Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 0.0e+00 1260.0 629 100.0
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 3.8e-266 921.4 637 73.3
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 6.9e-228 794.3 640 65.5
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 7.2e-225 784.3 595 67.9
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 6.1e-200 701.4 635 57.8
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 3.4e-190 669.1 642 55.9
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 4.4e-190 668.7 644 55.7
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 5.7e-190 668.3 647 55.8
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 1.1e-185 654.1 642 54.8
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 4.7e-184 648.7 648 54.2
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 8.0e-184 647.9 644 53.9
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.4e-183 647.1 649 53.9
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 1.4e-183 647.1 643 54.7
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 5.2e-183 645.2 648 54.6
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 2.6e-182 642.9 644 53.9
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.3e-181 640.6 627 54.1
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 1.7e-181 640.2 644 54.0
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 1.9e-180 636.7 642 53.9
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 1.2e-179 634.0 634 53.6
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 1.2e-179 634.0 639 52.4
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.6e-179 633.6 649 53.9
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 2.0e-179 633.3 643 53.2
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 2.0e-179 633.3 634 54.3
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 3.5e-179 632.5 643 52.3
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 6.0e-179 631.7 631 54.5
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 7.8e-179 631.3 645 54.0
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 7.8e-179 631.3 644 53.1
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 7.8e-179 631.3 650 53.1
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 2.3e-178 629.8 645 53.3
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 1.9e-177 626.7 638 52.7
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 2.5e-177 626.3 640 52.3
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 3.3e-177 625.9 576 59.0
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 5.6e-177 625.2 624 55.1
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 6.2e-176 621.7 637 52.1
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 8.1e-176 621.3 651 53.6
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 1.4e-175 620.5 656 51.5
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 1.8e-175 620.2 648 52.6
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 2.3e-175 619.8 633 52.6
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 3.1e-175 619.4 635 52.9
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 4.0e-175 619.0 639 53.2
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 6.8e-175 618.2 628 52.1
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 8.9e-175 617.8 629 52.9
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 2.0e-174 616.7 641 53.2
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 2.6e-174 616.3 638 53.0
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 2.6e-174 616.3 683 51.0
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 3.4e-174 615.9 632 52.2
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 6.4e-173 611.7 641 52.9
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.4e-172 610.5 693 49.6
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 1.4e-172 610.5 632 53.6
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 9.2e-172 607.8 660 51.7
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 4.6e-171 605.5 637 51.8
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.7e-170 603.6 552 60.1
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 5.1e-170 602.1 637 51.5
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 1.5e-169 600.5 644 50.2
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 1.8e-167 593.6 639 50.5
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 4.0e-167 592.4 640 49.7
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 5.2e-167 592.0 604 53.8
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 1.2e-166 590.9 647 52.7
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 3.4e-166 589.3 634 50.9
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 1.3e-165 587.4 655 49.8
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 2.2e-165 586.6 646 50.5
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 2.9e-165 586.3 654 50.0
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 6.4e-165 585.1 641 49.3
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 2.4e-164 583.2 627 49.0
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 7.1e-164 581.6 640 49.5
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 7.1e-164 581.6 629 50.9
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 2.1e-163 580.1 644 49.1
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 3.5e-163 579.3 656 49.7
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.0e-162 577.8 603 52.1
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.3e-162 577.4 628 50.5
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 1.3e-162 577.4 652 49.5
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 1.7e-162 577.0 635 50.1
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 3.0e-162 576.2 645 47.8
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 3.9e-162 575.9 636 49.7
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 3.9e-162 575.9 495 60.8
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 2.5e-161 573.2 619 49.6
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 4.3e-161 572.4 659 49.8
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 5.6e-161 572.0 631 49.3
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 5.6e-161 572.0 646 48.5
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 3.6e-160 569.3 655 47.0
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 5.2e-159 565.5 639 48.2
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 8.9e-159 564.7 623 48.8
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 1.2e-158 564.3 627 49.1
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 2.2e-157 560.1 579 52.5
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 3.8e-157 559.3 578 52.2
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 6.4e-157 558.5 636 48.3
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 8.4e-157 558.1 637 49.3
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 1.9e-156 557.0 630 47.9
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 5.4e-156 555.4 629 48.2
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 5.4e-156 555.4 630 48.1
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 5.4e-156 555.4 629 48.2
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 5.4e-156 555.4 630 48.1
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 5.4e-156 555.4 634 49.7
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 7.1e-156 555.1 629 48.2
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 1.2e-155 554.3 673 47.0
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 1.6e-155 553.9 634 48.3
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 2.1e-155 553.5 639 47.4
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 7.8e-155 551.6 637 50.5
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 1.1e-153 547.7 628 47.8
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 1.1e-153 547.7 536 55.0
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 7.3e-153 545.0 602 51.2
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 2.1e-152 543.5 630 48.1
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 6.2e-152 542.0 534 53.9
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 1.8e-151 540.4 500 56.4
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 1.8e-151 540.4 652 47.9
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.4e-151 540.0 571 51.0
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.6e-150 536.6 707 46.1
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 5.8e-150 535.4 604 46.7
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 1.7e-149 533.9 644 49.2
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 6.4e-149 531.9 593 48.9
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 2.4e-148 530.0 665 46.5
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 5.4e-148 528.9 558 50.0
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 7.1e-148 528.5 573 50.3
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 1.0e-146 524.6 490 54.3
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 4.3e-145 519.2 665 46.6
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 1.8e-143 513.8 586 46.8
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 2.0e-142 510.4 614 48.4
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 4.5e-142 509.2 539 49.9
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 1.7e-141 507.3 533 51.0
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 8.4e-141 505.0 655 45.8
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.1e-140 504.6 528 52.7
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 9.3e-140 501.5 489 53.2
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 3.7e-136 489.6 628 44.9
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 4.3e-129 466.1 634 43.2
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 6.1e-123 445.7 529 47.1
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.0e-117 428.3 434 52.3
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.0e-117 428.3 477 47.4
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.0e-117 428.3 477 47.4
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 1.4e-114 417.9 626 39.9
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 2.0e-113 414.1 633 40.6
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 3.7e-112 409.8 626 39.9
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 2.4e-111 407.1 479 47.2
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 2.0e-110 404.1 479 47.0
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 5.7e-105 386.0 379 53.0
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 5.9e-102 375.9 523 44.0
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 8.8e-98 362.1 638 38.4
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 2.1e-91 340.9 626 36.3
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 1.0e-77 295.4 514 37.4
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 3.0e-74 283.9 553 35.1
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.3e-56 225.3 293 44.4
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 6.4e-56 223.0 366 39.1
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 8.1e-51 206.1 167 57.5
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 4.2e-47 193.7 195 47.2
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 1.2e-43 182.2 114 71.9
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 3.7e-27 127.5 185 36.8
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 1.9e-20 105.1 62 75.8
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 6.5e-16 90.1 158 39.9
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 4.5e-09 67.4 39 76.9
Ah.10g036520 Amaranthus hybridus HOM05D004604 ORTHO05D061271 7.2e-07 60.1 45 68.9
CDE04G1491 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 9.4e-07 59.7 57 45.6
CARHR207570 Cardamine hirsuta HOM05D004604 ORTHO05D116251 4.6e-06 57.4 49 65.3


User provided reference genes

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