Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 1.7e-109 399.4 209 100.0
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 1.7e-61 240.0 218 66.1
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 8.6e-58 227.6 213 65.3
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 2.3e-55 219.5 213 64.3
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 4.8e-40 168.7 212 50.5
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 5.8e-38 161.8 209 49.3
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 8.4e-37 157.9 213 50.7
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.4e-36 157.1 203 47.3
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 7.1e-36 154.8 212 47.6
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 7.1e-36 154.8 204 49.0
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 1.2e-35 154.1 214 47.2
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 2.7e-35 152.9 208 46.2
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 4.6e-35 152.1 211 48.3
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 1.0e-34 151.0 209 46.9
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 1.3e-34 150.6 215 48.4
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 3.0e-34 149.4 209 46.9
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 6.6e-34 148.3 210 46.2
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 1.5e-33 147.1 214 44.9
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 1.5e-33 147.1 211 44.5
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 3.3e-33 146.0 213 46.9
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 9.6e-33 144.4 214 45.8
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 9.6e-33 144.4 203 46.8
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 1.3e-32 144.1 211 46.4
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.1e-32 143.3 212 45.8
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 2.1e-32 143.3 207 44.0
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 2.8e-32 142.9 215 45.1
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 4.8e-32 142.1 207 45.4
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 6.2e-32 141.7 213 45.5
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 6.2e-32 141.7 210 47.1
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 8.1e-32 141.4 213 46.0
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 1.1e-31 141.0 210 45.7
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 1.8e-31 140.2 208 45.7
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 2.4e-31 139.8 211 44.1
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 2.4e-31 139.8 205 46.3
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 3.1e-31 139.4 210 46.2
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 3.1e-31 139.4 210 46.2
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 6.9e-31 138.3 208 46.2
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 2.0e-30 136.7 223 41.3
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 2.0e-30 136.7 204 44.6
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 4.5e-30 135.6 212 43.9
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 5.8e-30 135.2 206 46.6
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 5.8e-30 135.2 211 46.9
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 1.3e-29 134.0 204 45.1
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 1.3e-29 134.0 216 42.6
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.7e-29 133.7 212 45.8
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 2.2e-29 133.3 211 42.7
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 2.9e-29 132.9 210 43.8
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 2.9e-29 132.9 208 44.7
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 3.8e-29 132.5 215 42.3
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 4.9e-29 132.1 208 47.1
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 6.4e-29 131.7 216 42.1
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 8.4e-29 131.3 211 42.2
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 1.1e-28 131.0 208 45.7
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 1.1e-28 131.0 227 39.6
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 1.4e-28 130.6 211 42.7
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 1.4e-28 130.6 207 43.0
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.4e-28 130.6 210 44.8
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 1.4e-28 130.6 212 43.4
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 1.9e-28 130.2 207 43.0
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 2.4e-28 129.8 213 42.3
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 2.4e-28 129.8 218 43.6
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 3.2e-28 129.4 214 43.5
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 7.1e-28 128.3 173 48.6
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 9.3e-28 127.9 212 42.0
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 1.6e-27 127.1 207 42.0
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 1.6e-27 127.1 214 45.8
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 2.1e-27 126.7 218 45.4
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 2.1e-27 126.7 205 41.5
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 2.7e-27 126.3 211 41.7
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 2.7e-27 126.3 211 41.7
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 2.7e-27 126.3 211 41.7
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 2.7e-27 126.3 245 38.0
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 4.6e-27 125.6 208 42.3
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 6.0e-27 125.2 222 42.3
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 6.0e-27 125.2 208 41.3
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 1.3e-26 124.0 218 39.4
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 2.3e-26 123.2 212 43.9
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 3.0e-26 122.9 211 45.5
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.0e-26 122.9 215 41.4
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 3.0e-26 122.9 202 42.6
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 3.9e-26 122.5 207 42.5
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 3.9e-26 122.5 215 41.4
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 5.1e-26 122.1 207 42.0
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.1e-26 122.1 215 40.9
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 6.7e-26 121.7 211 41.2
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 6.7e-26 121.7 216 39.8
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 1.1e-25 120.9 214 43.0
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.9e-25 120.2 211 41.2
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 2.5e-25 119.8 220 40.0
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 2.5e-25 119.8 241 34.9
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 2.5e-25 119.8 208 39.9
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 3.3e-25 119.4 210 42.4
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 3.3e-25 119.4 207 39.6
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 3.3e-25 119.4 194 41.2
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 4.3e-25 119.0 203 42.9
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 5.6e-25 118.6 217 38.7
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 7.4e-25 118.2 212 40.1
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 1.3e-24 117.5 214 38.8
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 1.6e-24 117.1 186 45.2
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 1.6e-24 117.1 213 40.4
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 2.8e-24 116.3 205 40.0
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 6.2e-24 115.2 206 40.3
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 1.1e-23 114.4 195 41.5
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 1.8e-23 113.6 170 48.2
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.0e-23 112.5 211 42.7
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 6.9e-23 111.7 189 41.8
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 9.0e-23 111.3 211 42.7
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.2e-22 110.9 211 42.7
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.5e-22 110.5 200 37.5
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.0e-22 110.2 215 38.6
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 4.5e-22 109.0 201 38.3
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 4.5e-22 109.0 198 42.9
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 5.8e-22 108.6 206 38.3
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 1.0e-21 107.8 200 37.0
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.0e-21 107.8 209 39.7
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 1.3e-21 107.5 229 37.6
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 1.7e-21 107.1 203 36.9
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 1.7e-21 107.1 203 36.9
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 1.7e-21 107.1 203 36.9
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 4.9e-21 105.5 207 37.7
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 4.9e-21 105.5 209 39.2
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 6.5e-21 105.1 186 40.3
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 8.4e-21 104.8 219 34.7
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 8.4e-21 104.8 201 38.3
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 1.1e-20 104.4 200 36.0
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 1.1e-20 104.4 191 39.8
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.1e-20 104.4 211 40.3
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.1e-20 104.4 211 40.3
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 1.1e-20 104.4 209 39.2
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.2e-20 102.8 211 39.8
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 4.2e-20 102.4 196 35.7
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 5.5e-20 102.1 186 39.8
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 7.1e-20 101.7 192 35.9
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.2e-19 100.9 211 37.9
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.2e-19 100.9 191 38.7
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.6e-19 100.5 210 37.6
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 3.5e-19 99.4 203 36.5
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 6.0e-19 98.6 190 38.9
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 6.0e-19 98.6 190 38.9
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 2.3e-18 96.7 220 37.7
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.0e-18 96.3 190 36.3
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 3.9e-18 95.9 190 37.4
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 3.9e-18 95.9 190 37.4
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 3.9e-18 95.9 75 65.3
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 5.1e-18 95.5 218 39.9
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 8.7e-18 94.7 208 35.1
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 1.1e-17 94.4 236 34.3
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 3.3e-17 92.8 160 40.0
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 9.6e-17 91.3 187 36.4
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 9.6e-17 91.3 102 53.9
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 2.1e-16 90.1 208 35.1
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 3.7e-16 89.4 191 36.6
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 4.8e-16 89.0 191 37.2
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 4.8e-16 89.0 213 33.8
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 4.0e-15 85.9 224 34.4
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.0e-13 81.3 210 29.5
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 2.2e-13 80.1 220 29.5
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 5.0e-13 79.0 210 30.5
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 5.0e-13 79.0 135 40.7
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 8.4e-13 78.2 193 38.3
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 4.6e-11 72.4 78 56.4
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 3.0e-10 69.7 194 34.0
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 2.2e-08 63.5 55 58.2
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 2.2e-08 63.5 207 29.5
Os02g0505500 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 8.2e-08 61.6 43 65.1
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 1.1e-07 61.2 205 32.2
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.4e-07 60.8 89 42.7
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 1.4e-07 60.8 54 53.7
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 4.1e-07 59.3 189 32.3
Os09g0511300 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 4.1e-07 59.3 192 22.9
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.2e-06 57.8 206 30.6
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.5e-06 57.4 199 29.6
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 1.5e-06 57.4 91 40.7


User provided reference genes

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