Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 0.0e+00 1330.1 707 100.0
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 6.8e-264 914.1 719 70.4
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 1.9e-250 869.4 721 67.4
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 7.3e-250 867.5 719 67.3
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 1.1e-237 827.0 829 58.6
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 3.1e-192 676.0 775 52.8
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 6.9e-184 648.3 715 54.3
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 2.3e-163 580.1 720 50.3
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 3.7e-161 572.8 633 52.3
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 3.7e-161 572.8 679 50.2
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 8.2e-161 571.6 703 49.5
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 2.2e-158 563.5 741 49.3
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 2.2e-158 563.5 741 49.3
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 1.2e-156 557.8 721 48.3
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 1.6e-156 557.4 726 48.5
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 4.7e-156 555.8 686 49.3
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 6.1e-156 555.4 706 49.4
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.0e-155 554.7 721 48.0
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 2.6e-154 550.1 639 51.2
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 3.3e-154 549.7 687 49.6
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 3.3e-154 549.7 642 51.4
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 3.3e-154 549.7 701 49.2
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 7.5e-154 548.5 634 51.1
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 2.4e-152 543.5 639 50.9
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 3.1e-152 543.1 684 49.4
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 3.1e-152 543.1 680 48.5
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 1.6e-151 540.8 716 47.9
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 1.0e-150 538.1 648 50.3
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 1.3e-150 537.7 650 50.5
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 2.9e-150 536.6 686 48.5
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 8.5e-150 535.0 695 49.9
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 1.4e-147 527.7 690 47.0
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 1.4e-147 527.7 730 46.7
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 6.8e-147 525.4 651 49.9
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 1.3e-145 521.2 640 49.5
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 1.3e-145 521.2 726 46.3
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 1.7e-145 520.8 695 46.9
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 2.8e-145 520.0 748 44.4
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 8.3e-145 518.5 690 46.2
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 1.1e-144 518.1 690 46.5
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 1.8e-144 517.3 685 47.4
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 7.0e-144 515.4 697 45.9
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 3.5e-143 513.1 700 47.3
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 6.6e-142 508.8 686 47.7
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 1.5e-141 507.7 676 47.9
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.5e-141 506.9 696 45.5
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 3.3e-141 506.5 706 47.0
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 1.6e-140 504.2 667 47.5
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 5.2e-139 499.2 722 45.4
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 6.8e-139 498.8 660 47.4
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 1.2e-138 498.0 624 49.0
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 2.0e-138 497.3 678 46.8
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 4.4e-138 496.1 641 47.9
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 5.7e-138 495.7 650 48.0
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 1.3e-137 494.6 687 46.1
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 1.7e-137 494.2 634 48.3
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 2.8e-137 493.4 745 44.0
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 3.7e-137 493.0 697 45.8
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 3.1e-136 490.0 709 44.7
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 7.0e-136 488.8 740 43.0
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 3.3e-133 479.9 633 46.6
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 3.3e-133 479.9 688 44.8
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 2.1e-132 477.2 659 46.6
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 2.8e-132 476.9 722 44.5
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 3.6e-132 476.5 753 43.7
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 6.1e-132 475.7 709 44.6
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 3.1e-131 473.4 683 45.7
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 4.0e-131 473.0 729 43.1
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 5.2e-131 472.6 744 43.5
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 1.2e-130 471.5 645 47.0
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 2.6e-130 470.3 678 44.0
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 3.2e-128 463.4 678 45.3
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 3.2e-128 463.4 639 47.9
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 6.2e-124 449.1 655 44.9
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 4.9e-121 439.5 717 42.5
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 2.3e-118 430.6 713 40.8
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 3.3e-117 426.8 717 41.1
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 1.6e-116 424.5 681 42.1
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 3.6e-116 423.3 664 42.8
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 3.6e-116 423.3 638 43.6
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 6.2e-116 422.5 688 41.6
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 1.4e-115 421.4 638 43.6
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 6.8e-115 419.1 513 50.9
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 9.9e-114 415.2 694 42.9
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 1.2e-111 408.3 589 45.3
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 4.6e-111 406.4 558 45.5
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 4.3e-109 399.8 685 40.1
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 3.1e-107 393.7 630 40.8
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 2.9e-105 387.1 714 39.6
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 5.1e-102 376.3 633 41.2
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 6.6e-102 375.9 641 40.1
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 4.7e-100 369.8 683 38.9
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 8.1e-100 369.0 605 41.5
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 9.9e-98 362.1 588 43.9
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 4.9e-97 359.8 642 39.1
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 1.9e-96 357.8 642 39.7
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 5.4e-96 356.3 618 39.0
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 6.0e-95 352.8 709 38.9
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 5.1e-94 349.7 633 38.5
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 1.9e-93 347.8 573 40.3
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 2.5e-93 347.4 566 43.1
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 1.5e-90 338.2 753 37.2
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 5.4e-88 329.7 606 38.4
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 5.4e-88 329.7 606 38.4
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 7.9e-87 325.9 646 36.7
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 1.6e-84 318.2 510 42.9
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 5.3e-83 313.2 300 59.3
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 9.0e-83 312.4 518 39.4
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 1.5e-82 311.6 636 37.4
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 2.9e-81 307.4 467 43.3
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 6.0e-79 299.7 515 41.6
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 7.9e-79 299.3 443 46.5
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 2.0e-66 258.1 189 66.7
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 1.9e-64 251.5 521 37.8
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 1.9e-64 251.5 548 36.3
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 1.6e-63 248.4 616 35.7
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 1.4e-62 245.4 264 54.5
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 1.4e-56 225.3 217 53.5
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 1.3e-49 202.2 217 50.2
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 2.5e-48 198.0 254 43.7
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 4.1e-43 180.6 201 46.8
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 1.5e-37 162.2 394 34.3
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 1.3e-36 159.1 179 49.7
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 6.3e-36 156.8 439 31.9
CDE09G1248 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 7.0e-35 153.3 309 38.5
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 2.7e-34 151.4 158 53.8
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 1.7e-33 148.7 180 47.8
RcHm_v2.0_Chr1g0369361 Rosa chinensis HOM05D004806 ORTHO05D005397 5.0e-33 147.1 198 47.0
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 4.7e-31 140.6 112 60.7
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 8.8e-30 136.3 121 57.0
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 4.1e-27 127.5 184 41.3
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 9.5e-24 116.3 133 46.6
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 1.6e-23 115.5 106 50.9
Oeu022381.1 Olea europaea HOM05D004806 ORTHO05D005397 1.8e-22 112.1 152 44.7
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 3.0e-22 111.3 112 48.2
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 2.7e-18 98.2 78 62.8
Ah.05g175410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 4.5e-18 97.4 55 85.5
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 3.9e-17 94.4 72 61.1
ATR0618G087 Amborella trichopoda HOM05D004806 ORTHO05D005397 7.3e-16 90.1 196 36.7
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 3.6e-15 87.8 116 41.4
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 3.1e-14 84.7 138 38.4
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 3.7e-12 77.8 169 31.4
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 6.0e-10 70.5 98 43.9
Sc11g0006970 Simmondsia chinensis HOM05D004806 ORTHO05D005397 1.3e-09 69.3 109 43.1
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 5.0e-09 67.4 138 37.0
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 5.6e-08 63.9 66 53.0
Oeu059752.1 Olea europaea HOM05D004806 ORTHO05D005397 4.7e-07 60.8 129 34.9
MBI19_g13733_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D011443 4.0e-06 57.8 40 70.0
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 8.9e-06 56.6 61 50.8


User provided reference genes

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