Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g103770 Amaranthus hybridus HOM05D005937 ORTHO05D008151 0.0e+00 1744.2 866 100.0
EL10Ac2g04871 Beta vulgaris HOM05D005937 ORTHO05D008151 0.0e+00 1427.2 923 78.3
AUR62012278 Chenopodium quinoa HOM05D005937 ORTHO05D008151 0.0e+00 1332.0 815 80.2
Hund15900 Selenicereus undatus HOM05D005937 ORTHO05D008151 0.0e+00 1321.2 869 75.3
AUR62022920 Chenopodium quinoa HOM05D005937 ORTHO05D008151 0.0e+00 1247.6 734 83.1
GSVIVG01032777001 Vitis vinifera HOM05D005937 ORTHO05D008151 0.0e+00 1182.9 873 67.5
Atru.chr12.85 Acer truncatum HOM05D005937 ORTHO05D008151 0.0e+00 1168.3 875 66.2
CiPaw.02G194600 Carya illinoinensis HOM05D005937 ORTHO05D008151 0.0e+00 1165.2 866 66.6
Duzib114G0783 Durio zibethinus HOM05D005937 ORTHO05D008151 0.0e+00 1152.9 883 66.5
FvH4_7g24830 Fragaria vesca HOM05D005937 ORTHO05D008151 0.0e+00 1149.4 814 66.7
FAN01G2918 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1146.3 814 66.6
Haze_17256 Corylus avellana HOM05D005937 ORTHO05D008151 0.0e+00 1144.4 821 68.2
FAN06G2004 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1143.3 814 66.5
TWI09G1402 Tripterygium wilfordii HOM05D005937 ORTHO05D008151 0.0e+00 1142.9 857 65.5
TAR633G1521 Trochodendron aralioides HOM05D005937 ORTHO05D008151 0.0e+00 1142.1 877 65.5
Hma1.2p1_0523F.1_g172080 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 0.0e+00 1141.3 810 68.5
RcHm_v2.0_Chr1g0370701 Rosa chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1140.6 851 65.5
Potri.010G185800 Populus trichocarpa HOM05D005937 ORTHO05D008151 0.0e+00 1140.2 880 65.2
Eucgr.J00183 Eucalyptus grandis HOM05D005937 ORTHO05D008151 0.0e+00 1133.6 817 68.3
Manes.10G010100 Manihot esculenta HOM05D005937 ORTHO05D008151 0.0e+00 1128.6 883 65.0
Thecc.10G012700 Theobroma cacao HOM05D005937 ORTHO05D008151 0.0e+00 1126.3 815 67.7
MD07G1224900 Malus domestica HOM05D005937 ORTHO05D008151 0.0e+00 1125.9 815 66.7
CSS0046957 Camellia sinensis var. sinensis HOM05D005937 ORTHO05D008151 0.0e+00 1122.5 893 64.3
Prupe.2G253500 Prunus persica HOM05D005937 ORTHO05D008151 0.0e+00 1121.7 852 64.9
Nitab4.5_0000058g0250 Nicotiana tabacum HOM05D005937 ORTHO05D008151 0.0e+00 1120.9 872 64.2
FAN03G2902 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1118.2 830 64.8
Actinidia00667 Actinidia chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1112.8 852 65.4
CANSAT56G2579 Cannabis sativa HOM05D005937 ORTHO05D008151 0.0e+00 1111.3 821 66.1
QL08p063536 Quercus lobata HOM05D005937 ORTHO05D008151 0.0e+00 1110.9 876 64.4
Migut.F01477 Erythranthe guttata HOM05D005937 ORTHO05D008151 0.0e+00 1108.2 874 63.7
Gorai.011G291300 Gossypium raimondii HOM05D005937 ORTHO05D008151 0.0e+00 1107.0 833 65.4
Ca_15144_v3 Cicer arietinum L. HOM05D005937 ORTHO05D008151 0.0e+00 1106.7 827 65.5
Rhsim09G0179300 Rhododendron simsii HOM05D005937 ORTHO05D008151 0.0e+00 1106.3 828 66.5
Ciclev10030686m.g Citrus clementina HOM05D005937 ORTHO05D008151 0.0e+00 1104.4 854 64.6
Phvul.001G244900 Phaseolus vulgaris HOM05D005937 ORTHO05D008151 0.0e+00 1103.6 822 65.1
Nitab4.5_0000969g0030 Nicotiana tabacum HOM05D005937 ORTHO05D008151 0.0e+00 1101.7 874 63.3
AL5G37310 Arabidopsis lyrata HOM05D005937 ORTHO05D008151 0.0e+00 1097.8 872 62.7
CsaV3_6G001960 Cucumis sativus L. HOM05D005937 ORTHO05D008151 0.0e+00 1097.8 818 65.4
ClCG11G006010 Citrullus lanatus HOM05D005937 ORTHO05D008151 0.0e+00 1095.5 818 65.3
Sp5g06500 Schrenkiella parvula HOM05D005937 ORTHO05D008151 0.0e+00 1095.1 873 62.3
Gohir.A10G239000 Gossypium hirsutum HOM05D005937 ORTHO05D008151 0.0e+00 1094.7 836 65.0
Nn2g10945 Nelumbo nucifera HOM05D005937 ORTHO05D008151 0.0e+00 1094.0 860 63.4
AT3G56040 Arabidopsis thaliana HOM05D005937 ORTHO05D008151 0.0e+00 1089.7 867 62.1
Sabra10G0143100 Salix brachista HOM05D005937 ORTHO05D008151 0.0e+00 1089.3 928 60.2
Lalb_Chr23g0277021 Lupinus albus HOM05D005937 ORTHO05D008151 0.0e+00 1084.7 899 60.5
Thhalv10005783m.g Eutrema salsugineum HOM05D005937 ORTHO05D008151 0.0e+00 1084.3 887 60.9
CAN.G19.18 Capsicum annuum HOM05D005937 ORTHO05D008151 0.0e+00 1083.6 865 62.5
Medtr3g071440 Medicago truncatula HOM05D005937 ORTHO05D008151 0.0e+00 1082.4 869 62.6
Aa31LG10G10960 Aethionema arabicum HOM05D005937 ORTHO05D008151 0.0e+00 1081.2 866 61.2
Glyma.11G231700 Glycine max HOM05D005937 ORTHO05D008151 0.0e+00 1079.7 824 64.7
A09p48990 Brassica napus HOM05D005937 ORTHO05D008151 0.0e+00 1078.9 885 61.9
BraA09t40354Z Brassica rapa HOM05D005937 ORTHO05D008151 0.0e+00 1078.9 885 61.9
Cpa.g.sc19.149 Carica papaya HOM05D005937 ORTHO05D008151 0.0e+00 1077.4 897 61.6
Psat5g130440 Pisum sativum HOM05D005937 ORTHO05D008151 5.9e-312 1074.7 819 64.7
Carub.0005s2277 Capsella rubella HOM05D005937 ORTHO05D008151 5.9e-312 1073.9 865 61.0
C08p31350 Brassica napus HOM05D005937 ORTHO05D008151 1.2e-311 1073.2 885 61.5
Sopen06g016900 Solanum pennellii HOM05D005937 ORTHO05D008151 3.0e-311 1071.6 855 62.3
vmacro10023 Vaccinium macrocarpon HOM05D005937 ORTHO05D008151 4.1e-311 1071.2 889 62.2
CARHR166110 Cardamine hirsuta HOM05D005937 ORTHO05D008151 7.1e-311 1070.5 865 61.8
Duzib106G1087 Durio zibethinus HOM05D005937 ORTHO05D008151 2.6e-310 1068.5 887 62.3
arahy.Tifrunner.gnm1.ann1.6RBS9T Arachis hypogaea HOM05D005937 ORTHO05D008151 7.6e-310 1067.0 820 63.2
Solyc06g051080.4 Solanum lycopersicum HOM05D005937 ORTHO05D008151 7.6e-310 1067.0 879 61.3
arahy.Tifrunner.gnm1.ann1.0WF02T Arachis hypogaea HOM05D005937 ORTHO05D008151 1.0e-309 1066.6 820 63.2
Oeu011112.1 Olea europaea HOM05D005937 ORTHO05D008151 1.7e-309 1065.8 947 58.8
THA.LOC104811372 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 5.0e-309 1064.3 844 62.7
Glyma.18G025500 Glycine max HOM05D005937 ORTHO05D008151 6.5e-309 1063.9 837 62.8
Aqoxy4G02431 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 8.4e-309 1063.5 815 64.3
Sed0020446 Sechium edule HOM05D005937 ORTHO05D008151 1.1e-308 1063.1 828 63.5
Lj6g0019628 Lotus japonicus HOM05D005937 ORTHO05D008151 3.2e-308 1061.6 844 64.2
THA.LOC104824329 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 4.2e-308 1061.2 865 61.4
TPR.G10616 Trifolium pratense HOM05D005937 ORTHO05D008151 2.7e-307 1058.5 817 63.6
HanXRQChr07g0203141 Helianthus annuus HOM05D005937 ORTHO05D008151 8.7e-306 1053.5 890 60.6
Lsat_1_v5_gn_2_123720 Lactuca sativa HOM05D005937 ORTHO05D008151 1.1e-305 1053.1 856 62.1
VMungo1383G1379 Vigna mungo HOM05D005937 ORTHO05D008151 1.9e-305 1052.4 863 61.9
Lj1C959G18 Lonicera japonica HOM05D005937 ORTHO05D008151 9.7e-305 1050.0 748 67.6
DCAR_024814 Daucus carota HOM05D005937 ORTHO05D008151 3.7e-304 1048.1 798 65.8
PSO017G4998 Papaver somniferum HOM05D005937 ORTHO05D008151 6.3e-304 1047.3 828 62.9
Dinv21757 Davidia involucrata HOM05D005937 ORTHO05D008151 1.1e-303 1046.6 883 62.2
PSO170G3027 Papaver somniferum HOM05D005937 ORTHO05D008151 9.0e-303 1043.5 837 62.4
ECA238G3710 Erigeron canadensis HOM05D005937 ORTHO05D008151 1.6e-299 1032.7 831 62.6
FAN10G1632 Fragaria x ananassa HOM05D005937 ORTHO05D008151 8.8e-298 1026.9 826 60.0
PGR044G1548 Punica granatum HOM05D005937 ORTHO05D008151 6.5e-293 1010.7 833 62.8
Cfa001293 Carpinus fangiana HOM05D005937 ORTHO05D008151 7.4e-289 997.3 694 68.7
unitig_60.g25670 Utricularia gibba HOM05D005937 ORTHO05D008151 5.3e-287 991.1 829 59.7
ATR0174G021 Amborella trichopoda HOM05D005937 ORTHO05D008151 1.1e-284 983.4 856 56.8
Os05g0468600 Oryza sativa ssp. japonica HOM05D005937 ORTHO05D008151 3.1e-279 965.3 797 58.1
Cc02_g06180 Coffea canephora HOM05D005937 ORTHO05D008151 3.2e-276 955.3 639 71.0
Peaxi162Scf00284g00620 Petunia axillaris HOM05D005937 ORTHO05D008151 3.2e-276 955.3 875 57.4
Gohir.D10G250900 Gossypium hirsutum HOM05D005937 ORTHO05D008151 2.1e-275 952.6 720 66.5
Sc10g0002520 Simmondsia chinensis HOM05D005937 ORTHO05D008151 4.0e-274 948.3 689 70.0
Zm00001eb351780 Zea mays HOM05D005937 ORTHO05D008151 7.0e-271 937.6 847 55.8
MELO3C008313.2 Cucumis melo HOM05D005937 ORTHO05D008151 4.5e-270 934.9 712 66.0
MBI15_g40751_MAGBIO Magnolia biondii HOM05D005937 ORTHO05D008151 7.5e-265 917.5 907 55.0
MD01G1156200 Malus domestica HOM05D005937 ORTHO05D008151 2.0e-262 909.4 697 65.1
COL.COLO4_25772 Corchorus olitorius HOM05D005937 ORTHO05D008151 1.5e-257 893.3 787 59.0
AagrBONN_evm.TU.Sc2ySwM_368.2798 Anthoceros agrestis HOM05D005937 ORTHO05D008151 6.0e-238 828.2 822 50.5
Mapoly0007s0127 Marchantia polymorpha HOM05D005937 ORTHO05D008151 3.4e-233 812.4 861 48.0
SGA_v2.0_scaffold395G50730 Striga asiatica HOM05D005937 ORTHO05D008151 7.6e-233 811.2 737 60.7
SMO141G0067 Selaginella moellendorffii HOM05D005937 ORTHO05D008151 1.4e-226 790.4 747 51.1
Pp3c22_15610 Physcomitrium patens HOM05D005937 ORTHO05D008151 1.1e-223 780.8 878 46.4
HPP92_007567 Vanilla planifolia HOM05D005937 ORTHO05D008151 1.4e-202 710.7 765 50.5
Hma1.2p1_0523F.1_g172070 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 3.9e-189 666.0 510 66.5
CBR_g61489 Chara braunii HOM05D005937 ORTHO05D008151 4.8e-187 659.1 566 54.1
Actinidia00964 Actinidia chinensis HOM05D005937 ORTHO05D008151 2.8e-171 606.7 479 63.3
PRCOL_00004696 Prasinoderma coloniale HOM05D005937 ORTHO05D008151 5.0e-160 569.3 754 41.2
Cre12.g554250 Chlamydomonas reinhardtii HOM05D005937 ORTHO05D008151 5.5e-159 565.8 809 40.7
CDE04G2743 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 5.7e-148 529.3 543 53.8
HPP92_007578 Vanilla planifolia HOM05D005937 ORTHO05D008151 6.8e-117 426.0 399 54.1
RhsimUnG0153700 Rhododendron simsii HOM05D005937 ORTHO05D008151 1.2e-113 415.2 298 67.8
Rhsim12G0073000 Rhododendron simsii HOM05D005937 ORTHO05D008151 1.9e-106 391.3 297 65.3
BcaB01g00040 Brassica carinata HOM05D005937 ORTHO05D008151 3.2e-106 390.6 408 53.4
SEGI_34891 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 9.6e-95 352.4 244 68.9
Aqoxy1G01260 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 9.0e-93 345.9 197 79.2
Aqoxy2G01148 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 9.0e-93 345.9 188 83.0
Aqoxy4G01451 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 5.8e-92 343.2 186 83.3
CDE04G2646 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 2.1e-86 324.7 248 61.3
Ah.00g001390 Amaranthus hybridus HOM05D005937 ORTHO05D008151 2.7e-81 307.8 147 97.3
MCO05G015 Micromonas commoda HOM05D005937 ORTHO05D008151 4.8e-78 297.0 421 39.0
HPP92_007579 Vanilla planifolia HOM05D005937 ORTHO05D008151 1.2e-76 292.4 217 59.4
BolC8t50756H Brassica oleracea HOM05D005937 ORTHO05D008151 1.1e-71 275.8 201 60.7
SEGI_09306 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 4.8e-46 190.7 131 62.6
Aqoxy4G01461 Aquilegia oxysepala HOM05D005937 ORTHO05D026713 1.4e-29 136.0 179 49.7
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 2.9e-27 128.3 165 40.6
Hund15853 Selenicereus undatus HOM05D005937 ORTHO05D026713 1.1e-16 93.2 107 48.6
Aqoxy4G00767 Aquilegia oxysepala HOM05D005937 ORTHO05D026713 1.3e-11 76.3 89 50.6
Rhsim12G0072900 Rhododendron simsii HOM05D005937 ORTHO05D008151 4.7e-09 67.8 53 66.0
SEGI_37602 Sequoiadendron giganteum HOM05D005937 ORTHO05D026713 6.2e-09 67.4 165 30.9


User provided reference genes

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