Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g100330 Amaranthus hybridus HOM05D005281 ORTHO05D013988 4.0e-120 434.9 234 100.0
EL10Ac7g16168 Beta vulgaris HOM05D005281 ORTHO05D006351 2.2e-46 189.9 203 59.6
AUR62001645 Chenopodium quinoa HOM05D005281 ORTHO05D006351 5.0e-46 188.7 204 59.3
AUR62020131 Chenopodium quinoa HOM05D005281 ORTHO05D006351 8.5e-46 188.0 161 66.5
Hund04860 Selenicereus undatus HOM05D005281 ORTHO05D006351 3.0e-35 152.9 204 51.5
Sc21g0006330 Simmondsia chinensis HOM05D005281 ORTHO05D006351 7.0e-32 141.7 204 50.5
Potri.009G046300 Populus trichocarpa HOM05D005281 ORTHO05D006351 8.0e-28 128.3 173 46.8
Actinidia23889 Actinidia chinensis HOM05D005281 ORTHO05D006351 8.8e-27 124.8 197 46.7
Lj1C137G10 Lonicera japonica HOM05D005281 ORTHO05D006351 5.7e-26 122.1 200 46.0
Nitab4.5_0005463g0020 Nicotiana tabacum HOM05D005281 ORTHO05D006351 1.3e-25 120.9 207 44.4
Dinv14436 Davidia involucrata HOM05D005281 ORTHO05D006351 2.8e-25 119.8 184 45.7
Hma1.2p1_0962F.1_g241910 Hydrangea macrophylla HOM05D005281 ORTHO05D006351 3.1e-24 116.3 210 41.9
Sabra09G0033400 Salix brachista HOM05D005281 ORTHO05D006351 9.1e-24 114.8 211 40.3
Nitab4.5_0000102g0060 Nicotiana tabacum HOM05D005281 ORTHO05D006351 1.2e-23 114.4 207 44.0
vmacro14592 Vaccinium macrocarpon HOM05D005281 ORTHO05D006351 2.0e-23 113.6 200 42.5
Oeu045534.1 Olea europaea HOM05D005281 ORTHO05D006351 1.0e-22 111.3 201 40.8
CSS0029995 Camellia sinensis var. sinensis HOM05D005281 ORTHO05D006351 1.7e-22 110.5 197 41.6
Nn2g11502 Nelumbo nucifera HOM05D005281 ORTHO05D006351 2.9e-22 109.8 179 41.3
Sopen06g002070 Solanum pennellii HOM05D005281 ORTHO05D006351 5.0e-22 109.0 202 44.6
Manes.01G161500 Manihot esculenta HOM05D005281 ORTHO05D006351 1.1e-21 107.8 200 38.5
THA.LOC104799394 Tarenaya hassleriana HOM05D005281 ORTHO05D006351 2.5e-21 106.7 226 40.7
PGSC0003DMG400004159 Solanum tuberosum HOM05D005281 ORTHO05D006351 3.2e-21 106.3 203 43.3
Rhsim01G0236400 Rhododendron simsii HOM05D005281 ORTHO05D006351 4.2e-21 105.9 235 37.4
CAN.G1213.5 Capsicum annuum HOM05D005281 ORTHO05D006351 7.2e-21 105.1 205 40.0
TAR633G1154 Trochodendron aralioides HOM05D005281 ORTHO05D006351 7.2e-21 105.1 233 39.5
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 9.4e-21 104.8 186 40.9
Ciclev10028198m.g Citrus clementina HOM05D005281 ORTHO05D006351 9.4e-21 104.8 205 42.4
Lj6g0025988 Lotus japonicus HOM05D005281 ORTHO05D006351 4.7e-20 102.4 162 45.7
Prupe.6G057400 Prunus persica HOM05D005281 ORTHO05D006351 4.7e-20 102.4 199 41.2
QL01p038286 Quercus lobata HOM05D005281 ORTHO05D006351 4.7e-20 102.4 206 39.8
COL.COLO4_19159 Corchorus olitorius HOM05D005281 ORTHO05D006351 6.1e-20 102.1 164 46.3
CiPaw.14G059500 Carya illinoinensis HOM05D005281 ORTHO05D006351 8.0e-20 101.7 209 41.6
SGA_v2.0_scaffold120G32911 Striga asiatica HOM05D005281 ORTHO05D006351 8.0e-20 101.7 209 40.2
GSVIVG01024739001 Vitis vinifera HOM05D005281 ORTHO05D006351 8.0e-20 101.7 158 45.6
MD11G1074600 Malus domestica HOM05D005281 ORTHO05D006351 1.4e-19 100.9 172 46.5
Cc01_g14190 Coffea canephora HOM05D005281 ORTHO05D006351 6.8e-19 98.6 172 45.3
Migut.N00784 Erythranthe guttata HOM05D005281 ORTHO05D006351 8.8e-19 98.2 197 37.6
CANSAT54G2372 Cannabis sativa HOM05D005281 ORTHO05D006351 5.7e-18 95.5 207 37.2
Thecc.09G301700 Theobroma cacao HOM05D005281 ORTHO05D006351 5.7e-18 95.5 208 41.3
Medtr3g463770 Medicago truncatula HOM05D005281 ORTHO05D006351 1.7e-17 94.0 179 44.1
Haze_24325 Corylus avellana HOM05D005281 ORTHO05D006351 6.3e-17 92.0 207 38.6
MD03G1070600 Malus domestica HOM05D005281 ORTHO05D006351 1.1e-16 91.3 206 37.9
Aa31LG11G480 Aethionema arabicum HOM05D005281 ORTHO05D006351 1.4e-16 90.9 168 42.3
Glyma.11G175400 Glycine max HOM05D005281 ORTHO05D006351 1.4e-16 90.9 162 42.6
DCAR_007376 Daucus carota HOM05D005281 ORTHO05D006351 1.8e-16 90.5 159 42.8
Phvul.006G068100 Phaseolus vulgaris HOM05D005281 ORTHO05D006351 3.1e-16 89.7 211 37.9
Cpa.g.sc415.3 Carica papaya HOM05D005281 ORTHO05D006351 5.4e-16 89.0 210 38.6
Duzib168G1083 Durio zibethinus HOM05D005281 ORTHO05D006351 5.4e-16 89.0 211 39.3
Lalb_Chr18g0050941 Lupinus albus HOM05D005281 ORTHO05D006351 5.4e-16 89.0 176 40.3
AT5G58720 Arabidopsis thaliana HOM05D005281 ORTHO05D006351 1.2e-15 87.8 213 40.8
Thhalv10013268m.g Eutrema salsugineum HOM05D005281 ORTHO05D006351 1.2e-15 87.8 196 41.3
FAN21G2151 Fragaria x ananassa HOM05D005281 ORTHO05D006351 1.2e-15 87.8 210 38.6
AL8G35000 Arabidopsis lyrata HOM05D005281 ORTHO05D006351 1.6e-15 87.4 217 40.1
Ca_14931_v3 Cicer arietinum L. HOM05D005281 ORTHO05D006351 1.6e-15 87.4 174 42.0
FAN25G0418 Fragaria x ananassa HOM05D005281 ORTHO05D006351 4.5e-15 85.9 230 36.1
SalBow2G0889 Salvia bowleyana HOM05D005281 ORTHO05D006351 4.5e-15 85.9 198 36.4
CARHR272630 Cardamine hirsuta HOM05D005281 ORTHO05D006351 7.7e-15 85.1 169 44.4
FAN11G1688 Fragaria x ananassa HOM05D005281 ORTHO05D006351 1.3e-14 84.3 209 37.3
Atru.chr3.4219 Acer truncatum HOM05D005281 ORTHO05D006351 1.7e-14 84.0 150 42.0
Duzib150G1450 Durio zibethinus HOM05D005281 ORTHO05D006351 1.7e-14 84.0 165 39.4
FvH4_3g38560 Fragaria vesca HOM05D005281 ORTHO05D006351 1.7e-14 84.0 234 35.5
Eucgr.J01912 Eucalyptus grandis HOM05D005281 ORTHO05D006351 2.3e-14 83.6 218 33.9
HanXRQChr08g0229401 Helianthus annuus HOM05D005281 ORTHO05D006351 3.8e-14 82.8 97 53.6
Gohir.D07G108000 Gossypium hirsutum HOM05D005281 ORTHO05D006351 8.6e-14 81.6 214 35.5
Psat5g159280 Pisum sativum HOM05D005281 ORTHO05D006351 8.6e-14 81.6 176 40.3
BcaB01g04640 Brassica carinata HOM05D005281 ORTHO05D006351 1.1e-13 81.3 165 40.6
Carub.0008s1934 Capsella rubella HOM05D005281 ORTHO05D006351 1.1e-13 81.3 221 39.8
PSO384G0667 Papaver somniferum HOM05D005281 ORTHO05D006351 1.5e-13 80.9 216 36.1
BcaC03g14078 Brassica carinata HOM05D005281 ORTHO05D006351 2.5e-13 80.1 184 41.3
Gorai.001G116100 Gossypium raimondii HOM05D005281 ORTHO05D006351 2.5e-13 80.1 219 35.2
RcHm_v2.0_Chr5g0069461 Rosa chinensis HOM05D005281 ORTHO05D006351 4.2e-13 79.3 222 33.3
BolC3t13861H Brassica oleracea HOM05D005281 ORTHO05D006351 5.5e-13 79.0 203 37.4
BraA03t10518Z Brassica rapa HOM05D005281 ORTHO05D006351 5.5e-13 79.0 190 38.9
C02p13130 Brassica napus HOM05D005281 ORTHO05D006351 7.2e-13 78.6 177 41.2
BolC2t07431H Brassica oleracea HOM05D005281 ORTHO05D006351 7.2e-13 78.6 177 41.2
BcaB05g22447 Brassica carinata HOM05D005281 ORTHO05D006351 9.5e-13 78.2 175 41.1
A02p07560 Brassica napus HOM05D005281 ORTHO05D006351 9.5e-13 78.2 186 40.9
Gohir.A07G104200 Gossypium hirsutum HOM05D005281 ORTHO05D006351 9.5e-13 78.2 214 35.0
BraA02t05834Z Brassica rapa HOM05D005281 ORTHO05D006351 1.2e-12 77.8 186 40.3
PGR119G1117 Punica granatum HOM05D005281 ORTHO05D006351 1.2e-12 77.8 164 37.2
VMungo0540G0631 Vigna mungo HOM05D005281 ORTHO05D006351 1.2e-12 77.8 167 38.9
Sp6g20410 Schrenkiella parvula HOM05D005281 ORTHO05D006351 2.1e-12 77.0 209 37.8
TWI31G0978 Tripterygium wilfordii HOM05D005281 ORTHO05D006351 2.1e-12 77.0 216 36.1
FAN16G1244 Fragaria x ananassa HOM05D005281 ORTHO05D006351 2.8e-12 76.6 214 36.4
Glyma.18G063000 Glycine max HOM05D005281 ORTHO05D006351 2.8e-12 76.6 205 36.6
C03p14150 Brassica napus HOM05D005281 ORTHO05D006351 4.7e-12 75.9 214 38.3
TPR.G21171 Trifolium pratense HOM05D005281 ORTHO05D006351 6.1e-12 75.5 173 37.6
A03p12060 Brassica napus HOM05D005281 ORTHO05D006351 1.4e-11 74.3 208 37.0
PSO339G3076 Papaver somniferum HOM05D005281 ORTHO05D006351 3.0e-11 73.2 208 34.6
Lsat_1_v5_gn_9_20081 Lactuca sativa HOM05D005281 ORTHO05D006351 4.0e-11 72.8 132 41.7
Sed0014563 Sechium edule HOM05D005281 ORTHO05D006351 5.2e-11 72.4 206 33.0
ECA247G0807 Erigeron canadensis HOM05D005281 ORTHO05D006351 2.6e-10 70.1 100 51.0
Zm00001eb119510 Zea mays HOM05D005281 ORTHO05D006351 3.4e-10 69.7 169 37.9
Os01g0225100 Oryza sativa ssp. japonica HOM05D013050 ORTHO05D013988 4.4e-10 69.3 168 37.5
Peaxi162Scf00025g00089 Petunia axillaris HOM05D005281 ORTHO05D006351 5.7e-10 68.9 140 40.0
Aqoxy4G02562 Aquilegia oxysepala HOM05D005281 ORTHO05D006351 1.3e-09 67.8 154 36.4
ClCG02G019550 Citrullus lanatus HOM05D005281 ORTHO05D006351 1.7e-09 67.4 204 31.9
PSO384G3120 Papaver somniferum HOM05D005281 ORTHO05D006351 4.9e-09 65.9 89 44.9
Zm00001eb105920 Zea mays HOM05D013050 ORTHO05D013988 4.9e-09 65.9 90 47.8
arahy.Tifrunner.gnm1.ann1.UVB96A Arachis hypogaea HOM05D005281 ORTHO05D006351 6.3e-09 65.5 164 36.6
arahy.Tifrunner.gnm1.ann1.EQN3LQ Arachis hypogaea HOM05D005281 ORTHO05D006351 1.4e-08 64.3 164 36.6
Zm00001eb434110 Zea mays HOM05D013050 ORTHO05D013988 1.4e-08 64.3 88 48.9
Zm00001eb430140 Zea mays HOM05D013050 ORTHO05D013988 4.1e-08 62.8 88 48.9
Zm00001eb313040 Zea mays HOM05D013050 ORTHO05D013988 1.2e-07 61.2 74 51.4
HPP92_005265 Vanilla planifolia HOM05D005281 ORTHO05D006351 2.7e-07 60.1 165 32.7
CsaV3_6G016220 Cucumis sativus L. HOM05D005281 ORTHO05D006351 1.0e-06 58.2 206 32.0
Zm00001eb027240 Zea mays HOM05D013050 ORTHO05D013988 1.3e-06 57.8 68 48.5
unitig_0.g1157 Utricularia gibba HOM05D005130 ORTHO05D006185 2.3e-06 57.0 198 32.8
Zm00001eb098820 Zea mays HOM05D013050 ORTHO05D013988 2.9e-06 56.6 34 79.4
Zm00001eb260300 Zea mays HOM05D013050 ORTHO05D013988 2.9e-06 56.6 68 50.0
MBI17_g30523_MAGBIO Magnolia biondii HOM05D004205 ORTHO05D004977 6.6e-06 55.5 198 29.8
Zm00001eb355320 Zea mays HOM05D013050 ORTHO05D013988 6.6e-06 55.5 68 50.0


User provided reference genes

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