Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g102800 Amaranthus hybridus HOM05D005780 ORTHO05D007289 1.2e-132 476.5 231 100.0
Hund13812 Selenicereus undatus HOM05D005780 ORTHO05D007289 3.2e-90 335.5 238 71.4
EL10Ac2g04667 Beta vulgaris HOM05D005780 ORTHO05D007289 2.2e-86 322.8 234 69.2
Sc14g0004720 Simmondsia chinensis HOM05D005780 ORTHO05D007289 4.5e-84 315.1 235 67.7
Haze_17154 Corylus avellana HOM05D005780 ORTHO05D007289 2.3e-80 302.8 229 65.1
GSVIVG01016433001 Vitis vinifera HOM05D005780 ORTHO05D007289 2.3e-80 302.8 235 64.7
Atru.chr12.271 Acer truncatum HOM05D005780 ORTHO05D007289 7.5e-79 297.7 237 61.6
Dinv16281 Davidia involucrata HOM05D005780 ORTHO05D007289 7.5e-79 297.7 228 66.7
Hma1.2p1_0039F.1_g024930 Hydrangea macrophylla HOM05D005780 ORTHO05D007289 2.8e-78 295.8 233 63.9
TAR623G0797 Trochodendron aralioides HOM05D005780 ORTHO05D007289 6.3e-78 294.7 235 63.4
CsaV3_6G001510 Cucumis sativus L. HOM05D005780 ORTHO05D007289 1.8e-77 293.1 236 60.6
Gorai.011G274500 Gossypium raimondii HOM05D005780 ORTHO05D007289 1.2e-76 290.4 226 61.5
PSO339G4705 Papaver somniferum HOM05D005780 ORTHO05D007289 1.6e-76 290.0 234 59.0
PSO384G4288 Papaver somniferum HOM05D005780 ORTHO05D007289 1.6e-76 290.0 233 59.7
Cpa.g.sc19.252 Carica papaya HOM05D005780 ORTHO05D007289 3.5e-76 288.9 235 61.3
Nn2g13534 Nelumbo nucifera HOM05D005780 ORTHO05D007289 5.9e-76 288.1 236 60.2
THA.LOC104823134 Tarenaya hassleriana HOM05D005780 ORTHO05D007289 5.9e-76 288.1 233 60.9
Gohir.A10G226300 Gossypium hirsutum HOM05D005780 ORTHO05D007289 7.8e-76 287.7 234 59.8
Sp6g36970 Schrenkiella parvula HOM05D005780 ORTHO05D007289 1.3e-75 287.0 234 58.1
CANSAT56G3446 Cannabis sativa HOM05D005780 ORTHO05D007289 2.9e-75 285.8 237 60.8
Sed0012096 Sechium edule HOM05D005780 ORTHO05D007289 2.9e-75 285.8 232 60.8
MSTRG.251 Avicennia marina HOM05D005780 ORTHO05D007289 3.8e-75 285.4 235 61.3
Cfa001395 Carpinus fangiana HOM05D005780 ORTHO05D007289 3.8e-75 285.4 224 63.4
Manes.07G122900 Manihot esculenta HOM05D005780 ORTHO05D007289 5.0e-75 285.0 237 60.8
Actinidia02380 Actinidia chinensis HOM05D005780 ORTHO05D007289 6.6e-75 284.6 232 62.1
Eucgr.J00968 Eucalyptus grandis HOM05D005780 ORTHO05D007289 6.6e-75 284.6 230 62.2
Aqoxy1G00787 Aquilegia oxysepala HOM05D005780 ORTHO05D007289 8.6e-75 284.3 224 62.5
QL08p062087 Quercus lobata HOM05D005780 ORTHO05D007289 8.6e-75 284.3 234 59.0
Ciclev10032579m.g Citrus clementina HOM05D005780 ORTHO05D007289 1.1e-74 283.9 205 65.9
Carub.0006s0481 Capsella rubella HOM05D005780 ORTHO05D007289 1.9e-74 283.1 236 58.9
Potri.008G062100 Populus trichocarpa HOM05D005780 ORTHO05D007289 1.9e-74 283.1 232 59.1
Sabra08G0045700 Salix brachista HOM05D005780 ORTHO05D007289 1.9e-74 283.1 232 59.1
AL6G15850 Arabidopsis lyrata HOM05D005780 ORTHO05D007289 4.3e-74 282.0 239 58.6
Gohir.D10G238600 Gossypium hirsutum HOM05D005780 ORTHO05D007289 7.3e-74 281.2 191 68.6
MD01G1142100 Malus domestica HOM05D005780 ORTHO05D007289 2.1e-73 279.6 223 61.0
PGR044G2210 Punica granatum HOM05D005780 ORTHO05D007289 2.1e-73 279.6 244 55.7
Thhalv10014411m.g Eutrema salsugineum HOM05D005780 ORTHO05D007289 4.7e-73 278.5 239 58.6
Gohir.A13G017500 Gossypium hirsutum HOM05D005780 ORTHO05D007289 4.7e-73 278.5 236 57.6
Oeu018986.1 Olea europaea HOM05D005780 ORTHO05D007289 4.7e-73 278.5 238 60.9
Lj6g0000720 Lotus japonicus HOM05D005780 ORTHO05D007289 1.0e-72 277.3 233 58.4
Nitab4.5_0002822g0060 Nicotiana tabacum HOM05D005780 ORTHO05D007289 1.4e-72 276.9 235 61.3
Peaxi162Scf00140g01357 Petunia axillaris HOM05D005780 ORTHO05D007289 1.4e-72 276.9 235 59.6
Prupe.2G243100 Prunus persica HOM05D005780 ORTHO05D007289 1.4e-72 276.9 233 57.9
Gorai.013G020600 Gossypium raimondii HOM05D005780 ORTHO05D007289 2.3e-72 276.2 234 57.7
Hma1.2p1_0039F.1_g024940 Hydrangea macrophylla HOM05D005780 ORTHO05D007289 2.3e-72 276.2 180 72.2
Glyma.11G225300 Glycine max HOM05D005780 ORTHO05D007289 3.0e-72 275.8 233 59.2
Gohir.D13G018600 Gossypium hirsutum HOM05D005780 ORTHO05D007289 5.2e-72 275.0 232 58.2
MBI14_g02858_MAGBIO Magnolia biondii HOM05D005780 ORTHO05D007289 6.8e-72 274.6 229 62.4
Thecc.10G030600 Theobroma cacao HOM05D005780 ORTHO05D007289 6.8e-72 274.6 200 67.0
CAN.G115.6 Capsicum annuum HOM05D005780 ORTHO05D007289 1.2e-71 273.9 236 58.9
BraA10t45082Z Brassica rapa HOM05D005780 ORTHO05D007289 1.5e-71 273.5 235 57.4
TPR.G33709 Trifolium pratense HOM05D005780 ORTHO05D007289 2.6e-71 272.7 233 59.2
arahy.Tifrunner.gnm1.ann1.BF464R Arachis hypogaea HOM05D005780 ORTHO05D007289 3.4e-71 272.3 235 59.1
Glyma.18G032000 Glycine max HOM05D005780 ORTHO05D007289 5.8e-71 271.6 233 58.8
Gohir.A10G226266 Gossypium hirsutum HOM05D005780 ORTHO05D007289 5.8e-71 271.6 181 69.6
MD07G1207800 Malus domestica HOM05D005780 ORTHO05D007289 5.8e-71 271.6 223 62.8
Lsat_1_v5_gn_2_117001 Lactuca sativa HOM05D005780 ORTHO05D007289 7.5e-71 271.2 235 57.9
Lalb_Chr15g0084461 Lupinus albus HOM05D005780 ORTHO05D007289 7.5e-71 271.2 233 58.8
Psat5g125560 Pisum sativum HOM05D005780 ORTHO05D007289 1.3e-70 270.4 233 58.8
RcHm_v2.0_Chr1g0368881 Rosa chinensis HOM05D005780 ORTHO05D007289 1.3e-70 270.4 207 63.3
COL.COLO4_25579 Corchorus olitorius HOM05D005780 ORTHO05D007289 1.7e-70 270.0 262 53.8
Rhsim09G0170100 Rhododendron simsii HOM05D005780 ORTHO05D007289 1.7e-70 270.0 254 55.9
Aa31LG11G6960 Aethionema arabicum HOM05D005780 ORTHO05D007289 2.2e-70 269.6 252 55.6
C09p70870 Brassica napus HOM05D005780 ORTHO05D007289 2.2e-70 269.6 236 57.2
BolC9t59846H Brassica oleracea HOM05D005780 ORTHO05D007289 2.2e-70 269.6 236 57.2
MSTRG.8290 Avicennia marina HOM05D005780 ORTHO05D007289 2.9e-70 269.2 233 59.7
BcaC06g32303 Brassica carinata HOM05D005780 ORTHO05D007289 2.9e-70 269.2 237 57.0
Solyc03g079850.4 Solanum lycopersicum HOM05D005780 ORTHO05D007289 3.7e-70 268.9 232 59.5
Lj8A74T69 Lonicera japonica HOM05D005780 ORTHO05D007289 4.9e-70 268.5 179 71.5
Sopen03g027310 Solanum pennellii HOM05D005780 ORTHO05D007289 6.4e-70 268.1 232 59.5
Ca_17131_v3 Cicer arietinum L. HOM05D005780 ORTHO05D007289 1.4e-69 266.9 233 58.8
Cc02_g07200 Coffea canephora HOM05D005780 ORTHO05D007289 1.4e-69 266.9 235 58.7
ECA238G2932 Erigeron canadensis HOM05D005780 ORTHO05D007289 1.9e-69 266.5 227 57.7
FvH4_7g23620 Fragaria vesca HOM05D005780 ORTHO05D007289 1.9e-69 266.5 230 59.6
HanXRQChr07g0202011 Helianthus annuus HOM05D005780 ORTHO05D007289 2.4e-69 266.2 234 56.8
unitig_22.g6680 Utricularia gibba HOM05D005780 ORTHO05D007289 3.2e-69 265.8 235 58.7
FAN03G3464 Fragaria x ananassa HOM05D005780 ORTHO05D007289 5.4e-69 265.0 230 58.7
SalBow6G1112 Salvia bowleyana HOM05D005780 ORTHO05D007289 1.2e-68 263.8 247 57.9
SalBow6G4646 Salvia bowleyana HOM05D005780 ORTHO05D007289 1.2e-68 263.8 247 57.9
DCAR_011758 Daucus carota HOM05D005780 ORTHO05D007289 3.5e-68 262.3 196 63.8
VMungo1383G0024 Vigna mungo HOM05D005780 ORTHO05D007289 1.7e-67 260.0 233 58.4
Phvul.001G238600 Phaseolus vulgaris HOM05D005780 ORTHO05D007289 8.6e-67 257.7 184 67.9
Migut.F01304 Erythranthe guttata HOM05D005780 ORTHO05D007289 1.6e-65 253.4 237 59.9
Medtr3g069620 Medicago truncatula HOM05D005780 ORTHO05D007289 1.6e-65 253.4 233 57.1
HanXRQChr09g0246921 Helianthus annuus HOM05D005780 ORTHO05D007289 2.1e-65 253.1 233 54.9
Lsat_1_v5_gn_9_63040 Lactuca sativa HOM05D005780 ORTHO05D007289 2.8e-65 252.7 234 54.7
arahy.Tifrunner.gnm1.ann1.Y0QE0E Arachis hypogaea HOM05D005780 ORTHO05D007289 6.2e-65 251.5 278 50.0
Dinv34450 Davidia involucrata HOM05D005780 ORTHO05D007289 1.8e-64 250.0 210 61.0
ECA232G1234 Erigeron canadensis HOM05D005780 ORTHO05D007289 5.2e-64 248.4 233 53.6
vmacro10198 Vaccinium macrocarpon HOM05D005780 ORTHO05D007289 8.9e-64 247.7 289 47.8
Nitab4.5_0000399g0020 Nicotiana tabacum HOM05D005780 ORTHO05D007289 7.5e-63 244.6 224 58.5
Duzib128G1582 Durio zibethinus HOM05D005780 ORTHO05D007289 3.7e-62 242.3 236 51.3
ATR0210G010 Amborella trichopoda HOM05D005780 ORTHO05D007289 1.9e-61 240.0 193 61.1
Zm00001eb289450 Zea mays HOM05D005780 ORTHO05D007289 2.4e-61 239.6 225 55.1
Mapoly0001s0310 Marchantia polymorpha HOM05D005780 ORTHO05D007289 9.2e-61 237.7 186 60.8
Duzib114G0105 Durio zibethinus HOM05D005780 ORTHO05D007289 2.1e-60 236.5 161 70.8
CARHR207290 Cardamine hirsuta HOM05D005780 ORTHO05D007289 6.0e-60 235.0 214 54.7
Pp3c19_5660 Physcomitrium patens HOM05D005780 ORTHO05D007289 3.0e-59 232.6 185 60.0
AT5G05930 Arabidopsis thaliana HOM05D005780 ORTHO05D007289 8.6e-59 231.1 213 54.9
AagrBONN_evm.TU.Sc2ySwM_362.219 Anthoceros agrestis HOM05D005780 ORTHO05D007289 5.6e-58 228.4 184 58.2
CiPaw.01G293600 Carya illinoinensis HOM05D005780 ORTHO05D007289 1.8e-56 223.4 161 70.8
HPP92_015198 Vanilla planifolia HOM05D005780 ORTHO05D007289 1.2e-55 220.7 181 60.8
Eucgr.L02372 Eucalyptus grandis HOM05D005780 ORTHO05D007289 4.4e-55 218.8 161 66.5
THA.LOC104816572 Tarenaya hassleriana HOM05D005780 ORTHO05D007289 1.3e-54 217.2 161 64.6
Zm00001eb226980 Zea mays HOM05D005780 ORTHO05D007289 4.1e-53 212.2 192 56.2
Zm00001eb412440 Zea mays HOM05D005780 ORTHO05D007289 4.1e-53 212.2 181 59.1
Sed0009457 Sechium edule HOM05D005780 ORTHO05D007289 6.0e-52 208.4 152 66.4
FAN06G3968 Fragaria x ananassa HOM05D005780 ORTHO05D007289 3.9e-51 205.7 244 49.2
Eucgr.I02190 Eucalyptus grandis HOM05D005780 ORTHO05D007289 1.1e-50 204.1 161 62.7
SMO134G0044 Selaginella moellendorffii HOM05D005780 ORTHO05D007289 1.9e-50 203.4 182 56.6
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 9.5e-50 201.1 205 53.7
vmacro07012 Vaccinium macrocarpon HOM05D005780 ORTHO05D007289 1.3e-46 190.7 209 51.2
AUR62022803 Chenopodium quinoa HOM05D005780 ORTHO05D007289 4.6e-44 182.2 233 44.6
MELO3C008260.2 Cucumis melo HOM05D005780 ORTHO05D007289 4.6e-44 182.2 128 68.0
SGA_v2.0_scaffold76G25041 Striga asiatica HOM05D005780 ORTHO05D007289 1.3e-43 180.6 135 67.4
Pp3c22_3300 Physcomitrium patens HOM05D005780 ORTHO05D007289 1.5e-42 177.2 160 55.6
ClCG11G006480 Citrullus lanatus HOM05D005780 ORTHO05D007289 4.3e-42 175.6 201 49.3
AUR62012166 Chenopodium quinoa HOM05D005780 ORTHO05D007289 1.6e-41 173.7 233 43.8
FAN01G2814 Fragaria x ananassa HOM05D005780 ORTHO05D007289 4.7e-41 172.2 170 53.5
MCO05G626 Micromonas commoda HOM05D005780 ORTHO05D007289 8.4e-38 161.4 229 41.0
FAN06G4825 Fragaria x ananassa HOM05D005780 ORTHO05D007289 1.1e-37 161.0 184 48.9
FAN10G2246 Fragaria x ananassa HOM05D005780 ORTHO05D007289 1.4e-37 160.6 184 49.5
Cre10.g457450 Chlamydomonas reinhardtii HOM05D005780 ORTHO05D007289 1.9e-37 160.2 192 44.8
PRCOL_00006562 Prasinoderma coloniale HOM05D005780 ORTHO05D007289 4.2e-37 159.1 209 43.5
Aa31sc206G30 Aethionema arabicum HOM05D005780 ORTHO05D004826 3.5e-36 156.0 184 44.6
DCAR_024851 Daucus carota HOM05D005780 ORTHO05D007289 7.3e-34 148.3 135 54.8
Actinidia13899 Actinidia chinensis HOM05D005780 ORTHO05D007289 9.9e-31 137.9 160 51.2
CDE02G3808 Ceratophyllum demersum HOM05D005780 ORTHO05D007289 1.1e-26 124.4 100 63.0
Zm00001eb265730 Zea mays HOM05D003504 ORTHO05D004006 1.4e-21 107.5 131 45.8
Rhsim03G0138300 Rhododendron simsii HOM05D005780 ORTHO05D007289 2.8e-17 93.2 93 52.7
Zm00001eb137070 Zea mays HOM05D005780 ORTHO05D007289 1.7e-14 84.0 69 62.3
ClCG11G006490 Citrullus lanatus HOM05D005780 ORTHO05D007289 1.1e-13 81.3 126 38.1
SEGI_25575 Sequoiadendron giganteum HOM05D005780 ORTHO05D007289 2.1e-12 77.0 63 55.6
CDE02G3151 Ceratophyllum demersum HOM05D005780 ORTHO05D007289 6.0e-12 75.5 85 44.7
Os05g0453500 Oryza sativa ssp. japonica HOM05D005780 ORTHO05D007289 2.5e-10 70.1 93 43.0
Zm00001eb049210 Zea mays HOM05D001870 ORTHO05D001797 1.5e-07 60.8 64 46.9
Zm00001eb265170 Zea mays HOM05D001689 ORTHO05D001643 1.0e-06 58.2 88 39.8


User provided reference genes

Program Settings