Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g099770 Amaranthus hybridus HOM05D005811 ORTHO05D007070 6.1e-49 197.2 103 100.0
EL10Ac7g16131 Beta vulgaris HOM05D005811 ORTHO05D007070 4.1e-29 131.3 102 67.6
AUR62020102 Chenopodium quinoa HOM05D005811 ORTHO05D007070 5.4e-29 131.0 104 69.2
AUR62001678 Chenopodium quinoa HOM05D005811 ORTHO05D007070 7.1e-29 130.6 104 69.2
Manes.02G121312 Manihot esculenta HOM05D005811 ORTHO05D007070 9.9e-23 110.2 102 61.8
MELO3C025865.2 Cucumis melo HOM05D005811 ORTHO05D007070 1.3e-22 109.8 103 59.2
Sabra16G0151600 Salix brachista HOM05D005811 ORTHO05D007070 1.9e-21 105.9 103 59.2
Hund04884 Selenicereus undatus HOM05D004319 ORTHO05D007070 7.1e-21 104.0 95 64.2
Potri.001G249600 Populus trichocarpa HOM05D005811 ORTHO05D007070 9.2e-21 103.6 103 58.3
ClCG02G019670 Citrullus lanatus HOM05D005811 ORTHO05D007070 2.7e-20 102.1 104 56.7
CsaV3_6G016350 Cucumis sativus L. HOM05D005811 ORTHO05D007070 1.3e-19 99.8 104 55.8
Thecc.09G304900 Theobroma cacao HOM05D005811 ORTHO05D007070 1.3e-19 99.8 101 58.4
Sabra09G0031000 Salix brachista HOM05D005811 ORTHO05D007070 1.7e-19 99.4 103 61.2
Sc06g0008440 Simmondsia chinensis HOM05D005811 ORTHO05D007070 1.7e-19 99.4 101 59.4
Duzib150G1392 Durio zibethinus HOM05D005811 ORTHO05D007070 2.3e-19 99.0 100 57.0
Duzib168G1366 Durio zibethinus HOM05D005811 ORTHO05D007070 3.9e-19 98.2 101 54.5
CANSAT54G2446 Cannabis sativa HOM05D005811 ORTHO05D007070 1.5e-18 96.3 100 53.0
TPR.G13272 Trifolium pratense HOM05D005811 ORTHO05D007070 1.5e-18 96.3 103 57.3
Cfa011662 Carpinus fangiana HOM05D005811 ORTHO05D007070 2.5e-18 95.5 103 54.4
Lj6g0027141 Lotus japonicus HOM05D005811 ORTHO05D007070 4.3e-18 94.7 101 58.4
PGR102G1689 Punica granatum HOM05D005811 ORTHO05D007070 5.6e-18 94.4 103 55.3
Prupe.6G060300 Prunus persica HOM05D005811 ORTHO05D007070 7.3e-18 94.0 107 56.1
Gorai.009G093000 Gossypium raimondii HOM05D005811 ORTHO05D007070 2.8e-17 92.0 100 52.0
Ciclev10029657m.g Citrus clementina HOM05D005811 ORTHO05D007070 3.6e-17 91.7 102 52.9
CiPaw.13G080400 Carya illinoinensis HOM05D005811 ORTHO05D007070 4.8e-17 91.3 103 52.4
THA.LOC104799405 Tarenaya hassleriana HOM05D005811 ORTHO05D007070 6.2e-17 90.9 101 54.5
Cpa.g.sc112.49 Carica papaya HOM05D005811 ORTHO05D007070 1.1e-16 90.1 101 52.5
Gohir.A05G089600 Gossypium hirsutum HOM05D005811 ORTHO05D007070 1.1e-16 90.1 101 51.5
Gohir.D05G090500 Gossypium hirsutum HOM05D005811 ORTHO05D007070 1.4e-16 89.7 100 51.0
Haze_24267 Corylus avellana HOM05D005811 ORTHO05D007070 1.8e-16 89.4 103 54.4
Duzib170G0110 Durio zibethinus HOM05D005811 ORTHO05D007070 3.1e-16 88.6 101 53.5
TWI75G0861 Tripterygium wilfordii HOM05D005811 ORTHO05D007070 4.0e-16 88.2 100 53.0
A10p15470 Brassica napus HOM05D005811 ORTHO05D007070 9.0e-16 87.0 105 50.5
BolC9t57959H Brassica oleracea HOM05D005811 ORTHO05D007070 9.0e-16 87.0 105 50.5
BraA10t43688Z Brassica rapa HOM05D005811 ORTHO05D007070 9.0e-16 87.0 105 50.5
Glyma.18G065900 Glycine max HOM05D005811 ORTHO05D007070 9.0e-16 87.0 100 54.0
VMungo0540G1301 Vigna mungo HOM05D005811 ORTHO05D007070 9.0e-16 87.0 100 54.0
Phvul.006G065100 Phaseolus vulgaris HOM05D005811 ORTHO05D007070 1.2e-15 86.7 100 53.0
MD03G1073700 Malus domestica HOM05D005811 ORTHO05D007070 1.5e-15 86.3 107 52.3
Sp6g20560 Schrenkiella parvula HOM05D005811 ORTHO05D007070 2.0e-15 85.9 106 50.9
Manes.01G163700 Manihot esculenta HOM05D005811 ORTHO05D007070 2.6e-15 85.5 101 48.5
Gorai.003G124000 Gossypium raimondii HOM05D005811 ORTHO05D007070 3.4e-15 85.1 103 51.5
BcaC04g19852 Brassica carinata HOM05D005811 ORTHO05D007070 4.4e-15 84.7 105 49.5
BcaC04g19853 Brassica carinata HOM05D005811 ORTHO05D007070 4.4e-15 84.7 105 49.5
Gohir.A03G049700 Gossypium hirsutum HOM05D005811 ORTHO05D007070 4.4e-15 84.7 101 51.5
Gohir.D03G117600 Gossypium hirsutum HOM05D005811 ORTHO05D007070 4.4e-15 84.7 103 51.5
MBI06_g39483_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 4.4e-15 84.7 102 54.9
MBI06_g42850_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 4.4e-15 84.7 102 54.9
C09p51020 Brassica napus HOM05D005811 ORTHO05D007070 5.8e-15 84.3 105 49.5
CARHR272810 Cardamine hirsuta HOM05D005811 ORTHO05D007070 5.8e-15 84.3 106 52.8
Sed0022374 Sechium edule HOM05D005811 ORTHO05D007070 5.8e-15 84.3 103 51.5
Thhalv10015099m.g Eutrema salsugineum HOM05D005811 ORTHO05D007070 7.6e-15 84.0 98 53.1
MBI14_g04429_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 7.6e-15 84.0 100 53.0
RcHm_v2.0_Chr5g0068741 Rosa chinensis HOM05D005811 ORTHO05D007070 7.6e-15 84.0 105 50.5
LjContig00155g0018843 Lotus japonicus HOM05D005811 ORTHO05D007070 3.8e-14 81.6 100 53.0
MD11G1079700 Malus domestica HOM05D005811 ORTHO05D007070 3.8e-14 81.6 107 50.5
Nn2g13640 Nelumbo nucifera HOM05D005811 ORTHO05D007070 3.8e-14 81.6 101 50.5
TAR369G0215 Trochodendron aralioides HOM05D005811 ORTHO05D007070 3.8e-14 81.6 101 49.5
Nn2g11406 Nelumbo nucifera HOM05D005811 ORTHO05D007070 1.1e-13 80.1 101 50.5
HPP92_012634 Vanilla planifolia HOM05D005811 ORTHO05D007070 1.1e-13 80.1 104 51.0
Lalb_Chr04g0252281 Lupinus albus HOM05D005811 ORTHO05D007070 1.4e-13 79.7 101 51.5
A06p27110 Brassica napus HOM05D005811 ORTHO05D007070 1.9e-13 79.3 94 48.9
BraA06t25647Z Brassica rapa HOM05D005811 ORTHO05D007070 1.9e-13 79.3 94 48.9
CiPaw.14G060800 Carya illinoinensis HOM05D005811 ORTHO05D007070 2.4e-13 79.0 104 49.0
Sed0014350 Sechium edule HOM05D005811 ORTHO05D007070 2.4e-13 79.0 103 53.4
Ca_05589_v3 Cicer arietinum L. HOM05D005811 ORTHO05D007070 3.2e-13 78.6 100 50.0
BNapus_Darmor_BZH_scaffold_82p00020 Brassica napus HOM05D005811 ORTHO05D007070 4.2e-13 78.2 94 46.8
BcaC01g02249 Brassica carinata HOM05D005811 ORTHO05D007070 5.4e-13 77.8 94 46.8
BolC3t19011H Brassica oleracea HOM05D005811 ORTHO05D007070 5.4e-13 77.8 94 46.8
Nitab4.5_0000102g0070 Nicotiana tabacum HOM05D005811 ORTHO05D007070 5.4e-13 77.8 86 55.8
AL5G26310 Arabidopsis lyrata HOM05D005811 ORTHO05D007070 9.3e-13 77.0 94 53.2
Medtr5g069990 Medicago truncatula HOM05D005811 ORTHO05D007070 9.3e-13 77.0 110 45.5
Lalb_Chr04g0252321 Lupinus albus HOM05D005811 ORTHO05D007070 1.2e-12 76.6 102 52.0
Actinidia34450 Actinidia chinensis HOM05D000731 ORTHO05D003068 1.6e-12 76.3 101 50.5
AT3G47070 Arabidopsis thaliana HOM05D005811 ORTHO05D007070 2.1e-12 75.9 92 47.8
Solyc06g076790.1 Solanum lycopersicum HOM05D005811 ORTHO05D007070 2.1e-12 75.9 92 51.1
Aa31LG4G15980 Aethionema arabicum HOM05D005811 ORTHO05D007070 2.7e-12 75.5 96 45.8
CAN.G394.109 Capsicum annuum HOM05D005811 ORTHO05D007070 3.5e-12 75.1 87 51.7
MSTRG.18574 Avicennia marina HOM05D005811 ORTHO05D007070 6.0e-12 74.3 106 50.9
BcaB02g10703 Brassica carinata HOM05D005811 ORTHO05D007070 6.0e-12 74.3 95 46.3
Psat2g059240 Pisum sativum HOM05D005811 ORTHO05D007070 6.0e-12 74.3 100 47.0
Carub.0005s1331 Capsella rubella HOM05D005811 ORTHO05D007070 1.0e-11 73.6 97 43.3
Nitab4.5_0000010g0190 Nicotiana tabacum HOM05D005811 ORTHO05D007070 1.3e-11 73.2 85 51.8
ATR0618G101 Amborella trichopoda HOM05D005811 ORTHO05D007070 2.3e-11 72.4 101 49.5
BcaC01g01857 Brassica carinata HOM05D005811 ORTHO05D007070 2.3e-11 72.4 97 49.5
BcaC01g01858 Brassica carinata HOM05D005811 ORTHO05D007070 2.3e-11 72.4 97 49.5
DCAR_018965 Daucus carota HOM05D005811 ORTHO05D007070 2.3e-11 72.4 86 50.0
C03p71300 Brassica napus HOM05D005811 ORTHO05D007070 3.0e-11 72.0 97 48.5
BolC3t19415H Brassica oleracea HOM05D005811 ORTHO05D007070 3.0e-11 72.0 97 48.5
Dinv28620 Davidia involucrata HOM05D005811 ORTHO05D007070 5.1e-11 71.2 93 46.2
PGSC0003DMG400004165 Solanum tuberosum HOM05D005811 ORTHO05D007070 5.1e-11 71.2 83 49.4
Nitab4.5_0004144g0020 Nicotiana tabacum HOM05D005811 ORTHO05D007070 6.6e-11 70.9 85 51.8
A06p20460 Brassica napus HOM05D005811 ORTHO05D007070 8.7e-11 70.5 97 47.4
BraA06t25121Z Brassica rapa HOM05D005811 ORTHO05D007070 8.7e-11 70.5 97 47.4
QL01p037422 Quercus lobata HOM05D005811 ORTHO05D007070 8.7e-11 70.5 100 46.0
Sp5g14660 Schrenkiella parvula HOM05D005811 ORTHO05D007070 8.7e-11 70.5 118 40.7
BcaB01g00949 Brassica carinata HOM05D005811 ORTHO05D007070 1.1e-10 70.1 98 49.0
Potri.009G043600 Populus trichocarpa HOM05D005811 ORTHO05D007070 1.1e-10 70.1 103 49.5
TPR.G24035 Trifolium pratense HOM05D005811 ORTHO05D007070 1.1e-10 70.1 103 45.6
Glyma.11G176000 Glycine max HOM05D005811 ORTHO05D007070 1.9e-10 69.3 100 48.0
Medtr3g462990 Medicago truncatula HOM05D005811 ORTHO05D007070 3.3e-10 68.6 51 64.7
Peaxi162Scf01058g00001 Petunia axillaris HOM05D005811 ORTHO05D007070 3.3e-10 68.6 73 56.2
Aqoxy2G00950 Aquilegia oxysepala HOM05D005811 ORTHO05D007070 4.3e-10 68.2 59 62.7
FvH4_3g38260 Fragaria vesca HOM05D005811 ORTHO05D007070 5.6e-10 67.8 67 52.2
FAN11G0366 Fragaria x ananassa HOM05D005811 ORTHO05D007070 5.6e-10 67.8 67 52.2
PGSC0003DMG400030440 Solanum tuberosum HOM05D005811 ORTHO05D007070 7.3e-10 67.4 74 52.7
arahy.Tifrunner.gnm1.ann1.8DRC0W Arachis hypogaea HOM05D005811 ORTHO05D007070 9.6e-10 67.0 101 47.5
arahy.Tifrunner.gnm1.ann1.AMG8UC Arachis hypogaea HOM05D005811 ORTHO05D007070 9.6e-10 67.0 101 47.5
Migut.D02091 Erythranthe guttata HOM05D005811 ORTHO05D007070 9.6e-10 67.0 87 49.4
FAN16G2097 Fragaria x ananassa HOM05D005811 ORTHO05D007070 1.6e-09 66.2 67 50.7
Lsat_1_v5_gn_8_71220 Lactuca sativa HOM05D005811 ORTHO05D007070 2.1e-09 65.9 83 47.0
Thhalv10010831m.g Eutrema salsugineum HOM05D005811 ORTHO05D007070 3.6e-09 65.1 109 41.3
FAN21G0983 Fragaria x ananassa HOM05D005811 ORTHO05D007070 6.2e-09 64.3 105 41.9
FAN25G1329 Fragaria x ananassa HOM05D005811 ORTHO05D007070 1.4e-08 63.2 67 49.3
vmacro02985 Vaccinium macrocarpon HOM05D005811 ORTHO05D007070 4.0e-08 61.6 103 43.7
Dinv14462 Davidia involucrata HOM05D005811 ORTHO05D007070 5.3e-08 61.2 62 50.0
Hma1.2p1_1010F.1_g247360 Hydrangea macrophylla HOM05D005811 ORTHO05D007070 5.3e-08 61.2 104 44.2
Carub.0008s1950 Capsella rubella HOM05D005811 ORTHO05D007070 1.5e-07 59.7 59 54.2
CAN.G780.4 Capsicum annuum HOM05D005811 ORTHO05D007070 1.5e-07 59.7 74 50.0
Lalb_Chr10g0103291 Lupinus albus HOM05D005811 ORTHO05D007070 2.6e-07 58.9 101 39.6
Nn4g22044 Nelumbo nucifera HOM05D005811 ORTHO05D007070 3.4e-07 58.5 91 41.8
Rhsim13G0071700 Rhododendron simsii HOM05D005811 ORTHO05D007070 3.4e-07 58.5 103 43.7
MBI05_g30574_MAGBIO Magnolia biondii HOM05D000339 ORTHO05D000212 4.5e-07 58.2 99 43.4
Nn1g05379 Nelumbo nucifera HOM05D005811 ORTHO05D007070 5.8e-07 57.8 61 52.5
SGA_v2.0_scaffold443G51693 Striga asiatica HOM05D005811 ORTHO05D007070 5.8e-07 57.8 41 63.4
PSO339G4375 Papaver somniferum HOM05D005811 ORTHO05D007070 3.8e-06 55.1 86 45.3
Sopen06g033180 Solanum pennellii HOM05D005811 ORTHO05D007070 3.8e-06 55.1 50 54.0
Nn3g20363 Nelumbo nucifera HOM05D005811 ORTHO05D007070 4.9e-06 54.7 66 50.0
unitig_746.g26735 Utricularia gibba HOM05D005811 ORTHO05D007070 4.9e-06 54.7 71 49.3
Os07g0243150 Oryza sativa ssp. japonica HOM05D019609 ORTHO05D007070 8.4e-06 53.9 98 41.8


User provided reference genes

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