Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 6.4e-32 140.2 74 100.0
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 4.0e-18 94.4 62 82.3
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 4.0e-18 94.4 62 82.3
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 4.5e-17 90.9 62 79.0
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 4.5e-17 90.9 62 77.4
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 7.6e-17 90.1 62 77.4
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 9.9e-17 89.7 57 77.2
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 9.9e-17 89.7 57 78.9
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 9.9e-17 89.7 57 78.9
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 9.9e-17 89.7 55 78.2
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 1.3e-16 89.4 62 77.4
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 1.7e-16 89.0 62 75.8
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 2.2e-16 88.6 62 77.4
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 2.9e-16 88.2 62 75.8
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 2.9e-16 88.2 62 77.4
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 2.9e-16 88.2 57 77.2
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 3.8e-16 87.8 57 75.4
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 3.8e-16 87.8 62 75.8
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 3.8e-16 87.8 62 75.8
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 3.8e-16 87.8 62 75.8
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 3.8e-16 87.8 62 74.2
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 3.8e-16 87.8 62 75.8
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 3.8e-16 87.8 57 77.2
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 3.8e-16 87.8 57 77.2
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 3.8e-16 87.8 57 77.2
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 4.9e-16 87.4 57 75.4
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 4.9e-16 87.4 57 75.4
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 4.9e-16 87.4 57 75.4
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 4.9e-16 87.4 62 74.2
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 6.4e-16 87.0 57 75.4
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 6.4e-16 87.0 57 77.2
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 6.4e-16 87.0 57 77.2
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 8.4e-16 86.7 62 75.8
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 8.4e-16 86.7 51 84.3
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 8.4e-16 86.7 57 75.4
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 8.4e-16 86.7 62 74.2
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 1.1e-15 86.3 62 72.6
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 1.1e-15 86.3 62 75.8
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 1.1e-15 86.3 62 74.2
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 1.1e-15 86.3 62 74.2
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 1.1e-15 86.3 57 75.4
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 1.1e-15 86.3 57 75.4
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 1.1e-15 86.3 57 75.4
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.1e-15 86.3 57 75.4
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 1.4e-15 85.9 62 74.2
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 1.4e-15 85.9 62 74.2
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 1.4e-15 85.9 57 75.4
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 1.4e-15 85.9 57 75.4
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 1.4e-15 85.9 62 72.6
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 1.4e-15 85.9 57 77.2
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 1.4e-15 85.9 62 72.6
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 1.4e-15 85.9 57 73.7
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 1.4e-15 85.9 62 72.6
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 1.4e-15 85.9 62 72.6
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 1.4e-15 85.9 62 72.6
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.4e-15 85.9 62 74.2
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.4e-15 85.9 62 72.6
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 1.4e-15 85.9 62 72.6
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 1.9e-15 85.5 62 72.6
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 1.9e-15 85.5 62 72.6
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 1.9e-15 85.5 57 77.2
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 1.9e-15 85.5 56 73.2
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 1.9e-15 85.5 62 75.8
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 1.9e-15 85.5 62 74.2
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.9e-15 85.5 62 72.6
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 2.4e-15 85.1 57 73.7
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 2.4e-15 85.1 51 82.4
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.4e-15 85.1 49 87.8
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 2.4e-15 85.1 51 84.3
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 2.4e-15 85.1 57 73.7
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 3.2e-15 84.7 62 74.2
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 3.2e-15 84.7 51 82.4
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 3.2e-15 84.7 62 69.4
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 3.2e-15 84.7 62 72.6
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.2e-15 84.7 57 71.9
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 4.2e-15 84.3 62 74.2
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 5.4e-15 84.0 51 80.4
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 5.4e-15 84.0 51 80.4
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 5.4e-15 84.0 57 73.7
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 5.4e-15 84.0 62 71.0
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 5.4e-15 84.0 62 71.0
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 5.4e-15 84.0 62 71.0
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 5.4e-15 84.0 51 80.4
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 5.4e-15 84.0 51 82.4
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 5.4e-15 84.0 62 72.6
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 5.4e-15 84.0 62 71.0
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 7.1e-15 83.6 62 71.0
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 7.1e-15 83.6 51 80.4
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 9.3e-15 83.2 62 72.6
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 9.3e-15 83.2 58 70.7
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 1.2e-14 82.8 59 69.5
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.2e-14 82.8 59 71.2
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.2e-14 82.8 59 69.5
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 1.2e-14 82.8 51 78.4
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 1.2e-14 82.8 51 82.4
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 1.2e-14 82.8 59 69.5
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 1.2e-14 82.8 50 82.0
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.6e-14 82.4 51 78.4
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.6e-14 82.4 59 69.5
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 1.6e-14 82.4 50 80.0
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 2.1e-14 82.0 62 67.7
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 2.1e-14 82.0 62 72.6
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 2.7e-14 81.6 62 69.4
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 2.7e-14 81.6 61 67.2
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 3.5e-14 81.3 51 80.4
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 4.6e-14 80.9 56 66.1
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 4.6e-14 80.9 50 80.0
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 4.6e-14 80.9 50 80.0
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 4.6e-14 80.9 61 65.6
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 1.8e-13 79.0 51 74.5
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 6.7e-13 77.0 55 70.9
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 1.1e-12 76.3 51 72.5
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 2.5e-12 75.1 59 64.4
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 3.3e-12 74.7 62 62.9
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 7.4e-12 73.6 57 61.4
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.3e-11 72.8 47 78.7
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 6.2e-11 70.5 56 58.9
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 1.8e-10 68.9 66 54.5
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 3.1e-10 68.2 62 59.7
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 1.5e-09 65.9 61 57.4
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 2.6e-09 65.1 66 51.5
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 2.9e-08 61.6 41 73.2
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 4.9e-08 60.8 65 49.2
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 1.1e-07 59.7 40 72.5
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 1.1e-07 59.7 40 72.5
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 1.1e-07 59.7 40 72.5
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 2.5e-07 58.5 65 49.2


User provided reference genes

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