Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 3.0e-268 927.9 469 100.0
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 8.2e-242 840.1 464 88.6
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 4.1e-225 784.6 461 83.3
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 2.3e-223 778.9 462 83.1
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 1.9e-214 749.2 461 79.4
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 7.1e-169 597.8 466 65.2
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.1e-161 573.9 458 62.4
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 7.1e-161 571.2 458 62.4
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 7.9e-160 567.8 456 63.2
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 1.9e-158 563.1 458 62.9
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 1.3e-157 560.5 450 63.6
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 1.6e-157 560.1 457 61.7
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 3.7e-157 558.9 469 60.3
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 6.2e-157 558.1 457 62.4
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 1.4e-156 557.0 458 61.4
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 2.4e-156 556.2 453 62.3
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 5.3e-156 555.1 461 62.0
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 6.9e-156 554.7 463 61.3
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 2.0e-155 553.1 457 62.8
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 2.6e-155 552.7 453 62.5
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 4.5e-155 552.0 468 60.0
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 4.9e-154 548.5 471 59.0
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 4.9e-154 548.5 467 61.2
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 4.9e-154 548.5 468 58.8
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 8.4e-154 547.7 462 59.5
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 8.4e-154 547.7 471 59.2
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 1.4e-153 547.0 460 59.8
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 1.9e-153 546.6 459 58.8
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 3.2e-153 545.8 459 60.8
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 5.5e-153 545.0 459 62.3
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 9.3e-153 544.3 456 61.2
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 9.3e-153 544.3 471 59.2
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 1.2e-152 543.9 469 59.7
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.6e-152 543.5 465 58.5
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.1e-152 543.1 455 61.1
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 2.7e-152 542.7 460 60.2
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 6.0e-152 541.6 455 60.9
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 6.0e-152 541.6 458 60.3
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 7.9e-152 541.2 471 58.8
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.0e-151 540.8 453 60.9
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 1.0e-151 540.8 454 61.5
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 1.0e-151 540.8 458 60.7
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 1.3e-151 540.4 459 59.9
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 3.0e-151 539.3 455 60.4
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 3.9e-151 538.9 447 62.6
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 5.1e-151 538.5 460 59.1
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 5.1e-151 538.5 472 58.5
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 8.7e-151 537.7 455 60.4
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.1e-150 537.3 459 59.9
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 1.9e-150 536.6 462 58.9
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.3e-150 535.4 459 59.5
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 4.3e-150 535.4 458 59.2
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.3e-149 533.9 460 59.3
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.3e-149 533.9 457 58.9
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 3.7e-149 532.3 462 59.1
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 6.3e-149 531.6 467 59.3
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.1e-148 530.8 457 59.7
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 1.8e-148 530.0 456 59.6
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.8e-148 530.0 457 59.7
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.8e-148 530.0 457 59.5
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 1.8e-148 530.0 460 60.0
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 9.0e-148 527.7 466 59.2
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 2.0e-147 526.6 456 59.4
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 5.0e-146 521.9 453 59.2
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 6.5e-146 521.5 457 59.5
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 1.2e-144 517.3 453 57.0
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 5.1e-143 511.9 455 57.8
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 8.8e-143 511.1 446 59.4
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 9.7e-142 507.7 457 57.5
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 2.4e-140 503.1 454 56.8
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 2.4e-140 503.1 458 56.1
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 5.9e-139 498.4 454 55.5
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.9e-137 493.4 423 60.0
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 9.7e-134 481.1 459 55.8
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.3e-133 480.7 465 53.1
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.1e-132 476.1 432 54.9
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.5e-131 472.6 428 54.4
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 1.6e-128 463.8 458 52.0
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 4.7e-128 462.2 405 59.5
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 4.4e-126 455.7 450 51.6
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 8.2e-125 451.4 467 51.8
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 8.2e-125 451.4 458 53.1
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 2.4e-124 449.9 450 53.3
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 4.1e-124 449.1 461 50.1
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 5.3e-124 448.7 388 57.0
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 7.0e-124 448.4 455 51.4
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 9.1e-124 448.0 460 50.7
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 2.0e-123 446.8 452 50.2
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 2.6e-123 446.4 449 50.8
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 5.9e-123 445.3 429 52.7
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 7.7e-123 444.9 466 50.2
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.3e-122 444.1 466 50.0
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 5.0e-122 442.2 454 49.3
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 5.0e-122 442.2 449 51.7
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 6.5e-122 441.8 449 49.9
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 5.5e-121 438.7 449 50.6
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 5.5e-121 438.7 459 49.5
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 9.4e-121 438.0 449 51.0
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 9.4e-121 438.0 464 49.4
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.2e-120 437.6 457 49.0
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 3.6e-120 436.0 457 51.0
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 4.7e-120 435.6 452 49.6
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 6.1e-120 435.3 441 50.1
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 6.1e-120 435.3 452 49.3
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 8.0e-120 434.9 470 50.0
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 4.0e-119 432.6 426 52.3
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 5.2e-119 432.2 445 51.0
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 5.2e-119 432.2 463 49.9
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 8.8e-119 431.4 449 49.7
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 1.2e-118 431.0 446 50.9
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 1.2e-118 431.0 463 51.0
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 3.4e-118 429.5 445 50.8
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 4.4e-118 429.1 448 49.3
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 5.7e-118 428.7 452 48.5
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 7.5e-118 428.3 446 51.3
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 1.3e-117 427.6 452 48.2
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 1.7e-117 427.2 448 48.9
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 4.8e-117 425.6 446 51.1
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 4.8e-117 425.6 446 51.1
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 6.3e-117 425.2 446 51.1
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 8.3e-117 424.9 452 48.2
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 8.3e-117 424.9 452 48.2
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 8.3e-117 424.9 450 48.2
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 1.1e-116 424.5 451 48.1
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 2.4e-116 423.3 444 48.9
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 9.1e-116 421.4 462 49.1
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 9.1e-116 421.4 463 49.9
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 1.2e-115 421.0 315 66.3
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 1.2e-115 421.0 315 66.3
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 7.7e-115 418.3 457 47.9
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 3.8e-114 416.0 459 47.7
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 3.2e-113 412.9 465 45.4
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 7.2e-113 411.8 460 47.4
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 7.2e-113 411.8 460 47.4
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 9.4e-113 411.4 462 47.6
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 8.0e-112 408.3 460 47.2
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 8.0e-112 408.3 460 47.4
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 1.2e-110 404.4 461 46.2
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 3.7e-109 399.4 460 46.3
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 8.3e-109 398.3 461 47.9
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.4e-108 397.5 454 46.7
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 1.2e-107 394.4 450 45.8
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 4.5e-107 392.5 460 45.0
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 7.7e-107 391.7 450 45.8
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 2.9e-106 389.8 456 45.0
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 2.8e-104 383.3 424 47.2
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 3.0e-103 379.8 457 44.6
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.6e-94 350.1 438 44.1
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 7.5e-94 348.6 438 43.8
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.9e-92 344.0 438 43.4
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.0e-91 340.5 438 43.6
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 5.4e-84 315.8 453 40.6
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.6e-83 314.3 433 41.3
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 6.6e-74 282.3 352 43.8
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 6.6e-66 255.8 341 41.9
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.9e-65 254.2 209 60.3
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 2.5e-65 253.8 317 47.3
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 9.3e-60 235.3 204 63.7
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.8e-55 221.1 162 64.8
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 3.1e-55 220.3 203 54.7
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 4.0e-55 219.9 203 54.7
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 1.4e-44 184.9 163 56.4
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 2.8e-40 170.6 211 45.5
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 1.3e-32 145.2 270 37.0
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 3.7e-24 117.1 128 42.2
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 5.7e-17 93.2 279 29.0
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 7.4e-17 92.8 124 42.7
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 2.2e-13 81.3 89 48.3
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 3.2e-12 77.4 91 47.3
MBI02_g23015_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 4.4e-09 67.0 67 50.7
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 6.3e-08 63.2 102 41.2
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 5.3e-07 60.1 142 29.6


User provided reference genes

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