Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g103060 Amaranthus hybridus HOM05D006228 ORTHO05D007847 1.4e-234 815.8 408 100.0
AUR62022833 Chenopodium quinoa HOM05D006228 ORTHO05D007847 6.8e-168 594.3 424 70.5
EL10Ac2g04780 Beta vulgaris HOM05D006228 ORTHO05D007847 6.0e-164 581.3 417 70.0
AUR62012200 Chenopodium quinoa HOM05D006228 ORTHO05D007847 2.0e-151 539.7 407 66.8
Hund13827 Selenicereus undatus HOM05D006228 ORTHO05D007847 1.9e-146 523.1 481 58.0
Dinv34431 Davidia involucrata HOM05D006228 ORTHO05D007847 3.3e-138 495.7 444 58.3
Actinidia13913 Actinidia chinensis HOM05D006228 ORTHO05D007847 2.6e-135 486.1 436 58.3
CSS0000174 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 1.7e-134 483.4 434 58.1
TAR633G1830 Trochodendron aralioides HOM05D006228 ORTHO05D007847 1.7e-134 483.4 444 56.5
CSS0026214 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 2.2e-134 483.0 434 58.3
Peaxi162Scf00401g00030 Petunia axillaris HOM05D006228 ORTHO05D007847 8.4e-134 481.1 404 60.6
Potri.008G063500 Populus trichocarpa HOM05D006228 ORTHO05D007847 1.1e-133 480.7 447 55.9
Rhsim09G0171700 Rhododendron simsii HOM05D006228 ORTHO05D007847 7.1e-133 478.0 459 54.9
Nitab4.5_0000278g0180 Nicotiana tabacum HOM05D006228 ORTHO05D007847 2.3e-131 473.0 416 59.4
Sabra08G0046800 Salix brachista HOM05D006228 ORTHO05D007847 3.0e-131 472.6 428 57.5
Manes.10G018500 Manihot esculenta HOM05D006228 ORTHO05D007847 5.7e-130 468.4 435 56.1
Haze_17175 Corylus avellana HOM05D006228 ORTHO05D007847 9.7e-130 467.6 439 55.6
CAN.G1280.21 Capsicum annuum HOM05D006228 ORTHO05D007847 2.8e-129 466.1 423 57.4
PGSC0003DMG400007303 Solanum tuberosum HOM05D006228 ORTHO05D007847 3.7e-129 465.7 422 57.6
Nn2g13585 Nelumbo nucifera HOM05D006228 ORTHO05D007847 6.3e-129 464.9 428 56.1
MBI14_g08147_MAGBIO Magnolia biondii HOM05D006228 ORTHO05D007847 3.1e-128 462.6 437 55.8
Prupe.2G245100 Prunus persica HOM05D006228 ORTHO05D007847 3.1e-128 462.6 439 55.4
Migut.F00709 Erythranthe guttata HOM05D006228 ORTHO05D007847 9.0e-128 461.1 431 55.2
Sopen06g004350 Solanum pennellii HOM05D006228 ORTHO05D007847 9.0e-128 461.1 422 57.1
TWI09G0225 Tripterygium wilfordii HOM05D006228 ORTHO05D007847 9.0e-128 461.1 435 54.7
Solyc06g009690.3 Solanum lycopersicum HOM05D006228 ORTHO05D007847 1.2e-127 460.7 422 56.6
GSVIVG01016380001 Vitis vinifera HOM05D006228 ORTHO05D007847 1.2e-127 460.7 447 53.5
Glyma.18G031000 Glycine max HOM05D006228 ORTHO05D007847 2.0e-127 459.9 414 56.0
Nitab4.5_0012179g0020 Nicotiana tabacum HOM05D006228 ORTHO05D007847 2.0e-127 459.9 454 55.1
PSO384G3635 Papaver somniferum HOM05D006228 ORTHO05D007847 4.5e-127 458.8 424 53.3
CiPaw.01G295100 Carya illinoinensis HOM05D006228 ORTHO05D007847 7.7e-127 458.0 442 55.2
MD07G1212900 Malus domestica HOM05D006228 ORTHO05D007847 2.9e-126 456.1 435 54.5
Aqoxy1G00736 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 5.0e-126 455.3 412 56.8
RcHm_v2.0_Chr1g0369221 Rosa chinensis HOM05D006228 ORTHO05D007847 6.5e-126 454.9 422 55.9
Thecc.10G027500 Theobroma cacao HOM05D006228 ORTHO05D007847 1.6e-124 450.3 421 54.9
Aqoxy3G00589 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 2.7e-124 449.5 412 55.8
COL.COLO4_25614 Corchorus olitorius HOM05D006228 ORTHO05D007847 1.0e-123 447.6 421 54.9
THA.LOC104810050 Tarenaya hassleriana HOM05D006228 ORTHO05D007847 3.9e-123 445.7 422 55.0
TPR.G29810 Trifolium pratense HOM05D006228 ORTHO05D007847 5.1e-123 445.3 420 52.9
Cfa005508 Carpinus fangiana HOM05D006228 ORTHO05D007847 8.8e-123 444.5 442 53.4
Ca_17139_v3 Cicer arietinum L. HOM05D006228 ORTHO05D007847 1.5e-122 443.7 430 52.6
Gohir.D06G170400 Gossypium hirsutum HOM05D006228 ORTHO05D007847 2.5e-122 443.0 419 53.7
FAN03G1418 Fragaria x ananassa HOM05D006228 ORTHO05D007847 3.3e-122 442.6 415 55.9
Medtr3g070010 Medicago truncatula HOM05D006228 ORTHO05D007847 7.4e-122 441.4 431 52.0
Gorai.010G199300 Gossypium raimondii HOM05D006228 ORTHO05D007847 2.8e-121 439.5 419 53.5
Oeu006660.1 Olea europaea HOM05D006228 ORTHO05D007847 2.8e-121 439.5 430 54.0
Psat5g127520 Pisum sativum HOM05D006228 ORTHO05D007847 4.8e-121 438.7 430 50.9
MELO3C025144.2 Cucumis melo HOM05D006228 ORTHO05D007847 6.3e-121 438.3 425 52.7
VMungo1383G2528 Vigna mungo HOM05D006228 ORTHO05D007847 6.3e-121 438.3 417 51.6
ClCG11G010510 Citrullus lanatus HOM05D006228 ORTHO05D007847 8.2e-121 438.0 433 51.3
FAN06G4757 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.4e-120 437.2 424 54.5
Lj1A949T58 Lonicera japonica HOM05D006228 ORTHO05D007847 1.4e-120 437.2 442 53.8
Gohir.A06G164900 Gossypium hirsutum HOM05D006228 ORTHO05D007847 1.8e-120 436.8 419 53.0
FAN01G0169 Fragaria x ananassa HOM05D006228 ORTHO05D007847 2.4e-120 436.4 425 54.4
Cc02_g06990 Coffea canephora HOM05D006228 ORTHO05D007847 1.2e-119 434.1 425 54.4
CsaV3_5G008840 Cucumis sativus L. HOM05D006228 ORTHO05D007847 1.2e-119 434.1 432 51.6
FvH4_7g23870 Fragaria vesca HOM05D006228 ORTHO05D007847 2.0e-119 433.3 422 54.0
SGA_v2.0_scaffold2G01060 Striga asiatica HOM05D006228 ORTHO05D007847 1.0e-118 431.0 430 52.1
Lalb_Chr18g0052781 Lupinus albus HOM05D006228 ORTHO05D007847 1.7e-118 430.3 434 51.8
ECA232G3403 Erigeron canadensis HOM05D006228 ORTHO05D007847 5.0e-118 428.7 415 54.5
arahy.Tifrunner.gnm1.ann1.H1F5T1 Arachis hypogaea HOM05D006228 ORTHO05D007847 1.9e-117 426.8 453 50.1
Lj6g0016911 Lotus japonicus HOM05D006228 ORTHO05D007847 3.2e-117 426.0 434 51.6
Lsat_1_v5_gn_9_63220 Lactuca sativa HOM05D006228 ORTHO05D007847 9.4e-117 424.5 376 58.8
Sed0002982 Sechium edule HOM05D006228 ORTHO05D007847 3.6e-116 422.5 430 51.9
BolC3t15036H Brassica oleracea HOM05D006228 ORTHO05D007847 5.1e-115 418.7 420 50.0
C03p26500 Brassica napus HOM05D006228 ORTHO05D007847 1.5e-114 417.2 419 49.6
Thhalv10016686m.g Eutrema salsugineum HOM05D006228 ORTHO05D007847 1.5e-114 417.2 426 50.7
Sc11g0007370 Simmondsia chinensis HOM05D006228 ORTHO05D007847 4.4e-114 415.6 359 58.8
Hma1.2p1_0026F.1_g016930 Hydrangea macrophylla HOM05D006228 ORTHO05D007847 9.7e-114 414.5 306 65.7
SalBow5G2373 Salvia bowleyana HOM05D006228 ORTHO05D007847 1.7e-113 413.7 411 52.6
Aa31LG5G19710 Aethionema arabicum HOM05D006228 ORTHO05D007847 2.2e-113 413.3 432 48.6
BraA03t11466Z Brassica rapa HOM05D006228 ORTHO05D007847 2.2e-113 413.3 422 49.5
Sp4g22220 Schrenkiella parvula HOM05D006228 ORTHO05D007847 3.7e-113 412.5 434 48.6
A03p22360 Brassica napus HOM05D006228 ORTHO05D007847 1.1e-112 411.0 422 48.8
AL4G37490 Arabidopsis lyrata HOM05D006228 ORTHO05D007847 1.4e-112 410.6 414 50.0
AT2G39910 Arabidopsis thaliana HOM05D006228 ORTHO05D007847 1.4e-112 410.6 422 49.8
Phvul.001G239600 Phaseolus vulgaris HOM05D006228 ORTHO05D007847 2.0e-111 406.8 414 50.5
vmacro10067 Vaccinium macrocarpon HOM05D006228 ORTHO05D007847 3.5e-111 406.0 473 49.3
HanXRQChr09g0246891 Helianthus annuus HOM05D006228 ORTHO05D007847 4.5e-111 405.6 416 52.6
BcaC01g05454 Brassica carinata HOM05D006228 ORTHO05D007847 1.3e-110 404.1 419 49.2
BcaB01g03579 Brassica carinata HOM05D006228 ORTHO05D007847 8.5e-110 401.4 428 48.4
Duzib106G2031 Durio zibethinus HOM05D006228 ORTHO05D007847 1.9e-109 400.2 421 50.6
CARHR134830 Cardamine hirsuta HOM05D006228 ORTHO05D007847 4.2e-109 399.1 425 48.2
Carub.0004s2204 Capsella rubella HOM05D006228 ORTHO05D007847 9.4e-109 397.9 429 48.3
ATR0580G418 Amborella trichopoda HOM05D006228 ORTHO05D007847 1.0e-107 394.4 427 47.8
SHI03521 Sapria himalayana HOM05D006228 ORTHO05D007847 2.0e-106 390.2 418 50.2
Ciclev10031701m.g Citrus clementina HOM05D006228 ORTHO05D007847 6.3e-105 385.2 409 52.6
PGR044G0451 Punica granatum HOM05D006228 ORTHO05D007847 3.5e-103 379.4 442 48.9
DCAR_011778 Daucus carota HOM05D006228 ORTHO05D007847 1.5e-101 374.0 424 49.1
FAN10G3493 Fragaria x ananassa HOM05D006228 ORTHO05D007847 2.1e-100 370.2 424 49.1
PSO585G0034 Papaver somniferum HOM05D006228 ORTHO05D007847 3.0e-99 366.3 290 59.3
Atru.chr12.264 Acer truncatum HOM05D006228 ORTHO05D007847 8.8e-99 364.8 360 51.9
Zm00001eb226270 Zea mays HOM05D006228 ORTHO05D007847 7.2e-93 345.1 414 44.9
arahy.Tifrunner.gnm1.ann1.PGVU2S Arachis hypogaea HOM05D006228 ORTHO05D007847 2.3e-91 340.1 356 50.8
Eucgr.J00246 Eucalyptus grandis HOM05D006228 ORTHO05D007847 5.2e-91 339.0 431 46.4
SEGI_03712 Sequoiadendron giganteum HOM05D006228 ORTHO05D007847 2.0e-90 337.0 420 44.0
Os06g0694100 Oryza sativa ssp. japonica HOM05D006228 ORTHO05D007847 1.2e-87 327.8 410 42.9
unitig_747.g21715 Utricularia gibba HOM05D006228 ORTHO05D007847 2.3e-86 323.6 431 42.5
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 5.7e-82 308.9 334 49.7
FAN06G0021 Fragaria x ananassa HOM05D006228 ORTHO05D007847 6.1e-76 288.9 306 52.3
Cpa.g.sc19.228 Carica papaya HOM05D006228 ORTHO05D007847 3.1e-75 286.6 419 39.9
QL08p062537 Quercus lobata HOM05D006228 ORTHO05D007847 3.0e-54 216.9 149 68.5
AagrBONN_evm.TU.Sc2ySwM_344.5121 Anthoceros agrestis HOM05D006228 ORTHO05D007847 5.1e-54 216.1 374 36.1
BcaC02g07378 Brassica carinata HOM05D006228 ORTHO05D007847 3.6e-52 209.9 229 47.2
HPP92_018568 Vanilla planifolia HOM05D006228 ORTHO05D007847 7.6e-50 202.2 248 43.1
Actinidia00930 Actinidia chinensis HOM05D006228 ORTHO05D007847 2.9e-49 200.3 155 64.5
Mapoly0014s0032 Marchantia polymorpha HOM05D006228 ORTHO05D007847 1.7e-46 191.0 360 32.5
Sed0008304 Sechium edule HOM05D006228 ORTHO05D007847 2.3e-46 190.7 385 36.6
MSTRG.8975 Avicennia marina HOM05D006228 ORTHO05D007847 5.1e-46 189.5 220 46.8
RcHm_v2.0_Chr2g0110551 Rosa chinensis HOM05D006228 ORTHO05D007847 5.1e-46 189.5 149 58.4
Pp3c11_8050 Physcomitrium patens HOM05D006228 ORTHO05D007847 8.7e-46 188.7 273 38.5
BcaB06g29116 Brassica carinata HOM05D006228 ORTHO05D007847 1.3e-44 184.9 230 43.5
SMO273G0042 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 1.1e-43 181.8 310 36.8
HPP92_018569 Vanilla planifolia HOM05D006228 ORTHO05D007847 1.4e-40 171.4 144 54.9
SMO147G0063 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 1.6e-39 167.9 288 36.5
RcHm_v2.0_Chr1g0339731 Rosa chinensis HOM05D006228 ORTHO05D007847 2.5e-37 160.6 149 53.7
BolC4t28269H Brassica oleracea HOM05D006228 ORTHO05D007847 5.3e-27 126.3 145 44.1
Actinidia25353 Actinidia chinensis HOM05D006228 ORTHO05D007847 2.2e-25 120.9 143 50.3
arahy.Tifrunner.gnm1.ann1.DSNI2G Arachis hypogaea HOM05D002669 ORTHO05D003001 2.2e-17 94.4 61 68.9
arahy.Tifrunner.gnm1.ann1.YTZ5F3 Arachis hypogaea HOM05D006228 ORTHO05D007847 2.5e-16 90.9 61 67.2
MCO16G020 Micromonas commoda HOM05D006228 ORTHO05D007847 7.9e-15 85.9 253 24.9
C04p67680 Brassica napus HOM05D006228 ORTHO05D007847 2.4e-11 74.3 106 38.7
Nitab4.5_0001379g0140 Nicotiana tabacum HOM05D006228 ORTHO05D007847 3.6e-07 60.5 31 83.9


User provided reference genes

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