Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 1.2e-129 466.5 231 100.0
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 8.8e-88 327.4 235 73.6
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 2.0e-71 273.1 171 79.5
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 2.6e-71 272.7 221 63.3
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 2.9e-70 269.2 217 64.5
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 6.4e-70 268.1 215 64.7
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 1.1e-69 267.3 223 61.0
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.2e-68 263.8 207 62.8
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 1.2e-68 263.8 207 63.3
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.5e-68 262.3 230 60.4
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.6e-68 261.9 230 60.4
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 4.6e-68 261.9 207 62.3
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 4.6e-68 261.9 207 62.3
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 4.6e-68 261.9 191 65.4
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 4.6e-68 261.9 200 64.0
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 6.0e-68 261.5 230 60.4
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.8e-68 261.2 230 60.4
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.8e-68 261.2 230 60.4
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 1.3e-67 260.4 205 64.4
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 3.0e-67 259.2 224 62.1
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 3.0e-67 259.2 203 65.0
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 3.0e-67 259.2 225 60.9
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 3.0e-67 259.2 223 58.7
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 3.0e-67 259.2 196 63.8
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 3.0e-67 259.2 196 63.8
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 3.9e-67 258.8 196 64.8
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 3.9e-67 258.8 205 62.4
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 3.9e-67 258.8 203 64.5
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 3.9e-67 258.8 218 60.6
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 6.6e-67 258.1 213 62.4
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 6.6e-67 258.1 230 60.0
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 8.6e-67 257.7 198 64.1
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 1.1e-66 257.3 199 64.8
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 1.1e-66 257.3 194 66.5
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 1.1e-66 257.3 192 64.1
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 1.9e-66 256.5 227 60.4
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.9e-66 256.5 220 60.0
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 1.9e-66 256.5 204 63.7
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 2.5e-66 256.1 216 64.4
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 2.5e-66 256.1 216 64.4
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 2.5e-66 256.1 214 63.1
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 2.5e-66 256.1 197 63.5
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 3.3e-66 255.8 202 63.9
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 4.3e-66 255.4 202 64.4
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 4.3e-66 255.4 197 63.5
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 4.3e-66 255.4 195 64.1
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 5.6e-66 255.0 226 59.3
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 5.6e-66 255.0 228 58.3
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 7.3e-66 254.6 197 64.0
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 7.3e-66 254.6 182 67.6
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 7.3e-66 254.6 221 60.6
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 1.2e-65 253.8 215 61.4
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 1.2e-65 253.8 213 59.6
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.6e-65 253.4 215 59.5
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 2.1e-65 253.1 195 65.1
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 2.1e-65 253.1 209 61.2
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.6e-65 252.3 230 58.7
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.6e-65 252.3 230 58.7
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 3.6e-65 252.3 202 61.9
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 3.6e-65 252.3 224 58.9
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 4.7e-65 251.9 204 61.8
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 4.7e-65 251.9 209 62.2
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 4.7e-65 251.9 204 62.3
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 8.0e-65 251.1 192 63.5
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 1.8e-64 250.0 195 63.1
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 3.1e-64 249.2 208 60.6
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 3.1e-64 249.2 208 60.6
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 3.1e-64 249.2 217 59.9
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 4.0e-64 248.8 233 59.7
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 4.0e-64 248.8 193 66.3
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 4.0e-64 248.8 217 59.9
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 6.8e-64 248.1 217 59.4
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 6.8e-64 248.1 229 59.0
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 8.9e-64 247.7 198 61.6
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 2.0e-63 246.5 200 63.0
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 2.0e-63 246.5 220 60.0
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 2.6e-63 246.1 235 56.2
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 2.6e-63 246.1 199 62.8
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 4.4e-63 245.4 209 59.3
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 4.4e-63 245.4 196 60.7
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 7.5e-63 244.6 208 59.6
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 7.5e-63 244.6 206 61.2
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 9.8e-63 244.2 186 62.9
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 1.7e-62 243.4 195 60.5
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 2.9e-62 242.7 200 59.5
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 6.4e-62 241.5 178 65.2
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 1.9e-61 240.0 194 61.9
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 2.4e-61 239.6 198 58.6
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 5.4e-61 238.4 192 60.9
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 5.4e-61 238.4 192 60.9
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 9.2e-61 237.7 211 59.2
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 9.2e-61 237.7 192 60.9
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 9.2e-61 237.7 192 60.9
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 9.2e-61 237.7 194 61.9
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 1.2e-60 237.3 214 58.9
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 2.1e-60 236.5 192 60.4
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 2.1e-60 236.5 213 57.7
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 2.7e-60 236.1 194 60.3
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 2.7e-60 236.1 194 60.3
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 4.6e-60 235.3 207 57.0
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 4.6e-60 235.3 204 58.3
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 7.8e-60 234.6 194 61.3
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 7.8e-60 234.6 208 58.2
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 7.8e-60 234.6 222 56.8
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 1.0e-59 234.2 194 59.8
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 1.0e-59 234.2 194 59.8
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 1.0e-59 234.2 194 59.8
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 1.0e-59 234.2 189 61.9
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 1.3e-59 233.8 193 60.1
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 3.0e-59 232.6 192 60.9
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 3.9e-59 232.3 192 60.4
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 5.1e-59 231.9 192 60.9
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 5.1e-59 231.9 186 61.8
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 5.1e-59 231.9 202 60.4
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 6.6e-59 231.5 216 57.4
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.1e-58 230.7 228 56.6
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 4.3e-58 228.8 217 57.1
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 2.8e-57 226.1 183 60.7
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 3.6e-57 225.7 222 55.4
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 8.1e-57 224.6 180 61.1
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 1.4e-56 223.8 189 59.8
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 5.2e-56 221.9 189 59.3
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 1.7e-54 216.9 191 58.1
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 3.0e-51 206.1 199 53.3
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 4.7e-49 198.7 134 70.9
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 2.0e-47 193.4 196 49.5
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 1.7e-46 190.3 161 60.2
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 2.9e-46 189.5 164 58.5
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 1.6e-44 183.7 144 66.0
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 2.1e-44 183.3 219 50.7
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 1.2e-41 174.1 127 68.5
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 8.4e-38 161.4 198 48.0
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 7.1e-37 158.3 112 64.3
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 2.3e-35 153.3 209 45.0
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 2.5e-34 149.8 103 66.0
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 9.9e-31 137.9 92 67.4
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 2.9e-30 136.3 125 58.4
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 4.2e-29 132.5 94 64.9
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 4.9e-14 82.4 62 61.3
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 4.6e-12 75.9 49 69.4
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 2.9e-06 56.6 74 32.4
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 2.9e-06 56.6 74 32.4


User provided reference genes

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