Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g100750 Amaranthus hybridus HOM05D000926 ORTHO05D000707 2.3e-37 158.7 98 100.0
Ah.10g038420 Amaranthus hybridus HOM05D000926 ORTHO05D000707 2.6e-20 102.1 91 70.3
EL10Ac2g04399 Beta vulgaris HOM05D000926 ORTHO05D000707 7.7e-17 90.5 92 66.3
AUR62023119 Chenopodium quinoa HOM05D000926 ORTHO05D000707 2.7e-14 82.0 93 44.1
AUR62009441 Chenopodium quinoa HOM05D000926 ORTHO05D000707 1.8e-13 79.3 94 44.7
Haze_14349 Corylus avellana HOM05D000926 ORTHO05D000707 4.1e-10 68.2 79 48.1
Sc10g0000430 Simmondsia chinensis HOM05D000926 ORTHO05D000707 4.1e-10 68.2 93 41.9
Glyma.19G038700 Glycine max HOM05D000926 ORTHO05D000707 5.4e-10 67.8 88 39.8
MSTRG.2959 Avicennia marina HOM05D000926 ORTHO05D000707 2.0e-09 65.9 77 44.2
Sabra17G0090100 Salix brachista HOM05D000926 ORTHO05D000707 2.0e-09 65.9 80 46.2
Cpa.g.sc70.7 Carica papaya HOM05D000926 ORTHO05D000707 3.5e-09 65.1 92 40.2
CiPaw.03G080100 Carya illinoinensis HOM05D000926 ORTHO05D000707 3.5e-09 65.1 81 45.7
Glyma.18G277600 Glycine max HOM05D000926 ORTHO05D000707 3.5e-09 65.1 83 41.0
CSS0017323 Camellia sinensis var. sinensis HOM05D000926 ORTHO05D000707 4.5e-09 64.7 88 55.7
Glyma.18G277800 Glycine max HOM05D000926 ORTHO05D000707 4.5e-09 64.7 96 53.1
Phvul.008G023400 Phaseolus vulgaris HOM05D000926 ORTHO05D000707 4.5e-09 64.7 82 40.2
TAR374G1048 Trochodendron aralioides HOM05D000926 ORTHO05D000707 4.5e-09 64.7 78 42.3
Dinv33888 Davidia involucrata HOM05D000926 ORTHO05D000707 5.9e-09 64.3 89 46.1
Dinv34883 Davidia involucrata HOM05D000926 ORTHO05D000707 7.7e-09 63.9 87 42.5
Cfa007731 Carpinus fangiana HOM05D000926 ORTHO05D000707 1.0e-08 63.5 79 44.3
Glyma.08G254900 Glycine max HOM05D000926 ORTHO05D000707 1.0e-08 63.5 95 50.5
TAR629G1973 Trochodendron aralioides HOM05D000926 ORTHO05D000707 1.0e-08 63.5 79 48.1
Lalb_Chr10g0092471 Lupinus albus HOM05D000926 ORTHO05D000707 1.3e-08 63.2 76 46.1
Manes.01G105800 Manihot esculenta HOM05D000926 ORTHO05D000707 1.3e-08 63.2 75 42.7
Thecc.04G113000 Theobroma cacao HOM05D000926 ORTHO05D000707 1.3e-08 63.2 77 45.5
Duzib138G1671 Durio zibethinus HOM05D000926 ORTHO05D000707 1.7e-08 62.8 77 44.2
MD09G1078900 Malus domestica HOM05D000926 ORTHO05D000707 1.7e-08 62.8 92 41.3
Oeu049341.1 Olea europaea HOM05D000926 ORTHO05D000707 1.7e-08 62.8 77 45.5
CARHR188520 Cardamine hirsuta HOM05D000926 ORTHO05D000707 2.2e-08 62.4 94 37.2
FAN05G2016 Fragaria x ananassa HOM05D000926 ORTHO05D000707 2.2e-08 62.4 84 38.1
Glyma.08G254800 Glycine max HOM05D000926 ORTHO05D000707 2.2e-08 62.4 83 39.8
Prupe.3G245300 Prunus persica HOM05D000926 ORTHO05D000707 2.2e-08 62.4 94 47.9
FvH4_6g45911 Fragaria vesca HOM05D000926 ORTHO05D000707 3.8e-08 61.6 84 36.9
FAN02G4043 Fragaria x ananassa HOM05D000926 ORTHO05D000707 3.8e-08 61.6 82 39.0
Lalb_Chr21g0318771 Lupinus albus HOM05D000926 ORTHO05D000707 3.8e-08 61.6 79 44.3
Potri.004G108440 Populus trichocarpa HOM05D000926 ORTHO05D000707 3.8e-08 61.6 82 43.9
Rhsim08G0078900 Rhododendron simsii HOM05D000926 ORTHO05D000707 3.8e-08 61.6 77 45.5
TPR.G3253 Trifolium pratense HOM05D000926 ORTHO05D000707 3.8e-08 61.6 85 37.6
Gohir.D07G185000 Gossypium hirsutum HOM05D000926 ORTHO05D000707 5.0e-08 61.2 82 41.5
Gorai.001G205500 Gossypium raimondii HOM05D000926 ORTHO05D000707 5.0e-08 61.2 82 41.5
Lj1g0009060 Lotus japonicus HOM05D000926 ORTHO05D000707 5.0e-08 61.2 76 42.1
Gohir.A07G178200 Gossypium hirsutum HOM05D000926 ORTHO05D000707 6.5e-08 60.8 82 41.5
EL10Ac8g18258 Beta vulgaris HOM05D000926 ORTHO05D000707 8.5e-08 60.5 84 42.9
Manes.01G105900 Manihot esculenta HOM05D000926 ORTHO05D000707 8.5e-08 60.5 77 45.5
AT5G24920 Arabidopsis thaliana HOM05D000926 ORTHO05D000707 1.1e-07 60.1 99 36.4
MSTRG.2960 Avicennia marina HOM05D000926 ORTHO05D000707 1.1e-07 60.1 84 40.5
ECA232G3566 Erigeron canadensis HOM05D000926 ORTHO05D000707 1.1e-07 60.1 86 38.4
Hma1.2p1_0588F.1_g184540 Hydrangea macrophylla HOM05D000926 ORTHO05D000707 1.1e-07 60.1 78 47.4
Hma1.2p1_2231F.1_g317580 Hydrangea macrophylla HOM05D000926 ORTHO05D000707 1.1e-07 60.1 76 43.4
Manes.02G062400 Manihot esculenta HOM05D000926 ORTHO05D000707 1.1e-07 60.1 77 42.9
Manes.02G062600 Manihot esculenta HOM05D000926 ORTHO05D000707 1.1e-07 60.1 82 40.2
QL02p063891 Quercus lobata HOM05D000926 ORTHO05D000707 1.5e-07 59.7 92 41.3
SalBow1G1369 Salvia bowleyana HOM05D000926 ORTHO05D000707 1.5e-07 59.7 78 44.9
AL6G36590 Arabidopsis lyrata HOM05D000926 ORTHO05D000707 1.9e-07 59.3 98 36.7
MD08G1049400 Malus domestica HOM05D000926 ORTHO05D000707 1.9e-07 59.3 86 41.9
Potri.017G107200 Populus trichocarpa HOM05D000926 ORTHO05D000707 1.9e-07 59.3 80 41.2
MSTRG.3384 Avicennia marina HOM05D000926 ORTHO05D000707 2.5e-07 58.9 81 40.7
Dinv38621 Davidia involucrata HOM05D000926 ORTHO05D000707 2.5e-07 58.9 76 43.4
PSO478G4837 Papaver somniferum HOM05D000926 ORTHO05D000707 2.5e-07 58.9 103 35.0
Duzib211G0100 Durio zibethinus HOM05D000926 ORTHO05D000707 3.2e-07 58.5 76 43.4
PSO017G6561 Papaver somniferum HOM05D000926 ORTHO05D000707 3.2e-07 58.5 103 36.9
Ciclev10013138m.g Citrus clementina HOM05D000926 ORTHO05D000707 4.2e-07 58.2 81 39.5
Lalb_Chr10g0092481 Lupinus albus HOM05D000926 ORTHO05D000707 4.2e-07 58.2 81 39.5
Medtr6g016480 Medicago truncatula HOM05D000926 ORTHO05D000707 4.2e-07 58.2 76 48.7
Sed0009643 Sechium edule HOM05D000926 ORTHO05D000707 4.2e-07 58.2 86 39.5
ATR0580G037 Amborella trichopoda HOM05D000926 ORTHO05D000707 5.5e-07 57.8 93 36.6
arahy.Tifrunner.gnm1.ann1.BGLY17 Arachis hypogaea HOM05D000926 ORTHO05D000707 5.5e-07 57.8 95 47.4
Carub.0006s2278 Capsella rubella HOM05D000926 ORTHO05D000707 5.5e-07 57.8 90 36.7
CiPaw.03G077200 Carya illinoinensis HOM05D000926 ORTHO05D000707 5.5e-07 57.8 83 37.3
DCAR_007536 Daucus carota HOM05D000926 ORTHO05D000707 5.5e-07 57.8 79 40.5
DCAR_007538 Daucus carota HOM05D000926 ORTHO05D000707 5.5e-07 57.8 79 40.5
Migut.K00874 Erythranthe guttata HOM05D000926 ORTHO05D000707 5.5e-07 57.8 81 46.9
Nn8g40369 Nelumbo nucifera HOM05D000926 ORTHO05D000707 5.5e-07 57.8 91 37.4
Oeu032853.1 Olea europaea HOM05D000926 ORTHO05D000707 5.5e-07 57.8 77 41.6
Potri.017G107300 Populus trichocarpa HOM05D000926 ORTHO05D000707 5.5e-07 57.8 81 43.2
SalBow1G7500 Salvia bowleyana HOM05D000926 ORTHO05D000707 5.5e-07 57.8 77 41.6
Eucgr.J01437 Eucalyptus grandis HOM05D000926 ORTHO05D000707 7.2e-07 57.4 76 40.8
HanXRQChr09g0263311 Helianthus annuus HOM05D000926 ORTHO05D000707 7.2e-07 57.4 85 42.4
Lju361C12T10 Lonicera japonica HOM05D000926 ORTHO05D000707 7.2e-07 57.4 79 54.4
Lj1g0010988 Lotus japonicus HOM05D000926 ORTHO05D000707 7.2e-07 57.4 79 50.6
Phvul.004G046300 Phaseolus vulgaris HOM05D000926 ORTHO05D000707 7.2e-07 57.4 73 42.5
SEGI_13603 Sequoiadendron giganteum HOM05D000926 ORTHO05D000707 7.2e-07 57.4 88 34.1
BcaC06g33728 Brassica carinata HOM05D015998 ORTHO05D000707 9.4e-07 57.0 89 38.2
Eucgr.J01438 Eucalyptus grandis HOM05D000926 ORTHO05D000707 9.4e-07 57.0 83 44.6
Lj1g0022964 Lotus japonicus HOM05D000926 ORTHO05D000707 9.4e-07 57.0 97 38.1
PGR004G2735 Punica granatum HOM05D000926 ORTHO05D000707 9.4e-07 57.0 75 42.7
RcHm_v2.0_Chr2g0164101 Rosa chinensis HOM05D000926 ORTHO05D000707 9.4e-07 57.0 85 35.3
Sp2g22530 Schrenkiella parvula HOM05D000926 ORTHO05D000707 9.4e-07 57.0 89 37.1
Aqoxy7G02467 Aquilegia oxysepala HOM05D000926 ORTHO05D000707 1.2e-06 56.6 92 40.2
A06p35710 Brassica napus HOM05D000926 ORTHO05D000707 1.2e-06 56.6 95 37.9
BraA06t26495Z Brassica rapa HOM05D000926 ORTHO05D000707 1.2e-06 56.6 95 37.9
CiPaw.03G080300 Carya illinoinensis HOM05D000926 ORTHO05D000707 1.2e-06 56.6 83 37.3
Eucgr.J01435 Eucalyptus grandis HOM05D000926 ORTHO05D000707 1.2e-06 56.6 76 40.8
Lsat_1_v5_gn_4_174621 Lactuca sativa HOM05D000926 ORTHO05D000707 1.2e-06 56.6 85 41.2
HPP92_005300 Vanilla planifolia HOM05D000926 ORTHO05D000707 1.2e-06 56.6 80 40.0
Cfa007730 Carpinus fangiana HOM05D000926 ORTHO05D000707 1.6e-06 56.2 79 39.2
HanXRQChr14g0439461 Helianthus annuus HOM05D000926 ORTHO05D000707 1.6e-06 56.2 86 38.4
Lj1g0017144 Lotus japonicus HOM05D000926 ORTHO05D000707 1.6e-06 56.2 89 39.3
Lalb_Chr14g0375401 Lupinus albus HOM05D000926 ORTHO05D000707 1.6e-06 56.2 86 38.4
MD17G1069200 Malus domestica HOM05D000926 ORTHO05D000707 1.6e-06 56.2 87 36.8
Rhsim07G0168600 Rhododendron simsii HOM05D000926 ORTHO05D000707 1.6e-06 56.2 83 38.6
TWI34G1370 Tripterygium wilfordii HOM05D000926 ORTHO05D000707 1.6e-06 56.2 82 37.8
Aa31LG9G16890 Aethionema arabicum HOM05D000926 ORTHO05D000707 2.1e-06 55.8 79 40.5
C07p42830 Brassica napus HOM05D000926 ORTHO05D000707 2.1e-06 55.8 86 37.2
BolC7t44811H Brassica oleracea HOM05D000926 ORTHO05D000707 2.1e-06 55.8 86 37.2
Medtr0542s0020 Medicago truncatula HOM05D000926 ORTHO05D000707 2.1e-06 55.8 88 36.4
Solyc02g089480.1 Solanum lycopersicum HOM05D000926 ORTHO05D000707 2.1e-06 55.8 100 36.0
Sopen02g034220 Solanum pennellii HOM05D000926 ORTHO05D000707 2.1e-06 55.8 100 36.0
THA.LOC109116337 Tarenaya hassleriana HOM05D000926 ORTHO05D000707 2.1e-06 55.8 88 37.5
Aqoxy3G00596 Aquilegia oxysepala HOM05D000926 ORTHO05D000707 2.7e-06 55.5 80 40.0
Ca_15794_v3 Cicer arietinum L. HOM05D000926 ORTHO05D000707 2.7e-06 55.5 89 38.2
Cc07_g04740 Coffea canephora HOM05D000926 ORTHO05D000707 2.7e-06 55.5 90 46.7
Thhalv10005084m.g Eutrema salsugineum HOM05D000926 ORTHO05D000707 2.7e-06 55.5 88 34.1
Manes.01G106100 Manihot esculenta HOM05D000926 ORTHO05D000707 2.7e-06 55.5 82 39.0
Medtr3g105690 Medicago truncatula HOM05D000926 ORTHO05D000707 2.7e-06 55.5 97 37.1
Psat0s1897g0040 Pisum sativum HOM05D000926 ORTHO05D000707 2.7e-06 55.5 77 40.3
QL02p063866 Quercus lobata HOM05D000926 ORTHO05D000707 2.7e-06 55.5 80 56.2
BcaNung05642 Brassica carinata HOM05D000926 ORTHO05D000707 3.6e-06 55.1 88 39.8
MBI15_g03197_MAGBIO Magnolia biondii HOM05D000926 ORTHO05D000707 3.6e-06 55.1 78 37.2
PSO170G4593 Papaver somniferum HOM05D000926 ORTHO05D000707 3.6e-06 55.1 83 39.8
Psat1g064800 Pisum sativum HOM05D000926 ORTHO05D000707 3.6e-06 55.1 87 47.1
Potri.004G108680 Populus trichocarpa HOM05D000926 ORTHO05D000707 3.6e-06 55.1 80 40.0
Sp2g18220 Schrenkiella parvula HOM05D000926 ORTHO05D000707 3.6e-06 55.1 89 41.6
SEGI_38492 Sequoiadendron giganteum HOM05D000926 ORTHO05D000707 3.6e-06 55.1 80 38.8
VMungo1383G3177 Vigna mungo HOM05D000926 ORTHO05D000707 3.6e-06 55.1 85 51.8
GSVIVG01036505001 Vitis vinifera HOM05D000926 ORTHO05D000707 3.6e-06 55.1 78 42.3
Ah.09g229670 Amaranthus hybridus HOM05D000926 ORTHO05D000707 4.7e-06 54.7 90 35.6
FAN17G1743 Fragaria x ananassa HOM05D000926 ORTHO05D000707 4.7e-06 54.7 87 39.1
Medtr7g018090 Medicago truncatula HOM05D000926 ORTHO05D000707 4.7e-06 54.7 78 41.0
Potri.017G107400 Populus trichocarpa HOM05D000926 ORTHO05D000707 4.7e-06 54.7 82 37.8
PGR042G1069 Punica granatum HOM05D000926 ORTHO05D000707 4.7e-06 54.7 77 39.0
PGR044G0045 Punica granatum HOM05D000926 ORTHO05D000707 4.7e-06 54.7 82 40.2
Sabra04G0074000 Salix brachista HOM05D000926 ORTHO05D000707 4.7e-06 54.7 80 40.0
VMungo1309G0762 Vigna mungo HOM05D000926 ORTHO05D000707 4.7e-06 54.7 93 38.7
EL10Ac2g04400 Beta vulgaris HOM05D000926 ORTHO05D000707 6.1e-06 54.3 86 37.2
BcaC06g30841 Brassica carinata HOM05D000926 ORTHO05D000707 6.1e-06 54.3 91 39.6
ClCG08G013870 Citrullus lanatus HOM05D000926 ORTHO05D000707 6.1e-06 54.3 93 36.6
Lalb_Chr11g0063451 Lupinus albus HOM05D000926 ORTHO05D000707 6.1e-06 54.3 89 39.3
Sabra04G0073900 Salix brachista HOM05D000926 ORTHO05D000707 6.1e-06 54.3 78 38.5
A01p17000 Brassica napus HOM05D000926 ORTHO05D000707 8.0e-06 53.9 81 40.7
A06p39650 Brassica napus HOM05D000926 ORTHO05D000707 8.0e-06 53.9 91 38.5
BraA01t01656Z Brassica rapa HOM05D000926 ORTHO05D000707 8.0e-06 53.9 81 40.7
BraA06t26880Z Brassica rapa HOM05D000926 ORTHO05D000707 8.0e-06 53.9 91 38.5
CDE04G3009 Ceratophyllum demersum HOM05D000926 ORTHO05D000707 8.0e-06 53.9 85 37.6
Glyma.06G059500 Glycine max HOM05D000926 ORTHO05D000707 8.0e-06 53.9 88 39.8
Medtr1g013410 Medicago truncatula HOM05D000926 ORTHO05D000707 8.0e-06 53.9 85 38.8
Nn4g23604 Nelumbo nucifera HOM05D000926 ORTHO05D000707 8.0e-06 53.9 77 33.8
Phvul.009G085200 Phaseolus vulgaris HOM05D000926 ORTHO05D000707 8.0e-06 53.9 93 36.6


User provided reference genes

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