Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g104050 Amaranthus hybridus HOM05D006927 ORTHO05D009065 8.6e-187 656.8 314 100.0
FAN03G0521 Fragaria x ananassa HOM05D006927 ORTHO05D009065 3.1e-120 435.6 304 66.8
AL6G28760 Arabidopsis lyrata HOM05D006927 ORTHO05D009065 4.5e-119 431.8 305 67.5
Gorai.007G250200 Gossypium raimondii HOM05D006927 ORTHO05D009065 4.5e-119 431.8 295 70.5
Gohir.A11G224222 Gossypium hirsutum HOM05D006927 ORTHO05D009065 5.9e-119 431.4 297 69.7
Eucgr.D01080 Eucalyptus grandis HOM05D006927 ORTHO05D009065 1.0e-118 430.6 279 73.1
FvH4_7g08340 Fragaria vesca HOM05D006927 ORTHO05D009065 1.3e-118 430.3 304 66.1
Duzib177G0162 Durio zibethinus HOM05D006927 ORTHO05D009065 2.2e-118 429.5 291 70.4
Prupe.2G106800 Prunus persica HOM05D006927 ORTHO05D009065 2.9e-118 429.1 295 67.8
GSVIVG01019324001 Vitis vinifera HOM05D006927 ORTHO05D009065 2.9e-118 429.1 292 70.2
QL04p053394 Quercus lobata HOM05D006927 ORTHO05D009065 3.8e-118 428.7 290 70.3
RcHm_v2.0_Chr1g0340711 Rosa chinensis HOM05D006927 ORTHO05D009065 5.0e-118 428.3 285 69.1
AT5G17670 Arabidopsis thaliana HOM05D006927 ORTHO05D009065 8.5e-118 427.6 302 67.9
Sp6g26550 Schrenkiella parvula HOM05D006927 ORTHO05D009065 1.5e-117 426.8 311 66.9
Potri.013G070700 Populus trichocarpa HOM05D006927 ORTHO05D009065 3.2e-117 425.6 305 67.5
BcaC03g13532 Brassica carinata HOM05D006927 ORTHO05D009065 5.5e-117 424.9 306 67.0
FAN10G1940 Fragaria x ananassa HOM05D006927 ORTHO05D009065 5.5e-117 424.9 312 64.1
Manes.09G133500 Manihot esculenta HOM05D006927 ORTHO05D009065 7.2e-117 424.5 306 68.3
Sc11g0005590 Simmondsia chinensis HOM05D006927 ORTHO05D009065 7.2e-117 424.5 311 68.8
Thecc.05G234500 Theobroma cacao HOM05D006927 ORTHO05D009065 9.4e-117 424.1 281 71.5
DCAR_001906 Daucus carota HOM05D006927 ORTHO05D009065 2.1e-116 422.9 296 68.2
Carub.0006s1591 Capsella rubella HOM05D006927 ORTHO05D009065 1.4e-115 420.2 312 65.1
FAN06G3009 Fragaria x ananassa HOM05D006927 ORTHO05D009065 4.0e-115 418.7 322 62.4
Migut.B01420 Erythranthe guttata HOM05D006927 ORTHO05D009065 6.8e-115 417.9 288 69.4
Dinv43961 Davidia involucrata HOM05D006927 ORTHO05D009065 8.8e-115 417.5 327 63.9
CSS0031880 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 2.0e-114 416.4 341 62.2
Thhalv10014137m.g Eutrema salsugineum HOM05D006927 ORTHO05D009065 2.0e-114 416.4 313 65.2
SalBow5G1207 Salvia bowleyana HOM05D006927 ORTHO05D009065 2.0e-114 416.4 315 65.7
VMungo0251G3349 Vigna mungo HOM05D006927 ORTHO05D009065 2.0e-114 416.4 280 72.5
C02p09230 Brassica napus HOM05D006927 ORTHO05D009065 2.6e-114 416.0 310 65.5
Lj1g0006598 Lotus japonicus HOM05D006927 ORTHO05D009065 4.4e-114 415.2 283 69.6
A02p04400 Brassica napus HOM05D006927 ORTHO05D009065 7.5e-114 414.5 311 65.3
CSS0044270 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 7.5e-114 414.5 341 62.5
MD07G1081500 Malus domestica HOM05D006927 ORTHO05D009065 1.7e-113 413.3 276 69.9
Peaxi162Scf00907g00025 Petunia axillaris HOM05D006927 ORTHO05D009065 1.7e-113 413.3 314 64.6
THA.LOC104820815 Tarenaya hassleriana HOM05D006927 ORTHO05D009065 2.2e-113 412.9 310 65.2
Cc02_g26470 Coffea canephora HOM05D006927 ORTHO05D009065 2.8e-113 412.5 285 69.5
Nitab4.5_0000792g0130 Nicotiana tabacum HOM05D006927 ORTHO05D009065 6.3e-113 411.4 288 67.4
Os02g0129900 Oryza sativa ssp. japonica HOM05D006927 ORTHO05D009065 1.1e-112 410.6 305 66.9
Nitab4.5_0006785g0060 Nicotiana tabacum HOM05D006927 ORTHO05D009065 1.8e-112 409.8 289 68.9
Cpa.g.sc73.27 Carica papaya HOM05D006927 ORTHO05D009065 2.4e-112 409.5 300 66.7
Solyc01g081480.3 Solanum lycopersicum HOM05D006927 ORTHO05D009065 3.1e-112 409.1 293 67.2
Sopen01g033040 Solanum pennellii HOM05D006927 ORTHO05D009065 4.1e-112 408.7 293 67.6
Medtr3g118320 Medicago truncatula HOM05D006927 ORTHO05D009065 5.4e-112 408.3 301 65.8
TWI34G1327 Tripterygium wilfordii HOM05D006927 ORTHO05D009065 9.1e-112 407.5 297 65.3
PGR083G0610 Punica granatum HOM05D006927 ORTHO05D009065 1.2e-111 407.1 288 68.1
Zm00001eb208940 Zea mays HOM05D006927 ORTHO05D009065 1.6e-111 406.8 308 66.6
Ciclev10032190m.g Citrus clementina HOM05D006927 ORTHO05D009065 1.0e-110 404.1 292 66.4
Aa31LG11G11960 Aethionema arabicum HOM05D006927 ORTHO05D009065 1.7e-110 403.3 339 59.9
Glyma.06G001500 Glycine max HOM05D006927 ORTHO05D009065 2.2e-110 402.9 301 67.1
PGSC0003DMG400031110 Solanum tuberosum HOM05D006927 ORTHO05D009065 2.9e-110 402.5 293 65.2
CANSAT25G2771 Cannabis sativa HOM05D006927 ORTHO05D009065 1.5e-109 400.2 274 67.9
Aqoxy1G00986 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 1.9e-109 399.8 308 64.0
ATR0568G108 Amborella trichopoda HOM05D006927 ORTHO05D009065 2.5e-109 399.4 274 68.2
Lsat_1_v5_gn_1_89341 Lactuca sativa HOM05D006927 ORTHO05D009065 2.5e-109 399.4 317 62.5
Phvul.002G317100 Phaseolus vulgaris HOM05D006927 ORTHO05D009065 2.5e-109 399.4 276 71.0
Rhsim07G0047700 Rhododendron simsii HOM05D006927 ORTHO05D009065 3.2e-109 399.1 360 58.3
CsaV3_6G006390 Cucumis sativus L. HOM05D006927 ORTHO05D009065 5.5e-109 398.3 306 65.0
MELO3C022480.2 Cucumis melo HOM05D006927 ORTHO05D009065 9.4e-109 397.5 306 65.4
TPR.G38566 Trifolium pratense HOM05D006927 ORTHO05D009065 1.2e-108 397.1 298 66.1
CAN.G992.25 Capsicum annuum HOM05D006927 ORTHO05D009065 1.6e-108 396.7 286 65.4
TAR629G3441 Trochodendron aralioides HOM05D006927 ORTHO05D009065 1.6e-108 396.7 277 66.8
Haze_15787 Corylus avellana HOM05D006927 ORTHO05D009065 4.7e-108 395.2 305 66.6
HanXRQChr01g0018481 Helianthus annuus HOM05D006927 ORTHO05D009065 8.0e-108 394.4 298 65.1
arahy.Tifrunner.gnm1.ann1.DTN3WJ Arachis hypogaea HOM05D006927 ORTHO05D009065 2.3e-107 392.9 304 64.1
Lj9A617T58 Lonicera japonica HOM05D006927 ORTHO05D009065 2.3e-107 392.9 274 67.5
Atru.chr2.1634 Acer truncatum HOM05D006927 ORTHO05D009065 3.0e-107 392.5 327 59.0
MBI04_g06278_MAGBIO Magnolia biondii HOM05D006927 ORTHO05D009065 5.2e-107 391.7 275 68.7
arahy.Tifrunner.gnm1.ann1.A7PVHI Arachis hypogaea HOM05D006927 ORTHO05D009065 8.8e-107 391.0 302 65.2
Sed0018978 Sechium edule HOM05D006927 ORTHO05D009065 2.2e-105 386.3 282 64.9
ECA248G1152 Erigeron canadensis HOM05D006927 ORTHO05D009065 1.4e-104 383.6 274 66.4
COL.COLO4_21417 Corchorus olitorius HOM05D006927 ORTHO05D009065 2.0e-103 379.8 270 68.9
PSO675G5316 Papaver somniferum HOM05D006927 ORTHO05D009065 1.9e-101 373.2 310 61.0
Ca_15418_v3 Cicer arietinum L. HOM05D006927 ORTHO05D009065 3.3e-101 372.5 296 62.8
ClCG06G000620 Citrullus lanatus HOM05D006927 ORTHO05D009065 5.6e-101 371.7 330 58.5
vmacro13598 Vaccinium macrocarpon HOM05D006927 ORTHO05D009065 6.8e-99 364.8 443 46.5
SGA_v2.0_scaffold98G29375 Striga asiatica HOM05D006927 ORTHO05D009065 2.9e-97 359.4 310 59.0
Lalb_Chr08g0246751 Lupinus albus HOM05D006927 ORTHO05D009065 8.3e-97 357.8 275 62.5
CDE02G0279 Ceratophyllum demersum HOM05D006927 ORTHO05D009065 1.7e-94 350.1 294 57.5
FAN01G0804 Fragaria x ananassa HOM05D006927 ORTHO05D009065 3.9e-94 349.0 298 59.1
Mapoly0110s0034 Marchantia polymorpha HOM05D006927 ORTHO05D009065 1.1e-93 347.4 289 60.2
AagrBONN_evm.TU.Sc2ySwM_228.4179 Anthoceros agrestis HOM05D006927 ORTHO05D009065 2.8e-92 342.8 300 55.3
Pp3c20_10810 Physcomitrium patens HOM05D006927 ORTHO05D009065 3.6e-92 342.4 311 54.7
MD02G1231900 Malus domestica HOM05D006927 ORTHO05D009065 7.8e-87 324.7 249 64.3
Sabra13G0061600 Salix brachista HOM05D006927 ORTHO05D009065 3.1e-83 312.8 340 50.6
SMO141G0137 Selaginella moellendorffii HOM05D006927 ORTHO05D009065 6.8e-83 311.6 279 55.9
Psat5g000960 Pisum sativum HOM05D006927 ORTHO05D009065 5.8e-82 308.5 249 62.7
Oeu034881.1 Olea europaea HOM05D006927 ORTHO05D009065 1.2e-76 290.8 208 69.2
BolC2t06832H Brassica oleracea HOM05D006927 ORTHO05D009065 1.1e-75 287.7 188 72.3
BraA02t05404Z Brassica rapa HOM05D006927 ORTHO05D009065 1.2e-74 284.3 186 72.0
Nn1g09344 Nelumbo nucifera HOM05D006927 ORTHO05D009065 3.2e-72 276.2 212 63.2
Dinv43521 Davidia involucrata HOM05D006927 ORTHO05D009065 5.4e-72 275.4 165 75.2
Cre07.g313550 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D009065 1.5e-66 257.3 286 44.1
Actinidia31733 Actinidia chinensis HOM05D006927 ORTHO05D009065 2.6e-66 256.5 178 68.0
CiPaw.02G047300 Carya illinoinensis HOM05D006927 ORTHO05D009065 2.6e-66 256.5 162 74.1
MCO09G674 Micromonas commoda HOM05D006927 ORTHO05D009065 3.4e-66 256.1 269 47.6
HPP92_025548 Vanilla planifolia HOM05D006927 ORTHO05D009065 1.3e-62 244.2 177 64.4
Aqoxy116s007 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 4.8e-60 235.7 243 53.1
PRCOL_00002784 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 2.4e-59 233.4 284 43.3
CARHR195510 Cardamine hirsuta HOM05D006927 ORTHO05D009065 1.4e-56 224.2 162 64.2
Gohir.D11G237100 Gossypium hirsutum HOM05D006927 ORTHO05D009065 1.9e-48 197.2 131 72.5
unitig_26.g8847 Utricularia gibba HOM05D006927 ORTHO05D009065 1.8e-46 190.7 155 61.3
MCO02G275 Micromonas commoda HOM05D006927 ORTHO05D044296 1.0e-33 148.3 313 33.5
PRCOL_00000683 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 1.3e-33 147.9 279 37.6
unitig_26.g8846 Utricularia gibba HOM05D006927 ORTHO05D009065 2.5e-32 143.7 93 68.8
Cre01.g025150 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D044296 8.7e-30 135.2 336 31.0
Thecc.05G234900 Theobroma cacao HOM05D006927 ORTHO05D009065 7.7e-26 122.1 60 86.7
Actinidia34774 Actinidia chinensis HOM05D006927 ORTHO05D009065 1.3e-25 121.3 81 64.2
SEGI_38351 Sequoiadendron giganteum HOM05D006927 ORTHO05D009065 1.9e-24 117.5 64 79.7
BcaB08g36753 Brassica carinata HOM05D006927 ORTHO05D009065 2.0e-18 97.4 107 51.4
HPP92_025520 Vanilla planifolia HOM05D006927 ORTHO05D009065 2.6e-18 97.1 156 42.9
AagrBONN_evm.TU.Sc2ySwM_368.1936 Anthoceros agrestis HOM05D006927 ORTHO05D071668 9.4e-16 88.6 251 26.3
PRCOL_00002844 Prasinoderma coloniale HOM05D006927 ORTHO05D049054 3.1e-11 73.6 170 32.4
CBR_g4745 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-10 70.5 68 45.6
MCO12G090 Micromonas commoda HOM05D006927 ORTHO05D049054 8.5e-09 65.5 372 23.1


User provided reference genes

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