Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g104380 Amaranthus hybridus HOM05D001083 ORTHO05D026514 8.8e-57 223.4 113 100.0
ATR0022G035 Amborella trichopoda HOM05D001083 ORTHO05D006562 2.1e-10 69.3 43 81.4
Psat2g066440 Pisum sativum HOM05D001083 ORTHO05D006562 2.8e-10 68.9 43 79.1
PGR031G0272 Punica granatum HOM05D001083 ORTHO05D006562 3.6e-10 68.6 43 79.1
Mapoly0057s0092 Marchantia polymorpha HOM05D001083 ORTHO05D006562 4.7e-10 68.2 45 77.8
Hund16868 Selenicereus undatus HOM05D001083 ORTHO05D006562 4.7e-10 68.2 43 79.1
Atru.chr13.1040 Acer truncatum HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
Actinidia30816 Actinidia chinensis HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
Aqoxy5G01325 Aquilegia oxysepala HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
EL10Ac1g01079 Beta vulgaris HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
CSS0030378 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
CANSAT25G1784 Cannabis sativa HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
CANSAT80G2842 Cannabis sativa HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
Cpa.g.sc309.3 Carica papaya HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
CiPaw.07G167500 Carya illinoinensis HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
CDE10G0373 Ceratophyllum demersum HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
CDE10G1263 Ceratophyllum demersum HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
Ca_05403_v3 Cicer arietinum L. HOM05D001083 ORTHO05D006562 6.2e-10 67.8 41 80.5
ClCG08G011800 Citrullus lanatus HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
Ciclev10000603m.g Citrus clementina HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
MELO3C011104.2 Cucumis melo HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
CsaV3_2G030420 Cucumis sativus L. HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
DCAR_009571 Daucus carota HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
ECA232G1336 Erigeron canadensis HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
Migut.N02863 Erythranthe guttata HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
HanXRQChr09g0250891 Helianthus annuus HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
Lsat_1_v5_gn_9_74041 Lactuca sativa HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
MBI06_g36047_MAGBIO Magnolia biondii HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
Medtr5g065880 Medicago truncatula HOM05D001083 ORTHO05D006562 6.2e-10 67.8 41 80.5
Nn5g29925 Nelumbo nucifera HOM05D001083 ORTHO05D001637 6.2e-10 67.8 43 79.1
Oeu016836.1 Olea europaea HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
Potri.002G104000 Populus trichocarpa HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
Sed0003733 Sechium edule HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
Sed0007911 Sechium edule HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
TPR.G28355 Trifolium pratense HOM05D001083 ORTHO05D006562 6.2e-10 67.8 41 80.5
TWI36G0898 Tripterygium wilfordii HOM05D001083 ORTHO05D006562 6.2e-10 67.8 43 79.1
SEGI_39500 Sequoiadendron giganteum HOM05D001083 ORTHO05D006562 8.1e-10 67.4 43 79.1
Sc01g0001070 Simmondsia chinensis HOM05D001083 ORTHO05D006562 8.1e-10 67.4 43 79.1
THA.LOC104800044 Tarenaya hassleriana HOM05D001083 ORTHO05D006562 8.1e-10 67.4 43 76.7
THA.LOC104806836 Tarenaya hassleriana HOM05D001083 ORTHO05D006562 8.1e-10 67.4 43 76.7
MSTRG.22176 Avicennia marina HOM05D001083 ORTHO05D006562 1.1e-09 67.0 41 80.5
CSS0034477 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 1.1e-09 67.0 43 76.7
CSS0045493 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 1.1e-09 67.0 43 76.7
Cfa013696 Carpinus fangiana HOM05D001083 ORTHO05D001637 1.1e-09 67.0 43 76.7
Haze_22337 Corylus avellana HOM05D001083 ORTHO05D006562 1.1e-09 67.0 43 76.7
FvH4_5g35680 Fragaria vesca HOM05D001083 ORTHO05D006562 1.1e-09 67.0 43 76.7
FAN04G2240 Fragaria x ananassa HOM05D001083 ORTHO05D006562 1.1e-09 67.0 43 76.7
FAN08G3511 Fragaria x ananassa HOM05D001083 ORTHO05D006562 1.1e-09 67.0 43 76.7
FAN13G1737 Fragaria x ananassa HOM05D001083 ORTHO05D006562 1.1e-09 67.0 43 76.7
FAN18G1491 Fragaria x ananassa HOM05D001083 ORTHO05D006562 1.1e-09 67.0 43 76.7
MD15G1382200 Malus domestica HOM05D001083 ORTHO05D006562 1.1e-09 67.0 43 76.7
Pp3c27_3970 Physcomitrium patens HOM05D001083 ORTHO05D006562 1.1e-09 67.0 41 80.5
Prupe.1G528400 Prunus persica HOM05D001083 ORTHO05D006562 1.1e-09 67.0 43 76.7
QL09p017286 Quercus lobata HOM05D001083 ORTHO05D006562 1.1e-09 67.0 43 76.7
Rhsim06G0073600 Rhododendron simsii HOM05D001083 ORTHO05D006562 1.1e-09 67.0 43 76.7
RcHm_v2.0_Chr7g0237321 Rosa chinensis HOM05D001083 ORTHO05D006562 1.1e-09 67.0 43 76.7
SalBow2G2226 Salvia bowleyana HOM05D001083 ORTHO05D006562 1.1e-09 67.0 43 76.7
TAR625G0337 Trochodendron aralioides HOM05D001083 ORTHO05D006562 1.1e-09 67.0 43 76.7
vmacro21321 Vaccinium macrocarpon HOM05D001083 ORTHO05D006562 1.1e-09 67.0 43 76.7
Ah.05g170690 Amaranthus hybridus HOM05D001083 ORTHO05D006562 1.4e-09 66.6 41 80.5
AL7G28580 Arabidopsis lyrata HOM05D001083 ORTHO05D006562 1.4e-09 66.6 43 79.1
AT4G24620 Arabidopsis thaliana HOM05D001083 ORTHO05D006562 1.4e-09 66.6 43 79.1
CAN.G1375.13 Capsicum annuum HOM05D001083 ORTHO05D006562 1.4e-09 66.6 41 80.5
AUR62019023 Chenopodium quinoa HOM05D001083 ORTHO05D006562 1.4e-09 66.6 41 80.5
AUR62027860 Chenopodium quinoa HOM05D001083 ORTHO05D006562 1.4e-09 66.6 41 80.5
Cc10_g15670 Coffea canephora HOM05D001083 ORTHO05D006562 1.4e-09 66.6 41 80.5
Eucgr.F02133 Eucalyptus grandis HOM05D001083 ORTHO05D006562 1.4e-09 66.6 43 74.4
Gohir.A06G032624 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.4e-09 66.6 41 80.5
Gohir.D06G032300 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.4e-09 66.6 41 80.5
Gorai.010G035600 Gossypium raimondii HOM05D001083 ORTHO05D006562 1.4e-09 66.6 41 80.5
LjContig00408g0023356 Lotus japonicus HOM05D001083 ORTHO05D006562 1.4e-09 66.6 43 74.4
Nitab4.5_0000131g0420 Nicotiana tabacum HOM05D001083 ORTHO05D006562 1.4e-09 66.6 41 80.5
Nitab4.5_0003300g0010 Nicotiana tabacum HOM05D001083 ORTHO05D006562 1.4e-09 66.6 41 80.5
PSO017G5756 Papaver somniferum HOM05D001083 ORTHO05D006562 1.4e-09 66.6 43 76.7
PSO170G6218 Papaver somniferum HOM05D001083 ORTHO05D006562 1.4e-09 66.6 43 76.7
Peaxi162Scf00281g00319 Petunia axillaris HOM05D001083 ORTHO05D006562 1.4e-09 66.6 41 80.5
Solyc04g076090.3 Solanum lycopersicum HOM05D001083 ORTHO05D006562 1.4e-09 66.6 41 80.5
PGSC0003DMG400012910 Solanum tuberosum HOM05D001083 ORTHO05D006562 1.4e-09 66.6 41 80.5
Thecc.08G068600 Theobroma cacao HOM05D001083 ORTHO05D006562 1.4e-09 66.6 41 80.5
TAR381G0639 Trochodendron aralioides HOM05D001083 ORTHO05D006562 1.4e-09 66.6 43 76.7
GSVIVG01009147001 Vitis vinifera HOM05D001083 ORTHO05D006562 1.4e-09 66.6 43 74.4
arahy.Tifrunner.gnm1.ann1.4HU4LR Arachis hypogaea HOM05D001083 ORTHO05D006562 1.8e-09 66.2 41 78.0
arahy.Tifrunner.gnm1.ann1.R1F113 Arachis hypogaea HOM05D001083 ORTHO05D006562 1.8e-09 66.2 41 78.0
BcaC06g32870 Brassica carinata HOM05D001083 ORTHO05D006562 1.8e-09 66.2 43 76.7
BcaC09g50847 Brassica carinata HOM05D001083 ORTHO05D006562 1.8e-09 66.2 43 76.7
BcaNung04959 Brassica carinata HOM05D001083 ORTHO05D006562 1.8e-09 66.2 43 76.7
A01p15970 Brassica napus HOM05D001083 ORTHO05D006562 1.8e-09 66.2 43 76.7
A03p55440 Brassica napus HOM05D001083 ORTHO05D006562 1.8e-09 66.2 43 76.7
C01p19950 Brassica napus HOM05D001083 ORTHO05D006562 1.8e-09 66.2 43 76.7
C07p53730 Brassica napus HOM05D001083 ORTHO05D006562 1.8e-09 66.2 43 76.7
BolC1t01923H Brassica oleracea HOM05D001083 ORTHO05D006562 1.8e-09 66.2 43 76.7
BolC7t45864H Brassica oleracea HOM05D001083 ORTHO05D006562 1.8e-09 66.2 43 76.7
BraA01t01531Z Brassica rapa HOM05D001083 ORTHO05D006562 1.8e-09 66.2 43 76.7
BraA03t14618Z Brassica rapa HOM05D001083 ORTHO05D006562 1.8e-09 66.2 43 76.7
Carub.0007s1644 Capsella rubella HOM05D001083 ORTHO05D006562 1.8e-09 66.2 43 76.7
CARHR232010 Cardamine hirsuta HOM05D001083 ORTHO05D006562 1.8e-09 66.2 43 76.7
Dinv42631 Davidia involucrata HOM05D001083 ORTHO05D006562 1.8e-09 66.2 43 79.1
Dinv44842 Davidia involucrata HOM05D001083 ORTHO05D006562 1.8e-09 66.2 43 79.1
Thhalv10024695m.g Eutrema salsugineum HOM05D001083 ORTHO05D006562 1.8e-09 66.2 43 76.7
Glyma.04G092400 Glycine max HOM05D001083 ORTHO05D006562 1.8e-09 66.2 41 78.0
Glyma.06G094300 Glycine max HOM05D001083 ORTHO05D006562 1.8e-09 66.2 41 78.0
Gohir.A05G220900 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.8e-09 66.2 41 78.0
Gohir.D05G223666 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.8e-09 66.2 41 78.0
Gorai.009G230800 Gossypium raimondii HOM05D001083 ORTHO05D006562 1.8e-09 66.2 41 78.0
Lj1g0024653 Lotus japonicus HOM05D001083 ORTHO05D006562 1.8e-09 66.2 41 78.0
Lalb_Chr08g0242431 Lupinus albus HOM05D001083 ORTHO05D006562 1.8e-09 66.2 41 78.0
Lalb_Chr11g0065091 Lupinus albus HOM05D001083 ORTHO05D006562 1.8e-09 66.2 41 78.0
Phvul.008G180200 Phaseolus vulgaris HOM05D001083 ORTHO05D006562 1.8e-09 66.2 41 78.0
Phvul.009G143550 Phaseolus vulgaris HOM05D001083 ORTHO05D006562 1.8e-09 66.2 41 78.0
Sabra02G0081500 Salix brachista HOM05D001083 ORTHO05D006562 1.8e-09 66.2 43 79.1
Sp7g22610 Schrenkiella parvula HOM05D001083 ORTHO05D006562 1.8e-09 66.2 43 76.7
VMungo0647G1287 Vigna mungo HOM05D001083 ORTHO05D006562 1.8e-09 66.2 41 78.0
VMungo1309G2048 Vigna mungo HOM05D001083 ORTHO05D006562 1.8e-09 66.2 41 78.0
Aa31LG4G9700 Aethionema arabicum HOM05D001083 ORTHO05D006562 2.3e-09 65.9 43 74.4
Nn1g05517 Nelumbo nucifera HOM05D001083 ORTHO05D006562 2.3e-09 65.9 43 76.7
RcHm_v2.0_Chr7g0237251 Rosa chinensis HOM05D001083 ORTHO05D006562 2.3e-09 65.9 43 74.4
Lj4C734G7 Lonicera japonica HOM05D001083 ORTHO05D006562 3.1e-09 65.5 42 76.2
Manes.02G146400 Manihot esculenta HOM05D001083 ORTHO05D006562 3.1e-09 65.5 43 74.4
Manes.18G060600 Manihot esculenta HOM05D001083 ORTHO05D006562 3.1e-09 65.5 43 76.7
RcHm_v2.0_Chr7g0237271 Rosa chinensis HOM05D001083 ORTHO05D026514 3.1e-09 65.5 43 74.4
RcHm_v2.0_Chr7g0237311 Rosa chinensis HOM05D001083 ORTHO05D006562 3.1e-09 65.5 43 74.4
Sopen00g007090 Solanum pennellii HOM05D001083 ORTHO05D006562 3.1e-09 65.5 39 82.1
SGA_v2.0_scaffold28G11891 Striga asiatica HOM05D001083 ORTHO05D006562 3.1e-09 65.5 41 75.6
Actinidia29614 Actinidia chinensis HOM05D001083 ORTHO05D006562 4.0e-09 65.1 46 73.9
MD08G1194100 Malus domestica HOM05D001083 ORTHO05D006562 4.0e-09 65.1 43 74.4
TWI12G0831 Tripterygium wilfordii HOM05D001083 ORTHO05D006562 4.0e-09 65.1 43 76.7
TAR381G1629 Trochodendron aralioides HOM05D001083 ORTHO05D006562 4.0e-09 65.1 43 74.4
SMO115G0176 Selaginella moellendorffii HOM05D001083 ORTHO05D006562 5.2e-09 64.7 43 79.1
Glyma.02G212600 Glycine max HOM05D001083 ORTHO05D006562 6.8e-09 64.3 41 75.6
Os09g0465600 Oryza sativa ssp. japonica HOM05D001083 ORTHO05D006562 6.8e-09 64.3 43 74.4
unitig_578.g16183 Utricularia gibba HOM05D001083 ORTHO05D006562 6.8e-09 64.3 41 80.5
HPP92_024674 Vanilla planifolia HOM05D001083 ORTHO05D006562 6.8e-09 64.3 41 75.6
Zm00001eb315420 Zea mays HOM05D001083 ORTHO05D006562 6.8e-09 64.3 43 74.4
SGA_v2.0_scaffold48G17819 Striga asiatica HOM05D001083 ORTHO05D006562 1.2e-08 63.5 35 88.6
Zm00001eb101090 Zea mays HOM05D001083 ORTHO05D006562 1.2e-08 63.5 42 76.2
Duzib041G0775 Durio zibethinus HOM05D001083 ORTHO05D006562 3.4e-08 62.0 42 78.6
RcHm_v2.0_Chr6g0245801 Rosa chinensis HOM05D001083 ORTHO05D026514 7.5e-08 60.8 39 74.4
RcHm_v2.0_Chr5g0052031 Rosa chinensis HOM05D001083 ORTHO05D026514 1.7e-07 59.7 49 65.3
Glyma.06G093000 Glycine max HOM05D001083 ORTHO05D006562 2.4e-06 55.8 36 75.0
SHI06379 Sapria himalayana HOM05D001083 ORTHO05D006562 5.4e-06 54.7 36 75.0
Pp3c16_3900 Physcomitrium patens HOM05D001083 ORTHO05D006562 9.2e-06 53.9 38 65.8


User provided reference genes

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