g095147 Chlamydomonas reinhardtii HOM05D004141 ORTHO05D005416 1.8e-96 357.1 449 45.7
CARHR072350 Cardamine hirsuta HOM05D004141 ORTHO05D005416 3.4e-95 352.8 209 81.3
CAN.G874.81 Capsicum annuum HOM05D004141 ORTHO05D005416 2.2e-94 350.1 209 80.9
C03p92790 Brassica napus HOM05D004141 ORTHO05D005416 1.0e-91 341.3 202 82.2
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 2.3e-91 340.1 406 47.0
DCAR_013161 Daucus carota HOM05D004141 ORTHO05D005416 3.9e-91 339.3 255 67.8
vmacro11945 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 1.8e-88 330.5 364 53.0
Haze_09318 Corylus avellana HOM05D004141 ORTHO05D005416 6.9e-88 328.6 273 61.5
Rhsim12G0175600 Rhododendron simsii HOM05D004141 ORTHO05D005416 6.5e-78 295.4 403 45.4
CBR_g988 Chara braunii HOM05D004141 ORTHO05D005416 4.3e-74 282.7 455 37.4
CAN.G4738.1 Capsicum annuum HOM05D004141 ORTHO05D005416 4.4e-66 256.1 155 76.1
Nitab4.5_0002851g0030 Nicotiana tabacum HOM05D004141 ORTHO05D005416 9.7e-66 255.0 367 43.3
Rhsim08G0243200 Rhododendron simsii HOM05D004141 ORTHO05D005416 3.7e-65 253.1 290 50.3
Lalb_Chr01g0016531 Lupinus albus HOM05D004141 ORTHO05D005416 9.1e-64 248.4 153 75.2
Cfa025499 Carpinus fangiana HOM05D004141 ORTHO05D005416 7.7e-63 245.4 427 40.5
BcaC01g01525 Brassica carinata HOM05D004141 ORTHO05D005416 9.4e-61 238.4 174 69.5
Ciclev10022380m.g Citrus clementina HOM05D004141 ORTHO05D005416 9.7e-58 228.4 247 50.6
Ciclev10022599m.g Citrus clementina HOM05D004141 ORTHO05D005416 3.8e-54 216.5 187 61.0
MD00G1077900 Malus domestica HOM05D004141 ORTHO05D005416 1.9e-53 214.2 182 63.2
MD03G1178900 Malus domestica HOM05D004141 ORTHO05D005416 1.0e-51 208.4 221 55.2
Rhsim06G0208700 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.0e-50 204.1 340 40.6
Rhsim02G0229600 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.2e-46 190.7 123 74.8
Lalb_Chr01g0016541 Lupinus albus HOM05D004141 ORTHO05D048486 2.0e-42 177.6 131 69.5
BcaB05g25154 Brassica carinata HOM05D004141 ORTHO05D005416 1.2e-36 158.3 144 57.6
SHI22488 Sapria himalayana HOM05D004141 ORTHO05D005416 7.0e-32 142.5 269 34.2
C02p35890 Brassica napus HOM05D004141 ORTHO05D005416 6.8e-27 125.9 298 31.5
Rhsim02G0051400 Rhododendron simsii HOM05D004141 ORTHO05D000437 1.5e-26 124.8 85 69.4
BraA02t07239Z Brassica rapa HOM05D004141 ORTHO05D026982 6.4e-25 119.4 75 73.3
A02p22350 Brassica napus HOM05D004141 ORTHO05D026982 1.8e-24 117.9 75 73.3
Nitab4.5_0010088g0010 Nicotiana tabacum HOM05D004141 ORTHO05D005416 3.9e-22 110.2 103 54.4
EL10Ac3g06735 Beta vulgaris HOM05D004141 ORTHO05D026982 5.0e-22 109.8 58 86.2
EL10Ac3g06738 Beta vulgaris HOM05D004141 ORTHO05D026982 1.9e-21 107.8 56 87.5
MD00G1077500 Malus domestica HOM05D004141 ORTHO05D005416 2.5e-21 107.5 66 74.2
BcaC01g01527 Brassica carinata HOM05D004141 ORTHO05D009181 7.3e-13 79.3 59 66.1
MD00G1078000 Malus domestica HOM05D004141 ORTHO05D005416 2.8e-12 77.4 43 76.7
BcaC01g01526 Brassica carinata HOM05D004141 ORTHO05D005416 6.2e-12 76.3 58 63.8
BcaC03g15838 Brassica carinata HOM05D004141 ORTHO05D005416 2.0e-10 71.2 49 65.3
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 5.8e-10 69.7 210 28.6
Hma1.2p1_0494F.1_g165410 Hydrangea macrophylla HOM05D000783 ORTHO05D000705 1.4e-08 65.1 189 27.0
Nn3g21545 Nelumbo nucifera HOM05D000783 ORTHO05D000705 5.4e-08 63.2 225 24.4
Oeu008350.1 Olea europaea HOM05D000783 ORTHO05D000705 7.8e-07 59.3 188 25.5
Oeu048326.1 Olea europaea HOM05D000783 ORTHO05D000705 1.3e-06 58.5 188 24.5
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 3.0e-06 57.4 173 28.9
Prupe.4G169100 Prunus persica HOM05D004141 ORTHO05D005416 3.0e-06 57.4 55 60.0
vmacro15144 Vaccinium macrocarpon HOM05D000783 ORTHO05D000705 3.0e-06 57.4 218 23.4
MD05G1191300 Malus domestica HOM05D002084 ORTHO05D002031 3.9e-06 57.0 53 56.6


User provided reference genes

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